Experiment set5IT086 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

200 most detrimental genes:

  gene name fitness t score description  
CSW01_18560 +1.5 1.9 hypothetical protein compare
CSW01_10630 +1.5 6.0 flagella biosynthesis chaperone FliJ compare
CSW01_08070 +1.3 1.8 hypothetical protein compare
CSW01_07580 +1.2 2.4 hypothetical protein compare
CSW01_03070 +1.1 3.3 hemolysin compare
CSW01_10670 +1.1 7.5 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_10655 +1.1 3.4 flagellar hook-basal body complex protein FliE compare
CSW01_10595 +1.1 6.1 flagellar biosynthetic protein FliP compare
CSW01_10300 +1.1 5.9 chemotaxis protein CheW compare
CSW01_09440 +1.0 5.1 PilZ domain-containing protein compare
CSW01_10660 +1.0 8.8 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_10345 +1.0 7.1 flagellar biosynthesis protein FlhF compare
CSW01_11250 +1.0 5.6 molecular chaperone compare
CSW01_10035 +1.0 1.7 YnhF family membrane protein compare
CSW01_09990 +1.0 2.5 hypothetical protein compare
CSW01_10350 +1.0 8.6 flagellar biosynthesis protein FlhA compare
CSW01_11195 +1.0 5.7 flagellar L-ring protein compare
CSW01_10650 +1.0 8.3 flagellar basal body M-ring protein FliF compare
CSW01_10605 +0.9 2.2 flagellar motor switch protein FliN compare
CSW01_13165 +0.9 6.9 sel1 repeat family protein compare
CSW01_10665 +0.9 8.0 PAS domain-containing sensor histidine kinase compare
CSW01_11210 +0.9 6.5 flagellar hook protein FlgE compare
CSW01_04580 +0.9 5.6 flagellar motor protein MotB compare
CSW01_10675 +0.9 3.8 flagellar protein FliS compare
CSW01_10640 +0.9 6.5 flagellar assembly protein FliH compare
CSW01_05130 +0.9 6.9 flagellar protein MotY compare
CSW01_11190 +0.9 6.0 flagellar P-ring protein compare
CSW01_10580 +0.9 6.5 flagellar biosynthesis protein FlhB compare
CSW01_17750 +0.9 1.2 cytochrome B compare
CSW01_10635 +0.9 6.9 flagellum-specific ATP synthase FliI compare
CSW01_10335 +0.9 5.0 RNA polymerase sigma factor FliA compare
CSW01_04575 +0.9 5.4 flagellar motor protein PomA compare
CSW01_17830 +0.9 1.3 hypothetical protein compare
CSW01_16690 +0.8 1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_10645 +0.8 6.7 flagellar motor switch protein FliG compare
CSW01_11265 +0.8 5.5 flagellar basal-body protein compare
CSW01_02110 +0.8 6.5 MSHA biogenesis protein MshJ compare
CSW01_10680 +0.8 3.9 flagellar protein FliT compare
CSW01_10600 +0.8 3.0 flagellar biosynthetic protein FliO compare
CSW01_05225 +0.8 2.2 molybdopterin synthase sulfur carrier subunit compare
CSW01_08685 +0.8 3.6 glycogen synthase compare
CSW01_11200 +0.8 6.6 flagellar basal-body rod protein FlgG compare
CSW01_17675 +0.8 6.2 GGDEF domain-containing protein compare
CSW01_04940 +0.8 1.3 hypothetical protein compare
CSW01_11225 +0.8 5.3 flagellar basal body rod protein FlgB compare
CSW01_02115 +0.8 5.9 MSHA biogenesis protein MshK compare
CSW01_11205 +0.8 5.2 flagellar basal-body rod protein FlgF compare
CSW01_18685 +0.8 1.1 heme utilization cystosolic carrier protein HutX compare
CSW01_02160 +0.8 4.9 MSHA pilin protein MshC compare
CSW01_02140 +0.8 6.4 type II secretion system F family protein compare
CSW01_10620 +0.7 5.9 flagellar hook-length control protein FliK compare
CSW01_10590 +0.7 2.9 flagellar biosynthetic protein FliQ compare
CSW01_16130 +0.7 1.1 acetyltransferase compare
CSW01_10295 +0.7 2.3 DUF2802 domain-containing protein compare
CSW01_06035 +0.7 1.2 hypothetical protein compare
CSW01_10700 +0.7 4.6 flagellin D compare
CSW01_12245 +0.7 4.0 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
CSW01_10585 +0.7 4.5 flagellar type III secretion system protein FliR compare
CSW01_10685 +0.7 6.0 flagellar hook-associated protein 2 compare
CSW01_07750 +0.7 1.0 hypothetical protein compare
CSW01_02170 +0.7 5.9 type II secretion system protein compare
CSW01_00515 +0.7 2.5 hypothetical protein compare
CSW01_02130 +0.7 5.9 MSHA biogenesis protein MshN compare
CSW01_07005 +0.7 2.1 hypothetical protein compare
CSW01_02105 +0.7 5.7 MSHA biogenesis protein MshI compare
CSW01_02180 +0.7 6.5 MSHA biogenesis protein MshQ compare
CSW01_11180 +0.7 5.2 flagellar hook-associated protein FlgK compare
CSW01_11170 +0.7 4.9 flagellin A compare
CSW01_14920 +0.7 1.3 NADH:ubiquinone oxidoreductase compare
CSW01_08985 +0.7 1.5 6-phospho-beta-glucosidase compare
CSW01_13950 +0.6 1.7 hypothetical protein compare
CSW01_02165 +0.6 4.8 MSHA pilin protein MshD compare
CSW01_02120 +0.6 5.6 pilus (MSHA type) biogenesis protein MshL compare
CSW01_11175 +0.6 4.4 flagellar hook-associated protein 3 compare
CSW01_05660 +0.6 2.0 dethiobiotin synthase compare
CSW01_10610 +0.6 4.0 flagellar motor switch protein FliM compare
CSW01_07135 +0.6 2.7 chromosome partitioning protein ParA compare
CSW01_07475 +0.6 1.4 glutaredoxin family protein compare
CSW01_02155 +0.6 3.7 MSHA pilin protein MshA compare
CSW01_05815 +0.6 1.0 glutaredoxin compare
CSW01_17395 +0.6 2.2 hypothetical protein compare
CSW01_10235 +0.6 1.6 hypothetical protein compare
CSW01_00870 +0.6 3.2 cytochrome c5 family protein compare
CSW01_12780 +0.6 1.7 hypothetical protein compare
CSW01_09000 +0.6 2.1 transcriptional regulator compare
CSW01_01915 +0.6 1.9 bacterioferritin-associated ferredoxin compare
CSW01_02175 +0.6 4.4 MSHA biogenesis protein MshP compare
CSW01_14280 +0.6 2.3 DUF3302 domain-containing protein compare
CSW01_01125 +0.6 4.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_11215 +0.6 2.4 flagellar hook assembly protein FlgD compare
CSW01_00675 +0.6 1.5 hypothetical protein compare
CSW01_02135 +0.6 5.0 MSHA biogenesis protein MshE compare
CSW01_02125 +0.6 3.9 MSHA biogenesis protein MshM compare
CSW01_12515 +0.6 1.7 DUF1107 domain-containing protein compare
CSW01_13450 +0.6 1.6 EF-P beta-lysylation protein EpmB compare
CSW01_18010 +0.6 1.4 cytochrome C554 compare
CSW01_02220 +0.5 4.6 metalloprotease TldD compare
CSW01_12845 +0.5 3.9 metalloprotease PmbA compare
CSW01_02460 +0.5 4.4 type IV pili twitching motility protein PilT compare
CSW01_16025 +0.5 1.6 hypothetical protein compare
CSW01_02150 +0.5 2.6 MSHA biogenesis protein MshB compare
CSW01_15860 +0.5 1.7 DUF645 domain-containing protein compare
CSW01_06380 +0.5 0.3 GTP cyclohydrolase II compare
CSW01_04935 +0.5 0.8 phosphocarrier protein HPr compare
CSW01_11185 +0.5 3.5 flagellar assembly peptidoglycan hydrolase FlgJ compare
CSW01_09275 +0.5 1.8 hypothetical protein compare
CSW01_11220 +0.5 1.9 flagellar basal body rod protein FlgC compare
CSW01_01870 +0.5 3.0 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
CSW01_15695 +0.5 1.5 DUF3265 domain-containing protein compare
CSW01_01425 +0.5 0.8 phosphoribosylamine--glycine ligase compare
CSW01_16185 +0.5 2.1 DUF3265 domain-containing protein compare
CSW01_01325 +0.5 2.0 acetyltransferase compare
CSW01_05015 +0.5 1.4 selenoprotein W-like protein compare
CSW01_09740 +0.5 1.7 hypothetical protein compare
CSW01_06535 +0.5 1.7 hypothetical protein compare
CSW01_15965 +0.5 1.5 DUF645 domain-containing protein compare
CSW01_13295 +0.5 4.2 cell division protein DamX compare
CSW01_18120 +0.5 2.3 DUF2238 domain-containing protein compare
CSW01_10440 +0.5 1.7 succinate dehydrogenase flavoprotein subunit compare
CSW01_01975 +0.5 3.7 chemotaxis protein CheX compare
CSW01_06335 +0.5 1.2 (2Fe-2S)-binding protein compare
CSW01_05010 +0.5 2.5 phosphodiesterase compare
CSW01_03815 +0.5 1.8 peroxidase compare
CSW01_13415 +0.5 1.2 rhodanese-like domain-containing protein compare
CSW01_12710 +0.5 1.9 hypothetical protein compare
CSW01_12415 +0.5 3.7 two-component sensor histidine kinase BarA compare
CSW01_18835 +0.5 1.0 acyl-CoA thioesterase compare
CSW01_15255 +0.5 1.6 copper-binding protein compare
CSW01_04540 +0.5 2.1 DUF3301 domain-containing protein compare
CSW01_10745 +0.4 0.9 DUF2897 domain-containing protein compare
CSW01_10135 +0.4 1.5 hypothetical protein compare
CSW01_16900 +0.4 0.9 twin-arginine translocase TatA/TatE family subunit compare
CSW01_06195 +0.4 1.3 hypothetical protein compare
CSW01_15585 +0.4 1.6 DUF645 domain-containing protein compare
CSW01_10615 +0.4 2.0 flagellar basal body-associated protein FliL compare
CSW01_08105 +0.4 2.7 type IV pilus biogenesis/stability protein PilW compare
CSW01_16585 +0.4 1.2 acetyltransferase compare
CSW01_18555 +0.4 1.6 hypothetical protein compare
CSW01_10500 +0.4 2.2 CidA/LrgA family protein compare
CSW01_05165 +0.4 1.0 electron transport complex subunit RsxC compare
CSW01_01250 +0.4 3.7 polymerase compare
CSW01_00110 +0.4 2.0 hypothetical protein compare
CSW01_18865 +0.4 2.4 spermidine acetyltransferase compare
CSW01_16665 +0.4 1.2 nucleotide pyrophosphohydrolase compare
CSW01_00520 +0.4 2.2 flagellar basal body-associated protein FliL compare
CSW01_16470 +0.4 1.6 DUF645 domain-containing protein compare
CSW01_17425 +0.4 1.3 DUF2892 domain-containing protein compare
CSW01_04870 +0.4 0.9 ribosome silencing factor compare
CSW01_05610 +0.4 2.6 sensor domain-containing diguanylate cyclase compare
CSW01_07175 +0.4 2.4 DUF2987 domain-containing protein compare
CSW01_16960 +0.4 1.9 DUF475 domain-containing protein compare
CSW01_08465 +0.4 0.8 ABC transporter ATP-binding protein compare
CSW01_10170 +0.4 1.0 MarC family protein compare
CSW01_06020 +0.4 1.8 transporter compare
CSW01_09420 +0.4 1.0 DUF2062 domain-containing protein compare
CSW01_02260 +0.4 1.2 C4-dicarboxylate ABC transporter substrate-binding protein compare
CSW01_15065 +0.4 1.9 GGDEF domain-containing protein compare
CSW01_06325 +0.4 0.9 hypothetical protein compare
CSW01_17320 +0.4 1.0 hypothetical protein compare
CSW01_10280 +0.4 1.6 heme exporter protein C compare
CSW01_14210 +0.4 2.0 hypothetical protein compare
CSW01_10315 +0.4 2.4 chemotaxis response regulator protein-glutamate methylesterase compare
CSW01_15210 +0.4 2.2 L-ascorbate 6-phosphate lactonase compare
CSW01_06835 +0.4 1.6 BAX inhibitor protein compare
CSW01_03660 +0.4 1.5 trp operon repressor compare
CSW01_16850 +0.4 2.7 hybrid sensor histidine kinase/response regulator compare
CSW01_06805 +0.4 1.2 peroxiredoxin compare
CSW01_17050 +0.4 2.0 histidine kinase compare
CSW01_09600 +0.4 1.4 DNA-binding protein HU-beta compare
CSW01_03845 +0.4 0.7 hypothetical protein compare
CSW01_15340 +0.4 2.7 serine hydroxymethyltransferase compare
CSW01_17585 +0.4 0.8 periplasmic nitrate reductase electron transfer subunit compare
CSW01_05070 +0.4 2.4 N-acetylglucosamine-6-phosphate deacetylase compare
CSW01_16920 +0.4 1.0 hypothetical protein compare
CSW01_09220 +0.4 0.6 cyd operon protein YbgE compare
CSW01_14085 +0.4 0.7 transcriptional regulator compare
CSW01_03100 +0.4 2.2 TetR/AcrR family transcriptional regulator compare
CSW01_09885 +0.4 1.8 DTW domain-containing protein compare
CSW01_18670 +0.4 2.8 CdaR family transcriptional regulator compare
CSW01_12730 +0.4 2.4 aspartate carbamoyltransferase regulatory subunit compare
CSW01_01320 +0.4 2.9 acyl-CoA reductase compare
CSW01_07240 +0.4 2.5 histidine kinase compare
CSW01_15845 +0.4 1.2 DUF3265 domain-containing protein compare
CSW01_12575 +0.4 2.3 transcriptional regulator LeuO compare
CSW01_18230 +0.4 1.5 agmatinase compare
CSW01_01980 +0.4 2.3 transcriptional regulator Zur compare
CSW01_08185 +0.4 2.3 hydroxyneurosporene synthase compare
CSW01_19125 +0.4 1.0 branched-chain amino acid ABC transporter compare
CSW01_07900 +0.4 1.5 hypothetical protein compare
CSW01_11420 +0.3 1.0 cytochrome C biogenesis protein CcsB compare
CSW01_07320 +0.3 1.7 hypothetical protein compare
CSW01_07650 +0.3 2.6 ABC transporter permease compare
CSW01_02230 +0.3 1.4 ribonuclease E inhibitor RraB compare
CSW01_01170 +0.3 2.4 hypothetical protein compare
CSW01_11800 +0.3 1.4 hydroxyacid dehydrogenase compare
CSW01_07185 +0.3 1.7 universal stress protein UspE compare
CSW01_05845 +0.3 2.4 HDOD domain-containing protein compare
CSW01_14710 +0.3 2.2 Spindolin compare
CSW01_05295 +0.3 1.2 low molecular weight phosphotyrosine protein phosphatase compare
CSW01_03740 +0.3 1.1 oxygen-insensitive NADPH nitroreductase compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_anaerobic experiments

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids across organisms