Experiment set5IT085 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Anaerobic_180MIN_ZN16B

200 most detrimental genes:

  gene name fitness t score description  
CSW01_18560 +1.7 2.2 hypothetical protein compare
CSW01_07580 +1.6 3.1 hypothetical protein compare
CSW01_16690 +1.3 2.4 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_08070 +1.2 1.6 hypothetical protein compare
CSW01_10300 +1.0 4.9 chemotaxis protein CheW compare
CSW01_10670 +0.9 6.7 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_10665 +0.9 8.3 PAS domain-containing sensor histidine kinase compare
CSW01_10655 +0.9 2.7 flagellar hook-basal body complex protein FliE compare
CSW01_10345 +0.9 6.3 flagellar biosynthesis protein FlhF compare
CSW01_10605 +0.9 1.7 flagellar motor switch protein FliN compare
CSW01_11195 +0.9 4.5 flagellar L-ring protein compare
CSW01_10660 +0.9 7.2 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_10675 +0.9 5.6 flagellar protein FliS compare
CSW01_04580 +0.9 5.8 flagellar motor protein MotB compare
CSW01_10650 +0.9 7.4 flagellar basal body M-ring protein FliF compare
CSW01_10600 +0.8 2.6 flagellar biosynthetic protein FliO compare
CSW01_10035 +0.8 1.6 YnhF family membrane protein compare
CSW01_10350 +0.8 7.3 flagellar biosynthesis protein FlhA compare
CSW01_10595 +0.8 5.5 flagellar biosynthetic protein FliP compare
CSW01_11250 +0.8 5.2 molecular chaperone compare
CSW01_10640 +0.8 5.9 flagellar assembly protein FliH compare
CSW01_10680 +0.8 4.8 flagellar protein FliT compare
CSW01_11225 +0.8 5.6 flagellar basal body rod protein FlgB compare
CSW01_10335 +0.8 5.7 RNA polymerase sigma factor FliA compare
CSW01_11265 +0.8 5.5 flagellar basal-body protein compare
CSW01_13450 +0.8 2.1 EF-P beta-lysylation protein EpmB compare
CSW01_07135 +0.8 3.3 chromosome partitioning protein ParA compare
CSW01_03880 +0.8 1.4 HTH-type transcriptional regulator IscR compare
CSW01_11200 +0.7 5.3 flagellar basal-body rod protein FlgG compare
CSW01_17395 +0.7 2.8 hypothetical protein compare
CSW01_11190 +0.7 5.0 flagellar P-ring protein compare
CSW01_12780 +0.7 2.1 hypothetical protein compare
CSW01_16900 +0.7 1.1 twin-arginine translocase TatA/TatE family subunit compare
CSW01_05130 +0.7 5.3 flagellar protein MotY compare
CSW01_09220 +0.7 1.1 cyd operon protein YbgE compare
CSW01_11210 +0.7 5.4 flagellar hook protein FlgE compare
CSW01_11205 +0.7 4.5 flagellar basal-body rod protein FlgF compare
CSW01_17750 +0.7 0.9 cytochrome B compare
CSW01_10645 +0.7 5.8 flagellar motor switch protein FliG compare
CSW01_08685 +0.7 2.3 glycogen synthase compare
CSW01_11175 +0.7 3.9 flagellar hook-associated protein 3 compare
CSW01_10585 +0.7 5.2 flagellar type III secretion system protein FliR compare
CSW01_10635 +0.7 5.4 flagellum-specific ATP synthase FliI compare
CSW01_04575 +0.7 4.6 flagellar motor protein PomA compare
CSW01_10685 +0.7 5.6 flagellar hook-associated protein 2 compare
CSW01_10295 +0.7 2.2 DUF2802 domain-containing protein compare
CSW01_10580 +0.7 4.7 flagellar biosynthesis protein FlhB compare
CSW01_17675 +0.7 4.7 GGDEF domain-containing protein compare
CSW01_01325 +0.7 2.7 acetyltransferase compare
CSW01_02160 +0.7 4.3 MSHA pilin protein MshC compare
CSW01_02115 +0.7 5.5 MSHA biogenesis protein MshK compare
CSW01_09440 +0.7 3.5 PilZ domain-containing protein compare
CSW01_13445 +0.7 1.0 elongation factor P compare
CSW01_10080 +0.7 2.3 4-amino-4-deoxychorismate lyase compare
CSW01_11180 +0.7 5.0 flagellar hook-associated protein FlgK compare
CSW01_13165 +0.6 5.0 sel1 repeat family protein compare
CSW01_02130 +0.6 5.5 MSHA biogenesis protein MshN compare
CSW01_10155 +0.6 1.2 C4-dicarboxylate ABC transporter compare
CSW01_10235 +0.6 2.1 hypothetical protein compare
CSW01_07175 +0.6 2.8 DUF2987 domain-containing protein compare
CSW01_03815 +0.6 2.1 peroxidase compare
CSW01_02110 +0.6 4.3 MSHA biogenesis protein MshJ compare
CSW01_07150 +0.6 1.9 spermidine/putrescine ABC transporter permease PotC compare
CSW01_06375 +0.6 1.2 hypothetical protein compare
CSW01_10620 +0.6 4.6 flagellar hook-length control protein FliK compare
CSW01_18685 +0.6 0.8 heme utilization cystosolic carrier protein HutX compare
CSW01_11220 +0.6 2.2 flagellar basal body rod protein FlgC compare
CSW01_10500 +0.6 2.0 CidA/LrgA family protein compare
CSW01_06235 +0.6 1.9 hypothetical protein compare
CSW01_19125 +0.6 2.1 branched-chain amino acid ABC transporter compare
CSW01_13415 +0.6 1.9 rhodanese-like domain-containing protein compare
CSW01_09550 +0.6 1.8 DNA repair protein compare
CSW01_06810 +0.6 0.9 hypothetical protein compare
CSW01_18150 +0.6 0.8 transcription initiation factor TFIIIB compare
CSW01_09275 +0.6 1.7 hypothetical protein compare
CSW01_02220 +0.6 4.6 metalloprotease TldD compare
CSW01_11170 +0.6 4.3 flagellin A compare
CSW01_17830 +0.6 1.1 hypothetical protein compare
CSW01_02155 +0.6 4.1 MSHA pilin protein MshA compare
CSW01_10630 +0.6 2.4 flagella biosynthesis chaperone FliJ compare
CSW01_02105 +0.6 4.6 MSHA biogenesis protein MshI compare
CSW01_10610 +0.6 3.2 flagellar motor switch protein FliM compare
CSW01_18840 +0.5 2.6 hypothetical protein compare
CSW01_11215 +0.5 2.3 flagellar hook assembly protein FlgD compare
CSW01_00515 +0.5 1.9 hypothetical protein compare
CSW01_03070 +0.5 1.3 hemolysin compare
CSW01_02140 +0.5 4.8 type II secretion system F family protein compare
CSW01_19240 +0.5 2.1 DUF2999 domain-containing protein compare
CSW01_10700 +0.5 2.9 flagellin D compare
CSW01_12245 +0.5 2.8 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
CSW01_15595 +0.5 1.1 hypothetical protein compare
CSW01_05010 +0.5 3.2 phosphodiesterase compare
CSW01_02150 +0.5 3.4 MSHA biogenesis protein MshB compare
CSW01_07810 +0.5 2.3 glycerophosphoryl diester phosphodiesterase compare
CSW01_02120 +0.5 4.5 pilus (MSHA type) biogenesis protein MshL compare
CSW01_02180 +0.5 4.9 MSHA biogenesis protein MshQ compare
CSW01_18285 +0.5 1.9 4a-hydroxytetrahydrobiopterin dehydratase compare
CSW01_05225 +0.5 1.1 molybdopterin synthase sulfur carrier subunit compare
CSW01_09250 +0.5 0.8 crossover junction endodeoxyribonuclease RuvC compare
CSW01_16130 +0.5 0.8 acetyltransferase compare
CSW01_04495 +0.5 1.7 hypothetical protein compare
CSW01_02170 +0.5 4.3 type II secretion system protein compare
CSW01_02125 +0.5 3.8 MSHA biogenesis protein MshM compare
CSW01_02165 +0.5 3.8 MSHA pilin protein MshD compare
CSW01_05925 +0.5 1.9 tryptophan synthase subunit alpha compare
CSW01_13295 +0.5 4.4 cell division protein DamX compare
CSW01_03740 +0.5 3.0 oxygen-insensitive NADPH nitroreductase compare
CSW01_02135 +0.5 4.1 MSHA biogenesis protein MshE compare
CSW01_02020 +0.5 1.4 phosphoadenosine phosphosulfate reductase compare
CSW01_16185 +0.5 1.7 DUF3265 domain-containing protein compare
CSW01_18725 +0.5 1.2 TetR/AcrR family transcriptional regulator compare
CSW01_09990 +0.5 1.5 hypothetical protein compare
CSW01_09215 +0.5 1.9 tol-pal system-associated acyl-CoA thioesterase compare
CSW01_11630 +0.5 2.1 DUF2884 domain-containing protein compare
CSW01_06035 +0.5 0.8 hypothetical protein compare
CSW01_01915 +0.5 1.6 bacterioferritin-associated ferredoxin compare
CSW01_12845 +0.5 3.3 metalloprotease PmbA compare
CSW01_04135 +0.5 1.9 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
CSW01_08755 +0.5 2.6 DUF1496 domain-containing protein compare
CSW01_08480 +0.5 2.0 manganese-dependent inorganic pyrophosphatase compare
CSW01_03870 +0.5 0.5 inositol monophosphatase compare
CSW01_11625 +0.5 2.8 diguanylate cyclase compare
CSW01_15845 +0.5 2.4 DUF3265 domain-containing protein compare
CSW01_16140 +0.5 1.2 DUF645 domain-containing protein compare
CSW01_03100 +0.5 3.2 TetR/AcrR family transcriptional regulator compare
CSW01_11240 +0.5 2.3 flagella basal body P-ring formation protein FlgA compare
CSW01_05270 +0.5 3.0 iron-sulfur cluster carrier protein ApbC compare
CSW01_08700 +0.5 2.0 DUF2498 domain-containing protein compare
CSW01_09105 +0.4 2.1 SDR family oxidoreductase compare
CSW01_19010 +0.4 2.4 methyl-accepting chemotaxis protein compare
CSW01_02175 +0.4 3.6 MSHA biogenesis protein MshP compare
CSW01_16290 +0.4 0.8 DUF1289 domain-containing protein compare
CSW01_09815 +0.4 1.6 TetR/AcrR family transcriptional regulator compare
CSW01_11420 +0.4 2.3 cytochrome C biogenesis protein CcsB compare
CSW01_09600 +0.4 1.4 DNA-binding protein HU-beta compare
CSW01_12610 +0.4 1.2 3-isopropylmalate dehydratase small subunit compare
CSW01_04940 +0.4 0.7 hypothetical protein compare
CSW01_02460 +0.4 3.5 type IV pili twitching motility protein PilT compare
CSW01_06335 +0.4 1.4 (2Fe-2S)-binding protein compare
CSW01_05915 +0.4 1.7 thymidine kinase compare
CSW01_07225 +0.4 1.8 cytochrome-c oxidase, cbb3-type subunit II compare
CSW01_10790 +0.4 2.0 arsenate reductase (glutaredoxin) compare
CSW01_15975 +0.4 2.5 nitrate reductase compare
CSW01_15695 +0.4 1.3 DUF3265 domain-containing protein compare
CSW01_18475 +0.4 1.9 D-alanyl-D-alanine endopeptidase compare
CSW01_03660 +0.4 2.0 trp operon repressor compare
CSW01_08355 +0.4 1.5 heat-shock protein HslJ compare
CSW01_00780 +0.4 1.9 hypothetical protein compare
CSW01_07615 +0.4 2.3 DUF3306 domain-containing protein compare
CSW01_07240 +0.4 2.9 histidine kinase compare
CSW01_10590 +0.4 1.3 flagellar biosynthetic protein FliQ compare
CSW01_07445 +0.4 1.6 macrodomain Ter protein MatP compare
CSW01_03505 +0.4 2.2 hypothetical protein compare
CSW01_08055 +0.4 1.4 amino acid ABC transporter substrate-binding protein compare
CSW01_15965 +0.4 0.8 DUF645 domain-containing protein compare
CSW01_16585 +0.4 1.2 acetyltransferase compare
CSW01_05660 +0.4 1.5 dethiobiotin synthase compare
CSW01_03635 +0.4 2.5 3-deoxy-7-phosphoheptulonate synthase compare
CSW01_06860 +0.4 1.4 siroheme synthase compare
CSW01_12920 +0.4 2.0 DUF2607 domain-containing protein compare
CSW01_05840 +0.4 2.6 DUF340 domain-containing protein compare
CSW01_08095 +0.4 1.6 ATP-binding protein compare
CSW01_01865 +0.4 2.7 hypothetical protein compare
CSW01_17320 +0.4 1.2 hypothetical protein compare
CSW01_11185 +0.4 2.6 flagellar assembly peptidoglycan hydrolase FlgJ compare
CSW01_18870 +0.4 1.9 transcriptional regulator compare
CSW01_01125 +0.4 2.5 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_18230 +0.4 1.4 agmatinase compare
CSW01_16850 +0.4 2.3 hybrid sensor histidine kinase/response regulator compare
CSW01_01975 +0.4 2.8 chemotaxis protein CheX compare
CSW01_17050 +0.4 2.2 histidine kinase compare
CSW01_18805 +0.4 2.1 hypothetical protein compare
CSW01_00170 +0.4 2.4 thiol:disulfide interchange protein DsbA compare
CSW01_09010 +0.4 0.9 hypothetical protein compare
CSW01_06610 +0.4 1.2 30S ribosomal protein S5 alanine N-acetyltransferase compare
CSW01_07515 +0.4 1.9 tail-specific protease compare
CSW01_01280 +0.4 3.3 GDP-mannose 4,6-dehydratase compare
CSW01_03760 +0.4 2.3 phosphate regulon transcriptional regulatory protein PhoB compare
CSW01_15100 +0.4 1.2 hypothetical protein compare
CSW01_00675 +0.4 0.7 hypothetical protein compare
CSW01_03510 +0.4 2.3 NADP(H)-dependent aldo-keto reductase compare
CSW01_08495 +0.4 1.6 hypothetical protein compare
CSW01_17055 +0.4 1.8 DNA-binding response regulator compare
CSW01_03865 +0.4 2.5 protein translocase subunit SecF compare
CSW01_08005 +0.4 1.7 UDP-glucose--hexose-1-phosphate uridylyltransferase compare
CSW01_09145 +0.4 1.6 PTS fructose transporter subunit IIA compare
CSW01_08645 +0.4 1.8 two-component system response regulator TorR compare
CSW01_18835 +0.4 0.9 acyl-CoA thioesterase compare
CSW01_12415 +0.4 2.7 two-component sensor histidine kinase BarA compare
CSW01_10505 +0.3 2.2 LysR family transcriptional regulator compare
CSW01_12730 +0.3 1.7 aspartate carbamoyltransferase regulatory subunit compare
CSW01_18660 +0.3 2.2 glycerate kinase compare
CSW01_07040 +0.3 2.5 methyl-accepting chemotaxis protein compare
CSW01_09940 +0.3 2.0 formyltetrahydrofolate deformylase compare
CSW01_05845 +0.3 2.2 HDOD domain-containing protein compare
CSW01_06020 +0.3 1.6 transporter compare
CSW01_06900 +0.3 1.8 hypothetical protein compare
CSW01_12225 +0.3 1.6 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
CSW01_08825 +0.3 1.8 integrase compare
CSW01_03610 +0.3 2.2 N-acetylmuramic acid 6-phosphate etherase compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_anaerobic experiments

For lb_anaerobic LB across organisms