Experiment set5IT085 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Anaerobic_180MIN_ZN16B

200 most important genes:

  gene name fitness t score description  
CSW01_01300 -2.3 -4.8 sugar ABC transporter compare
CSW01_01295 -2.2 -2.1 ABC transporter permease compare
CSW01_09240 -2.0 -5.1 Holliday junction branch migration DNA helicase RuvB compare
CSW01_05265 -1.8 -2.3 methionine--tRNA ligase compare
CSW01_13305 -1.8 -2.3 shikimate kinase compare
CSW01_19435 -1.7 -3.7 hypothetical protein compare
CSW01_11535 -1.5 -6.1 thiamine-phosphate kinase compare
CSW01_14910 -1.5 -2.7 cold-shock protein compare
CSW01_02890 -1.5 -8.9 aspartate kinase compare
CSW01_13285 -1.4 -2.7 ribulose-phosphate 3-epimerase compare
CSW01_05575 -1.4 -3.3 phosphate acetyltransferase compare
CSW01_00095 -1.3 -3.3 hypothetical protein compare
CSW01_13805 -1.3 -3.5 Hsp33 family molecular chaperone HslO compare
CSW01_04375 -1.3 -4.2 SsrA-binding protein compare
CSW01_09245 -1.2 -3.4 Holliday junction branch migration protein RuvA compare
CSW01_14680 -1.2 -1.9 aminotransferase compare
CSW01_01265 -1.2 -2.8 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_09365 -1.2 -6.1 pyruvate formate lyase 1-activating protein compare
CSW01_10190 -1.1 -4.1 nucleoid-associated protein compare
CSW01_05370 -1.1 -2.5 YbaB/EbfC family nucleoid-associated protein compare
CSW01_11115 -1.1 -3.0 hypothetical protein compare
CSW01_03915 -1.1 -2.3 Fe-S assembly protein IscX compare
CSW01_04820 -1.0 -6.6 serine hydroxymethyltransferase compare
CSW01_00560 -1.0 -2.8 DNA polymerase I compare
CSW01_18350 -1.0 -1.0 cell division protein DedD compare
CSW01_13300 -1.0 -5.0 3-dehydroquinate synthase compare
CSW01_09350 -1.0 -6.9 formate C-acetyltransferase compare
CSW01_00650 -1.0 -4.8 tyrosine recombinase XerC compare
CSW01_12250 -1.0 -4.0 site-specific tyrosine recombinase XerD compare
CSW01_03790 -1.0 -2.8 phosphate ABC transporter, permease protein PstA compare
CSW01_07190 -0.9 -3.5 transcriptional regulator FNR compare
CSW01_01800 -0.9 -1.2 tRNA-Met compare
CSW01_08625 -0.9 -3.8 chromosome partition protein MukE compare
CSW01_01515 -0.9 -1.8 type II 3-dehydroquinate dehydratase compare
CSW01_08345 -0.9 -2.0 hypothetical protein compare
CSW01_01015 -0.8 -6.4 DNA helicase II compare
CSW01_02450 -0.8 -5.4 pyrroline-5-carboxylate reductase compare
CSW01_15000 -0.8 -2.0 rfbP protein compare
CSW01_05195 -0.8 -2.8 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_03330 -0.8 -2.9 transcription elongation factor GreA compare
CSW01_00465 -0.8 -2.3 twin-arginine translocase subunit TatB compare
CSW01_09525 -0.8 -0.8 DNA translocase FtsK compare
CSW01_08630 -0.8 -3.5 condensin subunit F compare
CSW01_05580 -0.8 -3.5 acetate kinase compare
CSW01_12365 -0.8 -1.9 inorganic phosphate transporter compare
CSW01_03475 -0.8 -2.8 ATP-dependent RNA helicase SrmB compare
CSW01_09620 -0.8 -1.6 trigger factor compare
CSW01_10390 -0.8 -2.7 ferrous iron transport protein A compare
CSW01_03155 -0.8 -3.9 RNA polymerase-binding transcription factor DksA compare
CSW01_07060 -0.8 -1.4 TetR/AcrR family transcriptional regulator compare
CSW01_08935 -0.7 -1.7 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_10485 -0.7 -1.2 DUF2788 domain-containing protein compare
CSW01_14125 -0.7 -3.1 1,4-alpha-glucan branching enzyme compare
CSW01_03985 -0.7 -2.4 GMP synthase (glutamine-hydrolyzing) compare
CSW01_10875 -0.7 -2.4 redox-regulated ATPase YchF compare
CSW01_17780 -0.7 -1.6 hypothetical protein compare
CSW01_02875 -0.7 -3.4 DNA recombination/repair protein RecA compare
CSW01_11690 -0.7 -4.4 hypothetical protein compare
CSW01_17855 -0.7 -5.2 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_04850 -0.7 -3.6 septal ring lytic transglycosylase RlpA compare
CSW01_04935 -0.7 -0.8 phosphocarrier protein HPr compare
CSW01_04390 -0.7 -1.4 outer membrane protein assembly factor BamE compare
CSW01_10385 -0.7 -4.3 Fe(2+) transporter permease subunit FeoB compare
CSW01_17585 -0.7 -1.1 periplasmic nitrate reductase electron transfer subunit compare
CSW01_05280 -0.7 -3.0 uridine kinase compare
CSW01_17370 -0.7 -1.8 hypothetical protein compare
CSW01_10565 -0.7 -1.5 hypothetical protein compare
CSW01_03075 -0.6 -2.1 phosphoheptose isomerase compare
CSW01_15870 -0.6 -1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_15705 -0.6 -1.8 DUF3265 domain-containing protein compare
CSW01_00495 -0.6 -0.5 SOS-response transcriptional repressor compare
CSW01_12815 -0.6 -3.8 RNA polymerase sigma-54 factor compare
CSW01_13420 -0.6 -1.4 elongation factor P--(R)-beta-lysine ligase compare
CSW01_08620 -0.6 -4.2 chromosome partition protein MukB compare
CSW01_14810 -0.6 -2.9 tryptophanase leader peptide compare
CSW01_08435 -0.6 -2.2 phage shock protein PspA compare
CSW01_06585 -0.6 -1.3 fumarate hydratase compare
CSW01_06030 -0.6 -1.4 helicase compare
CSW01_10165 -0.6 -4.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_16785 -0.6 -1.7 hypothetical protein compare
CSW01_18420 -0.6 -2.3 hypothetical protein compare
CSW01_15120 -0.6 -1.8 iron(III) ABC transporter permease compare
CSW01_06435 -0.6 -1.7 C4-dicarboxylate ABC transporter compare
CSW01_19415 -0.6 -1.6 hypothetical protein compare
CSW01_11565 -0.6 -1.8 transcriptional regulator NrdR compare
CSW01_19130 -0.6 -2.9 FAA hydrolase family protein compare
CSW01_10560 -0.6 -2.2 chorismate synthase compare
CSW01_05090 -0.5 -2.5 tRNA pseudouridine(38-40) synthase TruA compare
CSW01_04910 -0.5 -1.8 PhoH family protein compare
CSW01_10255 -0.5 -1.0 cytochrome c-type biogenesis protein CcmH compare
CSW01_04650 -0.5 -0.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_12005 -0.5 -1.0 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_15740 -0.5 -2.3 hypothetical protein compare
CSW01_16230 -0.5 -1.5 DUF645 domain-containing protein compare
CSW01_07435 -0.5 -0.9 hypothetical protein compare
CSW01_15560 -0.5 -1.2 lipocalin compare
CSW01_08450 -0.5 -0.9 antimicrobial peptide ABC transporter permease SapB compare
CSW01_04845 -0.5 -2.6 D-alanyl-D-alanine carboxypeptidase compare
CSW01_09485 -0.5 -1.7 DUF1425 domain-containing protein compare
CSW01_17090 -0.5 -2.6 SPOR domain-containing protein compare
CSW01_13565 -0.5 -2.0 cell division protein ZapB compare
CSW01_15060 -0.5 -1.3 hypothetical protein compare
CSW01_11700 -0.5 -1.1 hypothetical protein compare
CSW01_07820 -0.5 -1.9 RidA family protein compare
CSW01_01195 -0.5 -0.8 ADP-heptose--LPS heptosyltransferase I compare
CSW01_06415 -0.5 -1.1 MBL fold metallo-hydrolase compare
CSW01_11915 -0.5 -1.8 hypothetical protein compare
CSW01_08550 -0.5 -2.2 hypothetical protein compare
CSW01_12320 -0.5 -1.0 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_05020 -0.5 -1.6 regulatory protein ToxS compare
CSW01_07195 -0.5 -1.5 cytochrome biogenesis protein compare
CSW01_16575 -0.5 -1.5 acetyltransferase compare
CSW01_04660 -0.5 -3.6 PTS trehalose transporter subunit IIBC compare
CSW01_05240 -0.5 -1.4 CBS domain-containing protein compare
CSW01_03695 -0.5 -2.1 ribosomal large subunit pseudouridine synthase D compare
CSW01_11000 -0.5 -1.1 hypothetical protein compare
CSW01_19600 -0.5 -2.5 hypothetical protein compare
CSW01_00280 -0.5 -2.8 shikimate dehydrogenase compare
CSW01_15310 -0.4 -1.5 exoribonuclease R compare
CSW01_18545 -0.4 -3.3 non-hemolytic enterotoxin lytic component L1 compare
CSW01_15105 -0.4 -2.5 class II glutamine amidotransferase compare
CSW01_11080 -0.4 -3.3 transcriptional regulator compare
CSW01_19555 -0.4 -1.7 response regulator compare
CSW01_08240 -0.4 -1.2 ATP-binding protein compare
CSW01_17555 -0.4 -2.0 LacI family transcriptional regulator compare
CSW01_16255 -0.4 -1.7 hypothetical protein compare
CSW01_03065 -0.4 -0.7 ClpXP protease specificity-enhancing factor compare
CSW01_08395 -0.4 -2.7 cardiolipin synthase compare
CSW01_12465 -0.4 -1.6 elongation factor 4 compare
CSW01_02490 -0.4 -2.1 glutathione synthetase compare
CSW01_09045 -0.4 -2.5 hypothetical protein compare
CSW01_07145 -0.4 -1.4 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_19545 -0.4 -2.2 chemotaxis protein CheW compare
CSW01_14965 -0.4 -1.0 hypothetical protein compare
CSW01_08665 -0.4 -1.1 DNA transformation protein compare
CSW01_15430 -0.4 -1.4 hypothetical protein compare
CSW01_09955 -0.4 -2.1 L-asparaginase 1 compare
CSW01_04315 -0.4 -2.3 TCP pilus virulence regulatory protein compare
CSW01_13410 -0.4 -1.8 protein-export protein SecB compare
CSW01_18525 -0.4 -1.0 integrase compare
CSW01_01875 -0.4 -1.4 hypothetical protein compare
CSW01_09840 -0.4 -3.0 o-succinylbenzoate--CoA ligase compare
CSW01_17000 -0.4 -0.7 DUF3332 domain-containing protein compare
CSW01_10195 -0.4 -1.7 hypothetical protein compare
CSW01_06875 -0.4 -1.8 7-cyano-7-deazaguanine synthase QueC compare
CSW01_18115 -0.4 -2.7 molecular chaperone DnaJ compare
CSW01_03055 -0.4 -1.3 cytochrome c1 compare
CSW01_14100 -0.4 -1.0 hypothetical protein compare
CSW01_09920 -0.4 -1.0 chromosome partitioning protein ParA compare
CSW01_13670 -0.4 -0.9 DNA-directed RNA polymerase subunit omega compare
CSW01_03045 -0.4 -1.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_12680 -0.4 -2.7 cytosol aminopeptidase compare
CSW01_07620 -0.4 -1.1 DUF3305 domain-containing protein compare
CSW01_11730 -0.4 -0.9 2-dehydropantoate 2-reductase compare
CSW01_16325 -0.4 -0.8 hypothetical protein compare
CSW01_09625 -0.4 -0.8 hypothetical protein compare
CSW01_04195 -0.4 -2.2 class I SAM-dependent methyltransferase compare
CSW01_07720 -0.4 -0.7 DUF3802 domain-containing protein compare
CSW01_13220 -0.4 -0.9 hypothetical protein compare
CSW01_11230 -0.4 -1.9 chemotaxis protein methyltransferase 1 compare
CSW01_16730 -0.4 -1.7 glutathione S-transferase compare
CSW01_19275 -0.4 -1.8 amino acid ABC transporter ATP-binding protein compare
CSW01_18090 -0.4 -2.0 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
CSW01_01845 -0.4 -2.6 protease modulator HflK compare
CSW01_11780 -0.4 -0.6 exodeoxyribonuclease V subunit beta compare
CSW01_16085 -0.4 -1.2 hypothetical protein compare
CSW01_17075 -0.4 -1.8 stress response translation initiation inhibitor YciH compare
CSW01_14475 -0.4 -1.5 cobinamide adenolsyltransferase compare
CSW01_16040 -0.4 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_19095 -0.4 -1.3 DUF445 domain-containing protein compare
CSW01_19525 -0.4 -1.8 chemoreceptor glutamine deamidase CheD compare
CSW01_07160 -0.4 -2.0 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_04320 -0.4 -2.4 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_05590 -0.4 -1.7 DNA-binding protein VF530 compare
CSW01_19510 -0.4 -1.1 anti-sigma factor antagonist compare
CSW01_11710 -0.4 -2.1 transcriptional regulator compare
CSW01_02755 -0.4 -0.6 glutamyl-tRNA amidotransferase compare
CSW01_17385 -0.4 -0.7 antibiotic biosynthesis monooxygenase compare
CSW01_10570 -0.4 -2.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
CSW01_12895 -0.4 -1.4 gamma-glutamylcyclotransferase compare
CSW01_08220 -0.4 -1.2 16S rRNA pseudouridine(516) synthase compare
CSW01_10260 -0.4 -1.2 thiol:disulfide interchange protein DsbE compare
CSW01_18155 -0.4 -1.3 HAD family hydrolase compare
CSW01_16195 -0.4 -0.6 DUF645 domain-containing protein compare
CSW01_19395 -0.4 -0.6 histidine kinase compare
CSW01_14300 -0.4 -2.1 purine-nucleoside phosphorylase compare
CSW01_09035 -0.4 -1.2 IclR family transcriptional regulator compare
CSW01_04900 -0.4 -1.9 magnesium and cobalt efflux protein CorC compare
CSW01_18170 -0.4 -2.1 inosine/guanosine kinase compare
CSW01_07230 -0.4 -1.8 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_05025 -0.4 -2.0 transcriptional regulator compare
CSW01_00900 -0.4 -0.8 hypothetical protein compare
CSW01_08190 -0.3 -2.7 ABC transporter permease compare
CSW01_07000 -0.3 -1.7 response regulator compare
CSW01_08730 -0.3 -1.2 phage-shock protein compare
CSW01_11125 -0.3 -1.4 hypothetical protein compare
CSW01_18400 -0.3 -1.9 outer membrane lipoprotein-sorting protein compare
CSW01_01225 -0.3 -2.0 capsular biosynthesis protein compare
CSW01_13730 -0.3 -1.9 ADP compounds hydrolase NudE compare
CSW01_18495 -0.3 -0.7 cytochrome bd-I oxidase subunit CydX compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_anaerobic experiments

For lb_anaerobic LB across organisms