Experiment set5IT085 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium nitrate 0.125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2313 -4.6 -3.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3617 -4.3 -5.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5069 -4.0 -6.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2080 -3.5 -2.4 hypothetical protein compare
Pf6N2E2_5006 -3.4 -8.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5068 -3.4 -13.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_4584 -3.4 -3.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5178 -3.3 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3839 -2.9 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3782 -2.8 -4.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2825 -2.8 -3.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4454 -2.6 -5.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5160 -2.6 -2.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5242 -2.6 -2.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_178 -2.6 -1.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2675 -2.5 -1.7 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4159 -2.4 -3.8 Cytochrome c4 compare
Pf6N2E2_3841 -2.3 -5.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5425 -2.3 -1.5 hypothetical protein compare
Pf6N2E2_5342 -2.3 -3.4 21 kDa hemolysin precursor compare
Pf6N2E2_2320 -2.3 -3.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5338 -2.3 -7.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4585 -2.2 -10.0 Cell division protein FtsX compare
Pf6N2E2_3303 -2.1 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3842 -2.1 -3.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3251 -2.1 -6.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2281 -2.0 -2.1 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3770 -2.0 -2.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3253 -2.0 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4204 -2.0 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3325 -2.0 -3.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_4146 -1.9 -1.9 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_5252 -1.9 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_4369 -1.9 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5508 -1.9 -2.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5103 -1.9 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_1056 -1.8 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2488 -1.8 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2824 -1.8 -8.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3351 -1.8 -3.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5337 -1.8 -3.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5001 -1.8 -1.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3908 -1.8 -5.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5527 -1.8 -2.3 Cold shock protein CspC compare
Pf6N2E2_2126 -1.8 -5.5 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_5207 -1.8 -1.4 hypothetical protein compare
Pf6N2E2_1636 -1.7 -6.3 Ferrichrome-iron receptor compare
Pf6N2E2_3338 -1.7 -2.3 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_2880 -1.7 -3.1 FIG00959696: hypothetical protein compare
Pf6N2E2_3610 -1.7 -4.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_156 -1.7 -1.6 Carbon storage regulator compare
Pf6N2E2_3460 -1.7 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5339 -1.6 -5.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2274 -1.6 -4.7 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2440 -1.6 -1.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_2508 -1.6 -3.0 hypothetical protein compare
Pf6N2E2_5316 -1.6 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2318 -1.6 -5.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3786 -1.6 -2.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_2823 -1.6 -4.1 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5156 -1.5 -2.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2261 -1.5 -5.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_4826 -1.5 -6.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_5766 -1.5 -1.7 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_955 -1.5 -3.5 FIG00953508: hypothetical protein compare
Pf6N2E2_3252 -1.5 -4.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4451 -1.5 -4.5 FIG139438: lipoprotein B compare
Pf6N2E2_3783 -1.5 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4044 -1.5 -3.3 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_3260 -1.5 -3.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2310 -1.5 -7.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_75 -1.5 -2.4 Colicin V production protein compare
Pf6N2E2_4579 -1.4 -2.1 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2311 -1.4 -5.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_338 -1.4 -1.9 Transcriptional regulator, AraC family compare
Pf6N2E2_3665 -1.4 -0.9 serine/threonine protein kinase compare
Pf6N2E2_2127 -1.4 -3.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3834 -1.4 -4.6 Lipoprotein NlpD compare
Pf6N2E2_204 -1.4 -1.5 hypothetical protein compare
Pf6N2E2_464 -1.4 -2.0 Sensory histidine kinase QseC compare
Pf6N2E2_4077 -1.4 -1.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2752 -1.4 -5.8 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2218 -1.4 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4048 -1.3 -3.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3257 -1.3 -2.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5761 -1.3 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_1617 -1.3 -1.2 COG2199: FOG: GGDEF domain compare
Pf6N2E2_4984 -1.3 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4153 -1.3 -1.0 Sensory box histidine kinase compare
Pf6N2E2_1087 -1.3 -5.9 Iron siderophore sensor protein compare
Pf6N2E2_945 -1.3 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2253 -1.3 -2.4 hypothetical protein compare
Pf6N2E2_2574 -1.3 -1.6 Flagellar synthesis regulator FleN compare
Pf6N2E2_5520 -1.3 -4.4 Sensory box histidine kinase compare
Pf6N2E2_2074 -1.2 -1.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5703 -1.2 -3.1 outer membrane protein H1 compare
Pf6N2E2_3521 -1.2 -5.4 Sensor histidine kinase/response regulator compare
Pf6N2E2_3179 -1.2 -1.7 FIG021952: putative membrane protein compare
Pf6N2E2_4825 -1.2 -4.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_1499 -1.2 -2.2 ABC transporter amino acid-binding protein compare
Pf6N2E2_2317 -1.2 -3.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1876 -1.2 -1.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_2420 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_1040 -1.2 -1.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2510 -1.2 -3.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2791 -1.2 -1.8 FIG00954883: hypothetical protein compare
Pf6N2E2_1545 -1.2 -3.2 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4889 -1.1 -3.2 Putative transport protein compare
Pf6N2E2_4352 -1.1 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3847 -1.1 -2.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5319 -1.1 -5.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_1984 -1.1 -3.1 probable exported protein STY4558 compare
Pf6N2E2_3661 -1.1 -3.1 hypothetical protein compare
Pf6N2E2_4993 -1.1 -2.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2755 -1.1 -1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1323 -1.1 -2.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4071 -1.1 -1.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3039 -1.1 -2.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3461 -1.1 -1.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4047 -1.1 -3.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_902 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_2527 -1.1 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2277 -1.1 -1.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_1606 -1.1 -3.9 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_4187 -1.1 -2.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3243 -1.0 -6.6 FIG067310: hypothetical protein compare
Pf6N2E2_4263 -1.0 -2.6 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_3480 -1.0 -1.3 Transcriptional regulator, ArsR family compare
Pf6N2E2_5536 -1.0 -1.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2201 -1.0 -2.8 Transmembrane regulator protein PrtR compare
Pf6N2E2_4534 -1.0 -2.8 hypothetical protein compare
Pf6N2E2_1611 -1.0 -2.5 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_5705 -1.0 -1.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5321 -1.0 -4.6 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2693 -1.0 -1.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_623 -1.0 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_3940 -1.0 -4.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_719 -1.0 -2.2 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_3285 -1.0 -2.7 Rod shape-determining protein MreD compare
Pf6N2E2_3829 -1.0 -3.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_5155 -1.0 -1.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5049 -1.0 -1.9 acetyltransferase, GNAT family compare
Pf6N2E2_828 -1.0 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_5936 -1.0 -1.3 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_4046 -1.0 -7.1 FIG00953482: hypothetical protein compare
Pf6N2E2_5150 -1.0 -3.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_923 -1.0 -1.9 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_5452 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_2371 -0.9 -1.7 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_1009 -0.9 -1.7 Inositol transport system permease protein compare
Pf6N2E2_4273 -0.9 -4.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_869 -0.9 -2.4 FMN oxidoreductase compare
Pf6N2E2_4691 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_4276 -0.9 -2.9 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5739 -0.9 -0.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3505 -0.9 -1.0 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5190 -0.9 -5.2 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_3454 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_247 -0.9 -2.8 Transcriptional regulator, AraC family compare
Pf6N2E2_4092 -0.9 -2.1 FIG00954395: hypothetical protein compare
Pf6N2E2_2387 -0.9 -2.3 Ribonuclease E inhibitor RraA compare
Pf6N2E2_693 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_339 -0.9 -2.1 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_2480 -0.9 -1.0 FIG00957636: hypothetical protein compare
Pf6N2E2_1099 -0.9 -1.3 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_2354 -0.9 -3.0 MxiH protein; Type III secretion cytoplasmic protein (YscF) compare
Pf6N2E2_2582 -0.9 -1.9 Flagellar motor switch protein FliN compare
Pf6N2E2_3612 -0.9 -1.1 HflK protein compare
Pf6N2E2_1303 -0.8 -1.9 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_2546 -0.8 -1.4 Carbon storage regulator compare
Pf6N2E2_2513 -0.8 -2.6 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2045 -0.8 -1.9 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_3009 -0.8 -1.3 Phage tail tube protein compare
Pf6N2E2_1604 -0.8 -2.9 Acetyltransferase compare
Pf6N2E2_2507 -0.8 -3.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_161 -0.8 -1.6 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_2822 -0.8 -3.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_5241 -0.8 -1.6 Aminopeptidase N compare
Pf6N2E2_5014 -0.8 -0.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4458 -0.8 -3.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_1652 -0.8 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_1034 -0.8 -1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4743 -0.8 -0.6 hypothetical protein compare
Pf6N2E2_4678 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_3885 -0.8 -1.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_833 -0.8 -2.6 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_6081 -0.8 -1.3 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_5318 -0.8 -5.9 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_4205 -0.8 -2.1 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2266 -0.8 -1.4 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_2340 -0.8 -1.7 Transcriptional regulator, GntR family compare
Pf6N2E2_578 -0.8 -2.2 Mobile element protein compare
Pf6N2E2_3240 -0.8 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2930 -0.8 -1.4 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf6N2E2_1776 -0.8 -1.5 Chemotaxis protein CheD compare
Pf6N2E2_3876 -0.8 -2.2 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5555 -0.8 -0.8 Cold shock protein CspA compare
Pf6N2E2_5840 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_809 -0.8 -2.9 Various polyols ABC transporter, permease component 1 compare
Pf6N2E2_3982 -0.8 -1.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium nitrate across organisms