Experiment set5IT084 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5527 -4.0 -2.7 Cold shock protein CspC compare
Pf6N2E2_2219 -3.9 -2.6 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3661 -3.5 -2.4 hypothetical protein compare
Pf6N2E2_3460 -3.3 -2.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2506 -3.1 -13.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5406 -3.1 -3.0 FIG00958224: hypothetical protein compare
Pf6N2E2_3658 -2.9 -6.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5252 -2.9 -2.7 FIG00956396: hypothetical protein compare
Pf6N2E2_5337 -2.7 -5.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4057 -2.5 -1.2 lipoprotein, putative compare
Pf6N2E2_4803 -2.4 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3659 -2.3 -5.5 Protein fixF compare
Pf6N2E2_5508 -2.3 -2.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4369 -2.2 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3240 -2.2 -1.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2127 -2.2 -4.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2218 -2.2 -4.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3839 -2.1 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3179 -2.1 -3.3 FIG021952: putative membrane protein compare
Pf6N2E2_5339 -2.1 -6.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3847 -2.0 -4.0 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5727 -2.0 -5.0 FIG00955360: hypothetical protein compare
Pf6N2E2_3252 -1.9 -5.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5069 -1.9 -5.3 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2217 -1.9 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2472 -1.9 -4.9 hypothetical protein compare
Pf6N2E2_2586 -1.9 -2.3 Hpt domain protein compare
Pf6N2E2_5705 -1.8 -2.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4416 -1.8 -2.7 Tyrosine recombinase XerC compare
Pf6N2E2_3635 -1.8 -3.1 FIG00953138: hypothetical protein compare
Pf6N2E2_3461 -1.8 -2.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4993 -1.8 -2.5 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2126 -1.8 -5.0 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2510 -1.7 -4.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2473 -1.7 -1.7 Major outer membrane lipoprotein I compare
Pf6N2E2_2508 -1.7 -3.5 hypothetical protein compare
Pf6N2E2_3783 -1.7 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3782 -1.7 -3.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3261 -1.7 -4.5 hypothetical protein compare
Pf6N2E2_3303 -1.7 -3.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5338 -1.7 -6.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5316 -1.7 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4984 -1.7 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2261 -1.7 -5.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_3198 -1.6 -1.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2317 -1.6 -3.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2318 -1.6 -6.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2507 -1.6 -5.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5571 -1.6 -1.6 hypothetical protein compare
Pf6N2E2_2487 -1.6 -1.4 FIG00956090: hypothetical protein compare
Pf6N2E2_3373 -1.6 -2.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5150 -1.6 -4.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2514 -1.5 -3.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2384 -1.5 -3.2 CmpX compare
Pf6N2E2_5006 -1.5 -6.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4638 -1.5 -2.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5068 -1.5 -7.8 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2064 -1.5 -2.6 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5219 -1.5 -6.6 FIG140336: TPR domain protein compare
Pf6N2E2_3791 -1.5 -6.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3611 -1.5 -1.4 HflC protein compare
Pf6N2E2_3282 -1.5 -2.2 FIG005080: Possible exported protein compare
Pf6N2E2_2311 -1.5 -5.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5950 -1.5 -2.8 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2513 -1.4 -3.5 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2574 -1.4 -1.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_4276 -1.4 -4.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2088 -1.4 -2.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2646 -1.4 -1.2 FIG00953416: hypothetical protein compare
Pf6N2E2_4889 -1.4 -4.9 Putative transport protein compare
Pf6N2E2_156 -1.4 -1.4 Carbon storage regulator compare
Pf6N2E2_3842 -1.4 -2.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4918 -1.4 -2.3 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_2264 -1.4 -3.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2509 -1.4 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4159 -1.4 -3.1 Cytochrome c4 compare
Pf6N2E2_288 -1.4 -1.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4928 -1.3 -1.8 Permeases of the major facilitator superfamily compare
Pf6N2E2_3199 -1.3 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_2124 -1.3 -1.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_868 -1.3 -2.0 Transcriptional regulator, HxlR family compare
Pf6N2E2_5342 -1.3 -2.6 21 kDa hemolysin precursor compare
Pf6N2E2_613 -1.3 -1.5 lipoprotein, putative compare
Pf6N2E2_3942 -1.3 -6.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2313 -1.3 -2.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_687 -1.3 -2.2 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_3841 -1.2 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4204 -1.2 -1.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5430 -1.2 -5.7 Transglycosylase, Slt family compare
Pf6N2E2_3475 -1.2 -0.9 hypothetical protein compare
Pf6N2E2_3834 -1.2 -4.7 Lipoprotein NlpD compare
Pf6N2E2_4187 -1.2 -3.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3253 -1.2 -4.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3786 -1.2 -2.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_595 -1.2 -2.0 Arsenical resistance operon repressor compare
Pf6N2E2_623 -1.2 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_2825 -1.2 -2.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4611 -1.2 -2.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4014 -1.2 -5.8 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_1031 -1.2 -2.9 Alkanesulfonates transport system permease protein compare
Pf6N2E2_3607 -1.2 -5.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2746 -1.2 -4.5 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_2071 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_3908 -1.2 -4.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4206 -1.1 -1.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3792 -1.1 -3.9 Glucans biosynthesis protein G precursor compare
Pf6N2E2_1215 -1.1 -1.9 probable membrane protein YPO2362 compare
Pf6N2E2_6095 -1.1 -2.2 tRNA-Asn-GTT compare
Pf6N2E2_70 -1.1 -2.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2310 -1.1 -5.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5328 -1.1 -2.4 FIG00958649: hypothetical protein compare
Pf6N2E2_4762 -1.1 -2.0 Biotin synthesis protein BioH compare
Pf6N2E2_3264 -1.1 -2.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3940 -1.1 -5.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3610 -1.1 -3.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1966 -1.1 -1.9 SAM-dependent methyltransferases compare
Pf6N2E2_4779 -1.1 -3.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_2425 -1.1 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5622 -1.1 -2.1 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_3039 -1.1 -3.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4680 -1.1 -2.9 HTH-type transcriptional regulator BetI compare
Pf6N2E2_2753 -1.1 -1.6 HtrA protease/chaperone protein compare
Pf6N2E2_4451 -1.1 -3.3 FIG139438: lipoprotein B compare
Pf6N2E2_1691 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_2180 -1.1 -2.2 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5986 -1.1 -0.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5830 -1.0 -2.7 FIG00960829: hypothetical protein compare
Pf6N2E2_3429 -1.0 -2.7 hypothetical protein compare
Pf6N2E2_5671 -1.0 -2.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_1034 -1.0 -1.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4372 -1.0 -3.4 FIG00460773: hypothetical protein compare
Pf6N2E2_5704 -1.0 -3.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_4700 -1.0 -3.0 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_3588 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_5667 -1.0 -3.4 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1838 -1.0 -2.1 6-hexanolactone hydrolase compare
Pf6N2E2_2274 -1.0 -3.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_1848 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_64 -1.0 -2.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4969 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_819 -1.0 -2.1 Response regulator compare
Pf6N2E2_2474 -1.0 -5.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_600 -1.0 -2.4 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3257 -1.0 -2.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4263 -0.9 -2.5 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_2300 -0.9 -2.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_5014 -0.9 -1.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2752 -0.9 -4.2 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4352 -0.9 -1.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5669 -0.9 -3.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_1545 -0.9 -2.6 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5678 -0.9 -3.9 hypothetical protein compare
Pf6N2E2_4826 -0.9 -4.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_6063 -0.9 -3.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4987 -0.9 -0.8 MaoC-like domain protein compare
Pf6N2E2_3192 -0.9 -2.0 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_469 -0.9 -1.5 lipoprotein, putative compare
Pf6N2E2_4678 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_2578 -0.9 -2.1 Flagellar biosynthesis protein FliR compare
Pf6N2E2_3074 -0.9 -1.0 FIG00960973: hypothetical protein compare
Pf6N2E2_445 -0.8 -2.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_122 -0.8 -1.9 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5292 -0.8 -3.1 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_6085 -0.8 -1.6 Aha1 domain superfamily compare
Pf6N2E2_2706 -0.8 -1.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_1548 -0.8 -2.4 Lactoylglutathione lyase compare
Pf6N2E2_959 -0.8 -1.9 putative membrane protein compare
Pf6N2E2_2320 -0.8 -1.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_133 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_5242 -0.8 -1.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_698 -0.8 -1.3 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_1959 -0.8 -2.5 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_1081 -0.8 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_3516 -0.8 -1.8 Probable transmembrane protein compare
Pf6N2E2_5345 -0.8 -4.2 LppC putative lipoprotein compare
Pf6N2E2_1371 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_3948 -0.8 -4.2 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5155 -0.8 -1.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3258 -0.8 -2.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5531 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_342 -0.8 -1.0 DNA-binding response regulator compare
Pf6N2E2_3569 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_2479 -0.8 -1.9 Transcription elongation factor GreB compare
Pf6N2E2_40 -0.8 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1792 -0.8 -2.0 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_2822 -0.8 -3.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_1783 -0.8 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2112 -0.8 -2.5 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) compare
Pf6N2E2_3713 -0.8 -1.8 Acyl carrier protein compare
Pf6N2E2_2823 -0.8 -2.5 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_339 -0.8 -1.4 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_1987 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_3550 -0.8 -1.7 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_663 -0.8 -1.5 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_1128 -0.8 -1.2 Two-component response regulator compare
Pf6N2E2_3004 -0.8 -1.9 Prophage baseplate assembly protein V compare
Pf6N2E2_3829 -0.8 -2.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_96 -0.8 -2.4 FIG011065: hypothetical protein compare
Pf6N2E2_4732 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_3521 -0.7 -3.8 Sensor histidine kinase/response regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments