Experiment set5IT084 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Anaerobic_180MIN_ZN16A

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -5.6 -8.5 outer membrane protein TolC compare
CSW01_02890 -4.6 -8.8 aspartate kinase compare
CSW01_11535 -3.2 -7.3 thiamine-phosphate kinase compare
CSW01_04650 -3.0 -2.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_01015 -3.0 -15.6 DNA helicase II compare
CSW01_02875 -2.6 -8.7 DNA recombination/repair protein RecA compare
CSW01_00650 -2.6 -9.7 tyrosine recombinase XerC compare
CSW01_01300 -2.6 -5.0 sugar ABC transporter compare
CSW01_09240 -2.6 -5.6 Holliday junction branch migration DNA helicase RuvB compare
CSW01_01295 -2.2 -2.1 ABC transporter permease compare
CSW01_09245 -2.1 -5.8 Holliday junction branch migration protein RuvA compare
CSW01_18350 -2.0 -1.3 cell division protein DedD compare
CSW01_12365 -2.0 -3.5 inorganic phosphate transporter compare
CSW01_14910 -2.0 -2.9 cold-shock protein compare
CSW01_12250 -1.9 -7.2 site-specific tyrosine recombinase XerD compare
CSW01_03795 -1.9 -1.7 phosphate ABC transporter ATP-binding protein compare
CSW01_05630 -1.8 -10.0 replication-associated recombination protein A compare
CSW01_02755 -1.7 -2.6 glutamyl-tRNA amidotransferase compare
CSW01_13805 -1.5 -4.0 Hsp33 family molecular chaperone HslO compare
CSW01_00560 -1.5 -2.1 DNA polymerase I compare
CSW01_05575 -1.5 -3.5 phosphate acetyltransferase compare
CSW01_10190 -1.3 -3.8 nucleoid-associated protein compare
CSW01_04375 -1.2 -2.6 SsrA-binding protein compare
CSW01_01265 -1.2 -2.7 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_11565 -1.2 -2.7 transcriptional regulator NrdR compare
CSW01_09250 -1.1 -0.7 crossover junction endodeoxyribonuclease RuvC compare
CSW01_05265 -1.1 -1.5 methionine--tRNA ligase compare
CSW01_01125 -1.0 -7.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_06030 -1.0 -1.9 helicase compare
CSW01_17780 -1.0 -2.2 hypothetical protein compare
CSW01_10710 -1.0 -6.9 deferrochelatase compare
CSW01_04910 -1.0 -3.2 PhoH family protein compare
CSW01_04845 -1.0 -3.8 D-alanyl-D-alanine carboxypeptidase compare
CSW01_03410 -1.0 -1.8 polyribonucleotide nucleotidyltransferase compare
CSW01_13285 -1.0 -2.3 ribulose-phosphate 3-epimerase compare
CSW01_00095 -1.0 -2.4 hypothetical protein compare
CSW01_03975 -0.9 -3.7 exodeoxyribonuclease VII large subunit compare
CSW01_11255 -0.9 -3.5 flagellar biosynthesis protein FlgP compare
CSW01_03075 -0.9 -2.9 phosphoheptose isomerase compare
CSW01_08620 -0.9 -6.5 chromosome partition protein MukB compare
CSW01_04850 -0.9 -4.6 septal ring lytic transglycosylase RlpA compare
CSW01_09525 -0.9 -0.7 DNA translocase FtsK compare
CSW01_13305 -0.9 -1.6 shikimate kinase compare
CSW01_03915 -0.9 -1.9 Fe-S assembly protein IscX compare
CSW01_15310 -0.8 -2.7 exoribonuclease R compare
CSW01_08450 -0.8 -1.5 antimicrobial peptide ABC transporter permease SapB compare
CSW01_11775 -0.8 -5.8 exodeoxyribonuclease V subunit alpha compare
CSW01_07160 -0.8 -3.2 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_00495 -0.8 -1.4 SOS-response transcriptional repressor compare
CSW01_11730 -0.8 -1.8 2-dehydropantoate 2-reductase compare
CSW01_10565 -0.8 -1.8 hypothetical protein compare
CSW01_01245 -0.8 -2.8 lipopolysaccharide heptosyltransferase II compare
CSW01_16310 -0.8 -1.4 DUF3709 domain-containing protein compare
CSW01_10875 -0.8 -2.4 redox-regulated ATPase YchF compare
CSW01_08630 -0.8 -3.6 condensin subunit F compare
CSW01_07005 -0.8 -1.3 hypothetical protein compare
CSW01_10255 -0.8 -0.8 cytochrome c-type biogenesis protein CcmH compare
CSW01_02490 -0.8 -4.1 glutathione synthetase compare
CSW01_15120 -0.8 -3.4 iron(III) ABC transporter permease compare
CSW01_17495 -0.8 -3.8 glycerol-3-phosphate dehydrogenase compare
CSW01_17090 -0.7 -3.6 SPOR domain-containing protein compare
CSW01_10545 -0.7 -2.5 hypothetical protein compare
CSW01_06015 -0.7 -3.9 NAD-dependent malic enzyme compare
CSW01_03790 -0.7 -2.1 phosphate ABC transporter, permease protein PstA compare
CSW01_15680 -0.7 -1.7 DUF3265 domain-containing protein compare
CSW01_03985 -0.7 -2.2 GMP synthase (glutamine-hydrolyzing) compare
CSW01_14130 -0.7 -1.2 hypothetical protein compare
CSW01_05165 -0.7 -1.1 electron transport complex subunit RsxC compare
CSW01_08665 -0.7 -1.3 DNA transformation protein compare
CSW01_19345 -0.7 -3.3 YccF domain-containing protein compare
CSW01_00450 -0.7 -1.3 SCP2 domain-containing protein compare
CSW01_09465 -0.7 -3.4 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_03980 -0.7 -4.0 IMP dehydrogenase compare
CSW01_09605 -0.7 -3.0 endopeptidase La compare
CSW01_12320 -0.7 -1.1 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_15870 -0.7 -1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_02970 -0.7 -3.5 glutamate--cysteine ligase compare
CSW01_14455 -0.7 -2.0 hypothetical protein compare
CSW01_08935 -0.6 -1.5 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_03155 -0.6 -3.8 RNA polymerase-binding transcription factor DksA compare
CSW01_03785 -0.6 -1.5 phosphate ABC transporter permease compare
CSW01_13300 -0.6 -3.1 3-dehydroquinate synthase compare
CSW01_08625 -0.6 -2.0 chromosome partition protein MukE compare
CSW01_05240 -0.6 -2.0 CBS domain-containing protein compare
CSW01_07770 -0.6 -2.3 MotA/TolQ/ExbB proton channel family protein compare
CSW01_11690 -0.6 -3.7 hypothetical protein compare
CSW01_04315 -0.6 -2.6 TCP pilus virulence regulatory protein compare
CSW01_13680 -0.6 -5.2 DNA helicase RecG compare
CSW01_10750 -0.6 -2.1 outer membrane protein assembly factor BamC compare
CSW01_09620 -0.6 -1.3 trigger factor compare
CSW01_05580 -0.6 -2.2 acetate kinase compare
CSW01_06585 -0.6 -1.5 fumarate hydratase compare
CSW01_14495 -0.6 -1.8 NUDIX hydrolase compare
CSW01_11780 -0.6 -0.7 exodeoxyribonuclease V subunit beta compare
CSW01_14125 -0.6 -3.0 1,4-alpha-glucan branching enzyme compare
CSW01_02380 -0.6 -1.7 tRNA-Asn compare
CSW01_12445 -0.6 -3.3 DNA repair protein RecO compare
CSW01_07150 -0.6 -1.0 spermidine/putrescine ABC transporter permease PotC compare
CSW01_15560 -0.6 -1.3 lipocalin compare
CSW01_04570 -0.6 -2.2 exodeoxyribonuclease 7 small subunit compare
CSW01_01195 -0.6 -0.8 ADP-heptose--LPS heptosyltransferase I compare
CSW01_12815 -0.6 -3.3 RNA polymerase sigma-54 factor compare
CSW01_07195 -0.6 -1.2 cytochrome biogenesis protein compare
CSW01_04285 -0.6 -1.3 toxin coregulated pilus biosynthesis protein R compare
CSW01_14680 -0.5 -1.0 aminotransferase compare
CSW01_16210 -0.5 -1.2 VOC family protein compare
CSW01_03950 -0.5 -1.2 hypothetical protein compare
CSW01_12680 -0.5 -3.4 cytosol aminopeptidase compare
CSW01_08240 -0.5 -1.3 ATP-binding protein compare
CSW01_16920 -0.5 -1.1 hypothetical protein compare
CSW01_03335 -0.5 -1.9 ribosome assembly RNA-binding protein YhbY compare
CSW01_04105 -0.5 -2.9 sodium pump decarboxylase compare
CSW01_17385 -0.5 -1.1 antibiotic biosynthesis monooxygenase compare
CSW01_05370 -0.5 -0.9 YbaB/EbfC family nucleoid-associated protein compare
CSW01_02450 -0.5 -3.3 pyrroline-5-carboxylate reductase compare
CSW01_05890 -0.5 -2.9 hypothetical protein compare
CSW01_05020 -0.5 -1.8 regulatory protein ToxS compare
CSW01_06970 -0.5 -1.0 DUF2256 domain-containing protein compare
CSW01_03325 -0.5 -1.0 porin compare
CSW01_03065 -0.5 -0.6 ClpXP protease specificity-enhancing factor compare
CSW01_03045 -0.5 -1.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_10560 -0.5 -1.7 chorismate synthase compare
CSW01_19415 -0.5 -1.4 hypothetical protein compare
CSW01_14815 -0.5 -1.5 hypothetical protein compare
CSW01_15425 -0.5 -0.6 DUF3265 domain-containing protein compare
CSW01_10380 -0.5 -1.4 iron transporter FeoC compare
CSW01_00015 -0.5 -0.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_04930 -0.5 -1.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_07215 -0.5 -1.1 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_07775 -0.5 -2.3 flagellar motor protein MotA compare
CSW01_01190 -0.5 -2.2 glycosyltransferase family 2 protein compare
CSW01_11325 -0.5 -2.0 DUF3149 domain-containing protein compare
CSW01_17855 -0.5 -3.5 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_17060 -0.5 -1.5 DUF2861 domain-containing protein compare
CSW01_03330 -0.5 -1.5 transcription elongation factor GreA compare
CSW01_16505 -0.5 -1.6 DUF645 domain-containing protein compare
CSW01_04935 -0.5 -0.4 phosphocarrier protein HPr compare
CSW01_16195 -0.5 -0.7 DUF645 domain-containing protein compare
CSW01_15460 -0.5 -1.6 type B-5 chloramphenicol O-acetyltransferase CatB9 compare
CSW01_05825 -0.4 -2.0 transcriptional regulator HexR compare
CSW01_16270 -0.4 -0.9 DUF3709 domain-containing protein compare
CSW01_05140 -0.4 -1.8 lactoylglutathione lyase compare
CSW01_13340 -0.4 -3.3 DNA-binding transcriptional regulator OxyR compare
CSW01_06530 -0.4 -2.7 aromatic amino acid aminotransferase compare
CSW01_11785 -0.4 -0.6 exonuclease V subunit gamma compare
CSW01_16590 -0.4 -0.8 N-acetyltransferase compare
CSW01_18630 -0.4 -2.3 6-phosphogluconolactonase compare
CSW01_11415 -0.4 -1.9 phenolic acid decarboxylase compare
CSW01_02265 -0.4 -2.0 arginine repressor compare
CSW01_10835 -0.4 -1.9 hypothetical protein compare
CSW01_03025 -0.4 -1.6 hypothetical protein compare
CSW01_03685 -0.4 -1.2 ribosomal subunit interface protein compare
CSW01_10570 -0.4 -2.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
CSW01_08435 -0.4 -1.9 phage shock protein PspA compare
CSW01_00850 -0.4 -3.7 multidrug resistance protein compare
CSW01_12465 -0.4 -1.6 elongation factor 4 compare
CSW01_09040 -0.4 -1.9 primosomal protein compare
CSW01_00955 -0.4 -3.2 hypothetical protein compare
CSW01_18310 -0.4 -0.8 hypothetical protein compare
CSW01_09420 -0.4 -0.9 DUF2062 domain-containing protein compare
CSW01_08345 -0.4 -1.2 hypothetical protein compare
CSW01_10290 -0.4 -1.5 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_07145 -0.4 -1.6 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_11755 -0.4 -2.5 murein transglycosylase compare
CSW01_05125 -0.4 -1.0 ribonuclease T compare
CSW01_09315 -0.4 -1.7 exodeoxyribonuclease III compare
CSW01_07730 -0.4 -1.0 CPXCG motif-containing cysteine-rich protein compare
CSW01_19525 -0.4 -2.2 chemoreceptor glutamine deamidase CheD compare
CSW01_00615 -0.4 -0.9 hypothetical protein compare
CSW01_01225 -0.4 -2.8 capsular biosynthesis protein compare
CSW01_08660 -0.4 -1.9 PurR family transcriptional regulator compare
CSW01_10400 -0.4 -1.6 zinc ABC transporter substrate-binding protein compare
CSW01_00855 -0.4 -2.9 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_08990 -0.4 -1.3 glyoxalase compare
CSW01_13620 -0.4 -3.1 aspartate ammonia-lyase compare
CSW01_10330 -0.4 -1.8 chemotaxis protein CheY compare
CSW01_09720 -0.4 -0.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_01185 -0.4 -2.2 ADP-heptose--LPS heptosyltransferase compare
CSW01_17370 -0.4 -1.5 hypothetical protein compare
CSW01_05195 -0.4 -1.5 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_16255 -0.4 -1.4 hypothetical protein compare
CSW01_16725 -0.4 -2.5 DUF3800 domain-containing protein compare
CSW01_01045 -0.4 -3.2 DNA helicase RecQ compare
CSW01_06565 -0.4 -2.3 L-serine ammonia-lyase compare
CSW01_10390 -0.4 -1.3 ferrous iron transport protein A compare
CSW01_18090 -0.4 -2.1 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
CSW01_06950 -0.4 -2.6 ATP-dependent RNA helicase HrpA compare
CSW01_05375 -0.4 -1.8 recombination protein RecR compare
CSW01_13410 -0.4 -1.5 protein-export protein SecB compare
CSW01_16785 -0.4 -0.9 hypothetical protein compare
CSW01_03475 -0.4 -1.1 ATP-dependent RNA helicase SrmB compare
CSW01_07820 -0.4 -1.8 RidA family protein compare
CSW01_17510 -0.4 -0.8 peptidylprolyl isomerase compare
CSW01_00065 -0.4 -2.4 DNA replication and repair protein RecF compare
CSW01_19095 -0.4 -1.6 DUF445 domain-containing protein compare
CSW01_05990 -0.4 -1.2 agglutination protein compare
CSW01_15000 -0.4 -1.0 rfbP protein compare
CSW01_14470 -0.4 -2.1 DUF134 domain-containing protein compare
CSW01_01240 -0.4 -2.3 lipopolysaccharide biosynthesis protein compare
CSW01_08465 -0.4 -0.7 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_anaerobic experiments

For lb_anaerobic LB across organisms