Experiment set5IT083 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5014 -4.1 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2219 -3.8 -2.6 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3460 -3.3 -2.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3842 -3.2 -4.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3661 -3.2 -3.1 hypothetical protein compare
Pf6N2E2_6140 -3.2 -1.6 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3461 -3.1 -3.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3658 -3.0 -6.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3666 -2.8 -3.9 InaA protein compare
Pf6N2E2_2508 -2.7 -4.0 hypothetical protein compare
Pf6N2E2_3839 -2.6 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3782 -2.6 -4.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2312 -2.6 -2.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_3252 -2.6 -7.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_178 -2.6 -1.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3659 -2.5 -5.6 Protein fixF compare
Pf6N2E2_4187 -2.5 -4.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3611 -2.4 -1.6 HflC protein compare
Pf6N2E2_2507 -2.4 -5.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5536 -2.3 -2.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2506 -2.3 -12.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2503 -2.2 -2.3 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5527 -2.1 -2.4 Cold shock protein CspC compare
Pf6N2E2_4025 -2.0 -1.9 hypothetical protein compare
Pf6N2E2_2320 -2.0 -2.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5727 -1.9 -4.7 FIG00955360: hypothetical protein compare
Pf6N2E2_2510 -1.9 -4.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4451 -1.9 -5.3 FIG139438: lipoprotein B compare
Pf6N2E2_3303 -1.9 -4.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3778 -1.9 -3.3 FIG00954300: hypothetical protein compare
Pf6N2E2_4369 -1.9 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3610 -1.8 -4.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3841 -1.8 -4.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3786 -1.7 -3.4 Twin-arginine translocation protein TatC compare
Pf6N2E2_2827 -1.7 -1.6 hypothetical protein compare
Pf6N2E2_1056 -1.7 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5671 -1.7 -3.1 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3373 -1.7 -2.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3264 -1.7 -2.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3251 -1.7 -6.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2313 -1.6 -3.4 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4889 -1.6 -5.3 Putative transport protein compare
Pf6N2E2_4638 -1.6 -2.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1656 -1.6 -2.4 hypothetical protein compare
Pf6N2E2_5430 -1.5 -6.4 Transglycosylase, Slt family compare
Pf6N2E2_5337 -1.5 -3.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3062 -1.5 -3.7 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5705 -1.4 -2.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2217 -1.4 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3908 -1.4 -4.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5406 -1.4 -2.3 FIG00958224: hypothetical protein compare
Pf6N2E2_5338 -1.4 -6.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3516 -1.4 -2.2 Probable transmembrane protein compare
Pf6N2E2_4803 -1.4 -1.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2127 -1.4 -3.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_441 -1.4 -2.8 FIG00958773: hypothetical protein compare
Pf6N2E2_1173 -1.4 -2.5 hypothetical protein compare
Pf6N2E2_2218 -1.4 -3.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1128 -1.4 -2.0 Two-component response regulator compare
Pf6N2E2_2479 -1.4 -2.0 Transcription elongation factor GreB compare
Pf6N2E2_2514 -1.4 -3.9 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3665 -1.4 -0.9 serine/threonine protein kinase compare
Pf6N2E2_3260 -1.4 -3.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3328 -1.4 -1.6 transcriptional regulator compare
Pf6N2E2_2428 -1.4 -2.6 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_5316 -1.4 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3095 -1.4 -1.1 hypothetical protein compare
Pf6N2E2_3612 -1.3 -2.1 HflK protein compare
Pf6N2E2_5069 -1.3 -3.2 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2513 -1.3 -3.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5068 -1.3 -6.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2402 -1.3 -2.0 hypothetical protein compare
Pf6N2E2_5339 -1.3 -4.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5150 -1.3 -4.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1797 -1.3 -2.4 Transcriptional regulator compare
Pf6N2E2_2473 -1.3 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_3791 -1.3 -5.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2126 -1.2 -3.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3783 -1.2 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2318 -1.2 -4.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5523 -1.2 -3.4 Small-conductance mechanosensitive channel compare
Pf6N2E2_855 -1.2 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_469 -1.2 -1.2 lipoprotein, putative compare
Pf6N2E2_5155 -1.2 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1450 -1.2 -1.6 FIG00960438: hypothetical protein compare
Pf6N2E2_309 -1.2 -1.1 FIG00957702: hypothetical protein compare
Pf6N2E2_5252 -1.2 -1.7 FIG00956396: hypothetical protein compare
Pf6N2E2_1347 -1.2 -2.6 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_2189 -1.2 -3.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3261 -1.2 -3.1 hypothetical protein compare
Pf6N2E2_3171 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_3255 -1.1 -3.0 YrbA protein compare
Pf6N2E2_4908 -1.1 -4.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2714 -1.1 -2.0 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_664 -1.1 -1.9 Acetoin catabolism protein X compare
Pf6N2E2_2274 -1.1 -3.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_623 -1.1 -1.3 FIG00954674: hypothetical protein compare
Pf6N2E2_4305 -1.1 -1.2 FIG00959590: hypothetical protein compare
Pf6N2E2_1743 -1.1 -1.7 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_4204 -1.1 -1.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3792 -1.1 -3.7 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2111 -1.1 -2.4 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_5476 -1.1 -2.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_4159 -1.1 -2.1 Cytochrome c4 compare
Pf6N2E2_5613 -1.1 -1.7 FIG00953674: hypothetical protein compare
Pf6N2E2_3198 -1.0 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1875 -1.0 -2.3 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_5840 -1.0 -3.1 hypothetical protein compare
Pf6N2E2_3656 -1.0 -3.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_384 -1.0 -2.0 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4558 -1.0 -3.1 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf6N2E2_3607 -1.0 -4.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3499 -1.0 -1.9 Permeases of the major facilitator superfamily compare
Pf6N2E2_3940 -1.0 -4.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2310 -1.0 -5.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5816 -1.0 -1.4 Smr domain protein compare
Pf6N2E2_1834 -1.0 -1.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1652 -1.0 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_5605 -1.0 -1.4 FxsA protein compare
Pf6N2E2_2080 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_2282 -0.9 -2.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5986 -0.9 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5869 -0.9 -2.1 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_2193 -0.9 -3.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_4700 -0.9 -2.4 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_2311 -0.9 -3.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4584 -0.9 -1.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_1501 -0.9 -2.0 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_71 -0.9 -3.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3537 -0.9 -2.5 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_2180 -0.9 -2.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5156 -0.9 -1.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3875 -0.9 -1.1 FIG00953324: hypothetical protein compare
Pf6N2E2_2753 -0.9 -1.5 HtrA protease/chaperone protein compare
Pf6N2E2_5746 -0.9 -1.6 Cobalamin synthase compare
Pf6N2E2_5219 -0.9 -4.0 FIG140336: TPR domain protein compare
Pf6N2E2_2869 -0.9 -1.1 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2106 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_4620 -0.9 -1.6 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf6N2E2_2574 -0.9 -1.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_1394 -0.9 -2.4 FIG00953323: hypothetical protein compare
Pf6N2E2_1089 -0.9 -1.2 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1034 -0.9 -1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5766 -0.9 -1.2 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_2314 -0.9 -1.3 VapB protein (antitoxin to VapC) compare
Pf6N2E2_2124 -0.9 -1.4 Mg(2+) transport ATPase protein C compare
Pf6N2E2_434 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_572 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_3655 -0.8 -4.9 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2309 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_4601 -0.8 -1.4 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_1705 -0.8 -1.0 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3019 -0.8 -3.1 FIG00954559: hypothetical protein compare
Pf6N2E2_612 -0.8 -2.5 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
Pf6N2E2_2756 -0.8 -3.4 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2795 -0.8 -1.5 putative exported protein compare
Pf6N2E2_4570 -0.8 -2.3 Cation/multidrug efflux pump compare
Pf6N2E2_4054 -0.8 -1.1 Osmotically inducible protein C compare
Pf6N2E2_1692 -0.8 -2.3 transporter, LysE family compare
Pf6N2E2_3192 -0.8 -2.4 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_2266 -0.8 -1.4 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_4918 -0.8 -1.9 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_460 -0.8 -1.8 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_4825 -0.8 -3.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2682 -0.8 -1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_3179 -0.8 -1.3 FIG021952: putative membrane protein compare
Pf6N2E2_70 -0.8 -2.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4276 -0.8 -2.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1548 -0.8 -2.2 Lactoylglutathione lyase compare
Pf6N2E2_593 -0.8 -2.8 FIG00958166: hypothetical protein compare
Pf6N2E2_2973 -0.8 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4678 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_2755 -0.8 -0.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2488 -0.8 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3204 -0.8 -1.0 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_2317 -0.8 -2.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5761 -0.8 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_4416 -0.8 -1.3 Tyrosine recombinase XerC compare
Pf6N2E2_5748 -0.8 -2.0 Transcriptional activator protein LuxR compare
Pf6N2E2_2527 -0.8 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3521 -0.8 -3.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_3533 -0.8 -2.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_33 -0.8 -1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_502 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_1495 -0.8 -2.5 Glutamate transport membrane-spanning protein compare
Pf6N2E2_3282 -0.8 -1.4 FIG005080: Possible exported protein compare
Pf6N2E2_288 -0.8 -1.3 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2340 -0.8 -2.3 Transcriptional regulator, GntR family compare
Pf6N2E2_1860 -0.8 -1.4 Ferredoxin, 2Fe-2S compare
Pf6N2E2_2501 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_4987 -0.8 -0.7 MaoC-like domain protein compare
Pf6N2E2_1444 -0.8 -1.9 Transcriptional regulator, LysR family compare
Pf6N2E2_48 -0.8 -2.0 FIG00955661: hypothetical protein compare
Pf6N2E2_2552 -0.8 -3.1 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2261 -0.8 -3.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_1783 -0.8 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3240 -0.8 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_5820 -0.8 -1.7 FIG00957914: hypothetical protein compare
Pf6N2E2_5088 -0.7 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1673 -0.7 -1.0 Transcriptional regulator, TetR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments