Experiment set5IT084 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Isoleucine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO356_14440 -5.7 -4.0 indole-3-glycerol-phosphate synthase compare
AO356_08635 -5.6 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
AO356_20880 -5.6 -3.8 3-methylitaconate isomerase compare
AO356_09815 -5.4 -5.2 imidazoleglycerol-phosphate dehydratase compare
AO356_21405 -5.4 -5.2 3-isopropylmalate dehydratase compare
AO356_21415 -5.2 -10.0 3-isopropylmalate dehydrogenase compare
AO356_18325 -5.1 -11.0 argininosuccinate synthase compare
AO356_03810 -5.1 -4.9 anti-anti-sigma factor compare
AO356_13085 -5.0 -9.1 N-acetylglutamate synthase compare
AO356_09525 -4.9 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_09810 -4.8 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
AO356_06970 -4.8 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_06550 -4.8 -12.3 2-isopropylmalate synthase compare
AO356_21465 -4.8 -4.6 amidophosphoribosyltransferase compare
AO356_18275 -4.7 -12.1 ornithine carbamoyltransferase compare
AO356_14435 -4.7 -6.4 anthranilate phosphoribosyltransferase compare
AO356_06965 -4.7 -7.8 histidinol dehydrogenase compare
AO356_14420 -4.7 -13.1 anthranilate synthase compare
AO356_12525 -4.6 -9.4 acetylglutamate kinase compare
AO356_09725 -4.6 -8.3 histidine kinase compare
AO356_13250 -4.6 -9.8 dihydroxy-acid dehydratase compare
AO356_09520 -4.6 -5.4 phosphoribosyl-AMP cyclohydrolase compare
AO356_10915 -4.6 -10.2 tryptophan synthase subunit beta compare
AO356_24845 -4.5 -4.3 ATPase compare
AO356_15165 -4.5 -3.1 protein cII compare
AO356_12520 -4.3 -3.0 orotate phosphoribosyltransferase compare
AO356_19520 -4.3 -5.8 isochorismatase compare
AO356_09800 -4.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_10910 -4.2 -9.0 tryptophan synthase subunit alpha compare
AO356_21440 -4.2 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_22970 -4.1 -6.7 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) conserved
AO356_08905 -4.1 -4.9 glycosyl transferase compare
AO356_09730 -4.1 -7.4 nitrogen regulation protein NR(I) compare
AO356_13405 -4.1 -10.6 methionine biosynthesis protein MetW compare
AO356_13410 -4.1 -12.5 homoserine O-acetyltransferase compare
AO356_16175 -4.0 -8.5 acetolactate synthase 3 regulatory subunit compare
AO356_14430 -4.0 -9.2 anthranilate synthase compare
AO356_06050 -3.9 -14.5 protein-PII uridylyltransferase compare
AO356_13605 -3.8 -8.9 5,10-methylenetetrahydrofolate reductase compare
AO356_20830 -3.8 -5.1 phosphoadenosine phosphosulfate reductase compare
AO356_16170 -3.8 -12.0 acetolactate synthase 3 catalytic subunit compare
AO356_16075 -3.7 -4.4 Fis family transcriptional regulator compare
AO356_19795 -3.7 -3.5 glycerol-3-phosphate dehydrogenase compare
AO356_16180 -3.6 -15.2 ketol-acid reductoisomerase compare
AO356_12020 -3.6 -14.0 pyruvate carboxylase subunit A compare
AO356_21470 -3.6 -8.0 O-succinylhomoserine sulfhydrylase compare
AO356_19085 -3.5 -9.1 phosphoribosylglycinamide formyltransferase compare
AO356_02175 -3.5 -7.1 transaldolase compare
AO356_12780 -3.5 -8.7 argininosuccinate lyase compare
AO356_17520 -3.5 -2.4 phosphoribosylformylglycinamidine synthase compare
AO356_21400 -3.5 -6.1 isopropylmalate isomerase compare
AO356_17950 -3.4 -8.6 histidine kinase compare
AO356_16750 -3.4 -9.5 antibiotic biosynthesis monooxygenase conserved
AO356_16050 -3.3 -2.3 glucose-6-phosphate isomerase compare
AO356_16095 -3.3 -9.2 molecular chaperone DnaK compare
AO356_09795 -3.2 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
AO356_12025 -3.2 -13.0 pyruvate carboxylase subunit B compare
AO356_20875 -3.1 -9.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_24485 -3.1 -3.5 SAM-dependent methyltransferase compare
AO356_19060 -3.1 -16.2 (p)ppGpp synthetase compare
AO356_08735 -2.9 -11.4 phosphoserine phosphatase compare
AO356_19090 -2.9 -3.9 phosphoribosylaminoimidazole synthetase compare
AO356_12015 -2.9 -12.3 LysR family transcriptional regulator compare
AO356_12895 -2.8 -19.6 polyphosphate kinase compare
AO356_10340 -2.8 -13.8 phosphoserine phosphatase compare
AO356_11315 -2.7 -1.9 shikimate dehydrogenase compare
AO356_03180 -2.6 -5.7 CysB family transcriptional regulator compare
AO356_07480 -2.6 -3.5 carbamoyl phosphate synthase large subunit compare
AO356_05160 -2.6 -7.0 glucose-6-phosphate dehydrogenase compare
AO356_06005 -2.5 -5.2 zinc metallopeptidase RseP compare
AO356_12500 -2.5 -9.5 ribonuclease PH compare
AO356_10300 -2.5 -3.2 3-phosphoglycerate dehydrogenase compare
AO356_12005 -2.4 -12.4 transcriptional regulator compare
AO356_20155 -2.4 -7.0 phosphate acyltransferase compare
AO356_21330 -2.4 -9.6 aromatic amino acid aminotransferase compare
AO356_16060 -2.4 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_02315 -2.4 -3.6 DNA topoisomerase I compare
AO356_14135 -2.3 -12.6 biotin synthase compare
AO356_01745 -2.3 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_05010 -2.2 -10.8 diguanylate cyclase compare
AO356_07910 -2.2 -2.1 exodeoxyribonuclease V subunit alpha compare
AO356_08890 -2.1 -7.3 glycosyltransferase compare
AO356_00560 -2.1 -2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_03800 -2.1 -2.3 histidine kinase compare
AO356_13595 -2.0 -9.5 amino acid ABC transporter substrate-binding protein compare
AO356_17830 -2.0 -5.7 pyruvate kinase compare
AO356_22795 -2.0 -4.8 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_05055 -2.0 -6.3 permease DsdX compare
AO356_08895 -2.0 -2.9 GlcNAc-PI de-N-acetylase compare
AO356_22980 -1.9 -2.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO356_05060 -1.9 -3.0 gluconokinase compare
AO356_18020 -1.9 -3.5 ATP-dependent DNA helicase RuvA compare
AO356_19285 -1.9 -2.0 tRNA-Asp compare
AO356_08975 -1.9 -11.8 diguanylate cyclase compare
AO356_10585 -1.9 -10.3 hypothetical protein compare
AO356_03095 -1.8 -6.8 protease HtpX compare
AO356_17020 -1.8 -5.4 cytochrome D ubiquinol oxidase subunit III compare
AO356_15465 -1.8 -6.3 AsnC family transcriptional regulator conserved
AO356_07915 -1.8 -2.9 exodeoxyribonuclease V subunit beta compare
AO356_18025 -1.7 -2.9 ATP-dependent DNA helicase RuvB compare
AO356_06960 -1.7 -6.6 histidinol-phosphate aminotransferase compare
AO356_11025 -1.7 -5.0 transcriptional regulator PhoU compare
AO356_10075 -1.7 -5.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_20345 -1.7 -10.1 GntR family transcriptional regulator conserved
AO356_10000 -1.7 -4.9 hypothetical protein compare
AO356_18730 -1.6 -8.2 arginine N-succinyltransferase compare
AO356_08235 -1.6 -7.3 histidine kinase compare
AO356_10005 -1.6 -7.4 branched-chain amino acid permease (azaleucine resistance) compare
AO356_00880 -1.6 -2.6 integration host factor subunit alpha compare
AO356_00555 -1.6 -8.3 sulfite reductase compare
AO356_16080 -1.5 -9.5 ATPase compare
AO356_05225 -1.5 -5.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_22995 -1.5 -3.4 ArsR family transcriptional regulator compare
AO356_03070 -1.5 -9.2 histidine kinase compare
AO356_00605 -1.5 -4.3 TetR family transcriptional regulator compare
AO356_03435 -1.4 -3.3 integration host factor subunit beta compare
AO356_02290 -1.4 -3.2 TetR family transcriptional regulator compare
AO356_12380 -1.4 -6.2 ATP-dependent DNA helicase RecG compare
AO356_06690 -1.4 -3.3 queuine tRNA-ribosyltransferase compare
AO356_01245 -1.4 -7.3 glycogen branching protein compare
AO356_26360 -1.4 -2.8 enoyl-CoA hydratase compare
AO356_03360 -1.3 -3.1 hypothetical protein compare
AO356_22985 -1.3 -6.9 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) conserved
AO356_26350 -1.3 -2.4 acetyl-CoA acetyltransferase compare
AO356_12725 -1.3 -4.2 recombinase XerC compare
AO356_07020 -1.3 -1.9 LPS export ABC transporter periplasmic protein LptC compare
AO356_22975 -1.2 -5.2 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) conserved
AO356_16760 -1.2 -4.5 hypothetical protein compare
AO356_25505 -1.2 -1.8 hypothetical protein compare
AO356_17035 -1.2 -4.5 ATPase compare
AO356_11030 -1.2 -8.1 phosphate ABC transporter ATP-binding protein compare
AO356_03405 -1.2 -3.5 serine acetyltransferase compare
AO356_12375 -1.2 -7.8 histidine kinase compare
AO356_26345 -1.2 -3.9 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
AO356_22200 -1.2 -5.2 sirohydrochlorin ferrochelatase compare
AO356_06385 -1.2 -2.5 recombinase XerD compare
AO356_14825 -1.2 -2.2 AraC family transcriptional regulator compare
AO356_11055 -1.2 -2.5 long-chain acyl-CoA thioester hydrolase compare
AO356_03380 -1.2 -3.5 glycosyl amidation-associated protein WbuZ compare
AO356_12495 -1.1 -4.1 hypothetical protein compare
AO356_12610 -1.1 -1.9 Fe-S oxidoreductase compare
AO356_17200 -1.1 -7.2 histidine kinase compare
AO356_12715 -1.1 -3.3 hypothetical protein compare
AO356_12605 -1.1 -6.3 FAD-dependent oxidoreductase compare
AO356_15815 -1.1 -1.6 gamma-glutamyl kinase compare
AO356_22990 -1.1 -5.4 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) compare
AO356_07845 -1.1 -6.6 MFS transporter compare
AO356_17505 -1.1 -3.8 DNA repair protein RecO compare
AO356_26315 -1.1 -4.8 AraC family transcriptional regulator compare
AO356_02250 -1.1 -5.2 pyridine nucleotide-disulfide oxidoreductase compare
AO356_07110 -1.1 -4.3 ribonuclease G compare
AO356_16435 -1.1 -1.9 hypothetical protein compare
AO356_01555 -1.1 -5.2 acyl-CoA dehydrogenase compare
AO356_22675 -1.0 -1.6 sulfate transporter compare
AO356_09185 -1.0 -1.3 hypothetical protein compare
AO356_28845 -1.0 -2.0 ferrichrome ABC transporter compare
AO356_12990 -1.0 -4.8 5-formyltetrahydrofolate cyclo-ligase compare
AO356_30345 -1.0 -4.0 IclR family transcriptional regulator compare
AO356_28110 -1.0 -5.1 ATPase compare
AO356_02580 -1.0 -3.3 GntR family transcriptional regulator compare
AO356_03415 -1.0 -5.0 oxidoreductase compare
AO356_27170 -0.9 -2.3 XRE family transcriptional regulator compare
AO356_11465 -0.9 -5.4 DNA polymerase I compare
AO356_05170 -0.9 -2.9 aldose epimerase compare
AO356_28315 -0.9 -3.1 hypothetical protein compare
AO356_17985 -0.9 -3.8 cold-shock protein compare
AO356_18000 -0.9 -1.2 FmdB family transcriptional regulator compare
AO356_04560 -0.9 -2.0 serine peptidase compare
AO356_20865 -0.9 -3.8 2-methylisocitrate lyase compare
AO356_14155 -0.9 -5.0 dethiobiotin synthetase compare
AO356_22710 -0.9 -1.4 ArsC family transcriptional regulator compare
AO356_06580 -0.9 -2.3 GTP-binding protein compare
AO356_14140 -0.9 -6.2 8-amino-7-oxononanoate synthase compare
AO356_12755 -0.9 -3.2 nucleoside diphosphate kinase regulator compare
AO356_12485 -0.9 -2.9 DNA-directed RNA polymerase subunit omega compare
AO356_17770 -0.9 -1.3 hypothetical protein compare
AO356_03385 -0.8 -2.7 imidazole glycerol phosphate synthase subunit HisH compare
AO356_22950 -0.8 -1.2 peptidylprolyl isomerase compare
AO356_04575 -0.8 -4.8 RNA polymerase subunit sigma compare
AO356_18805 -0.8 -1.2 magnesium transporter compare
AO356_25390 -0.8 -1.6 enamine deaminase RidA compare
AO356_10695 -0.8 -4.4 diguanylate cyclase compare
AO356_14150 -0.8 -4.3 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_24695 -0.8 -2.1 transcriptional regulator compare
AO356_11040 -0.8 -6.7 phosphate ABC transporter permease compare
AO356_04275 -0.8 -1.1 3-oxoacyl-ACP synthase compare
AO356_20475 -0.8 -1.2 hypothetical protein compare
AO356_05210 -0.8 -3.4 chemotaxis protein CheY compare
AO356_13570 -0.8 -4.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_25750 -0.8 -1.5 GntR family transcriptional regulator compare
AO356_15260 -0.8 -1.1 dehydratase compare
AO356_06705 -0.8 -2.6 hypothetical protein compare
AO356_13445 -0.8 -1.0 dihydroorotase compare
AO356_08525 -0.8 -4.2 NAD synthetase compare
AO356_27550 -0.8 -2.2 3-oxoacyl-ACP synthase compare
AO356_02640 -0.7 -1.6 type III secretion system protein PrgJ compare
AO356_18145 -0.7 -3.3 quinolinate synthase A compare
AO356_18330 -0.7 -4.3 hypothetical protein compare
AO356_28255 -0.7 -1.5 class III aminotransferase compare
AO356_17555 -0.7 -1.5 GntR family transcriptional regulator compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source L-Isoleucine in Pseudomonas fluorescens FW300-N2C3

For nitrogen source L-Isoleucine across organisms