Experiment set5IT083 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_aerobic_180MIN_ZN15B

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -5.4 -9.0 outer membrane protein TolC compare
CSW01_02890 -4.0 -10.2 aspartate kinase compare
CSW01_11535 -3.6 -5.9 thiamine-phosphate kinase compare
CSW01_01015 -3.2 -15.6 DNA helicase II compare
CSW01_01300 -3.2 -4.3 sugar ABC transporter compare
CSW01_02875 -3.0 -7.7 DNA recombination/repair protein RecA compare
CSW01_01295 -2.5 -1.7 ABC transporter permease compare
CSW01_05575 -2.2 -3.7 phosphate acetyltransferase compare
CSW01_00450 -1.9 -2.8 SCP2 domain-containing protein compare
CSW01_09245 -1.9 -5.0 Holliday junction branch migration protein RuvA compare
CSW01_12250 -1.9 -6.6 site-specific tyrosine recombinase XerD compare
CSW01_00650 -1.7 -8.0 tyrosine recombinase XerC compare
CSW01_13805 -1.7 -3.8 Hsp33 family molecular chaperone HslO compare
CSW01_09240 -1.6 -4.0 Holliday junction branch migration DNA helicase RuvB compare
CSW01_00560 -1.6 -2.4 DNA polymerase I compare
CSW01_10190 -1.5 -5.2 nucleoid-associated protein compare
CSW01_03325 -1.5 -2.0 porin compare
CSW01_13305 -1.5 -2.3 shikimate kinase compare
CSW01_05630 -1.4 -8.6 replication-associated recombination protein A compare
CSW01_04650 -1.4 -2.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_11670 -1.3 -1.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_12365 -1.3 -2.8 inorganic phosphate transporter compare
CSW01_18350 -1.3 -1.1 cell division protein DedD compare
CSW01_04375 -1.2 -2.6 SsrA-binding protein compare
CSW01_13285 -1.2 -2.4 ribulose-phosphate 3-epimerase compare
CSW01_03790 -1.2 -2.9 phosphate ABC transporter, permease protein PstA compare
CSW01_10710 -1.1 -8.0 deferrochelatase compare
CSW01_01245 -1.1 -3.7 lipopolysaccharide heptosyltransferase II compare
CSW01_09525 -1.1 -0.7 DNA translocase FtsK compare
CSW01_08625 -1.0 -4.3 chromosome partition protein MukE compare
CSW01_01125 -1.0 -6.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_03975 -1.0 -4.2 exodeoxyribonuclease VII large subunit compare
CSW01_08240 -1.0 -2.1 ATP-binding protein compare
CSW01_08935 -1.0 -1.8 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_04845 -0.9 -3.9 D-alanyl-D-alanine carboxypeptidase compare
CSW01_06015 -0.9 -4.9 NAD-dependent malic enzyme compare
CSW01_07150 -0.9 -2.2 spermidine/putrescine ABC transporter permease PotC compare
CSW01_04850 -0.9 -3.4 septal ring lytic transglycosylase RlpA compare
CSW01_03985 -0.9 -2.7 GMP synthase (glutamine-hydrolyzing) compare
CSW01_03795 -0.9 -1.0 phosphate ABC transporter ATP-binding protein compare
CSW01_07155 -0.9 -2.7 spermidine/putrescine ABC transporter permease PotB compare
CSW01_17495 -0.9 -4.9 glycerol-3-phosphate dehydrogenase compare
CSW01_13300 -0.9 -4.3 3-dehydroquinate synthase compare
CSW01_14125 -0.8 -3.8 1,4-alpha-glucan branching enzyme compare
CSW01_06325 -0.8 -0.9 hypothetical protein compare
CSW01_03065 -0.8 -1.9 ClpXP protease specificity-enhancing factor compare
CSW01_14495 -0.8 -2.4 NUDIX hydrolase compare
CSW01_16435 -0.8 -1.5 DUF3265 domain-containing protein compare
CSW01_08450 -0.8 -1.6 antimicrobial peptide ABC transporter permease SapB compare
CSW01_17780 -0.8 -1.9 hypothetical protein compare
CSW01_09620 -0.8 -1.2 trigger factor compare
CSW01_17595 -0.8 -1.1 TIGR02808 family protein compare
CSW01_08620 -0.8 -5.4 chromosome partition protein MukB compare
CSW01_10195 -0.8 -2.4 hypothetical protein compare
CSW01_09485 -0.8 -2.4 DUF1425 domain-containing protein compare
CSW01_15120 -0.8 -2.1 iron(III) ABC transporter permease compare
CSW01_16590 -0.8 -1.3 N-acetyltransferase compare
CSW01_04930 -0.7 -2.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_08465 -0.7 -1.2 ABC transporter ATP-binding protein compare
CSW01_11800 -0.7 -1.8 hydroxyacid dehydrogenase compare
CSW01_09605 -0.7 -2.9 endopeptidase La compare
CSW01_11730 -0.7 -1.5 2-dehydropantoate 2-reductase compare
CSW01_10245 -0.7 -1.5 ABC transporter compare
CSW01_15810 -0.7 -2.1 hypothetical protein compare
CSW01_02970 -0.7 -3.7 glutamate--cysteine ligase compare
CSW01_12680 -0.7 -4.1 cytosol aminopeptidase compare
CSW01_05800 -0.7 -2.0 ATP-dependent Clp protease adaptor ClpS compare
CSW01_05890 -0.7 -2.8 hypothetical protein compare
CSW01_08630 -0.7 -3.2 condensin subunit F compare
CSW01_04910 -0.7 -1.4 PhoH family protein compare
CSW01_14965 -0.6 -2.4 hypothetical protein compare
CSW01_12255 -0.6 -1.9 flavodoxin FldB compare
CSW01_02490 -0.6 -3.2 glutathione synthetase compare
CSW01_15125 -0.6 -2.9 iron(III) ABC transporter ATP-binding protein compare
CSW01_18315 -0.6 -2.1 methyltransferase compare
CSW01_10565 -0.6 -1.8 hypothetical protein compare
CSW01_11690 -0.6 -3.8 hypothetical protein compare
CSW01_10260 -0.6 -1.9 thiol:disulfide interchange protein DsbE compare
CSW01_01800 -0.6 -0.7 tRNA-Met compare
CSW01_07720 -0.6 -1.1 DUF3802 domain-containing protein compare
CSW01_13410 -0.6 -2.7 protein-export protein SecB compare
CSW01_15430 -0.6 -1.9 hypothetical protein compare
CSW01_08705 -0.6 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_11255 -0.6 -2.3 flagellar biosynthesis protein FlgP compare
CSW01_07230 -0.6 -3.1 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_17855 -0.6 -4.3 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_18495 -0.6 -1.3 cytochrome bd-I oxidase subunit CydX compare
CSW01_08350 -0.6 -3.0 DUF1289 domain-containing protein compare
CSW01_05265 -0.6 -0.7 methionine--tRNA ligase compare
CSW01_14130 -0.6 -1.0 hypothetical protein compare
CSW01_03980 -0.6 -3.5 IMP dehydrogenase compare
CSW01_14470 -0.6 -2.9 DUF134 domain-containing protein compare
CSW01_05580 -0.6 -2.9 acetate kinase compare
CSW01_17385 -0.6 -1.1 antibiotic biosynthesis monooxygenase compare
CSW01_10545 -0.6 -2.4 hypothetical protein compare
CSW01_01190 -0.6 -2.8 glycosyltransferase family 2 protein compare
CSW01_05020 -0.5 -1.6 regulatory protein ToxS compare
CSW01_11785 -0.5 -0.7 exonuclease V subunit gamma compare
CSW01_14055 -0.5 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_11085 -0.5 -1.9 hypothetical protein compare
CSW01_15860 -0.5 -1.4 DUF645 domain-containing protein compare
CSW01_11775 -0.5 -3.9 exodeoxyribonuclease V subunit alpha compare
CSW01_01860 -0.5 -1.8 SlyX protein compare
CSW01_11700 -0.5 -1.5 hypothetical protein compare
CSW01_09970 -0.5 -2.1 peptide-methionine (R)-S-oxide reductase compare
CSW01_15870 -0.5 -1.2 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_18045 -0.5 -2.5 UDP-glucose 4-epimerase GalE compare
CSW01_16195 -0.5 -0.9 DUF645 domain-containing protein compare
CSW01_13670 -0.5 -1.5 DNA-directed RNA polymerase subunit omega compare
CSW01_11915 -0.5 -1.7 hypothetical protein compare
CSW01_18635 -0.5 -2.0 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_09465 -0.5 -2.2 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_10485 -0.5 -0.8 DUF2788 domain-containing protein compare
CSW01_10390 -0.5 -1.8 ferrous iron transport protein A compare
CSW01_11410 -0.5 -0.9 nitrogen regulatory protein P-II compare
CSW01_17665 -0.5 -1.5 hypothetical protein compare
CSW01_00495 -0.5 -0.9 SOS-response transcriptional repressor compare
CSW01_14100 -0.5 -2.0 hypothetical protein compare
CSW01_02450 -0.5 -3.0 pyrroline-5-carboxylate reductase compare
CSW01_04105 -0.5 -2.3 sodium pump decarboxylase compare
CSW01_17370 -0.5 -2.0 hypothetical protein compare
CSW01_13680 -0.5 -4.1 DNA helicase RecG compare
CSW01_05370 -0.5 -0.6 YbaB/EbfC family nucleoid-associated protein compare
CSW01_16785 -0.5 -1.5 hypothetical protein compare
CSW01_19275 -0.5 -2.2 amino acid ABC transporter ATP-binding protein compare
CSW01_08590 -0.5 -2.7 hypothetical protein compare
CSW01_10560 -0.5 -1.8 chorismate synthase compare
CSW01_03475 -0.5 -1.9 ATP-dependent RNA helicase SrmB compare
CSW01_14780 -0.5 -1.7 cation:proton antiporter compare
CSW01_11710 -0.5 -2.8 transcriptional regulator compare
CSW01_14680 -0.5 -0.9 aminotransferase compare
CSW01_12130 -0.5 -1.6 DUF721 domain-containing protein compare
CSW01_17090 -0.5 -2.9 SPOR domain-containing protein compare
CSW01_09110 -0.5 -1.2 DNA-binding protein VF530 compare
CSW01_02440 -0.5 -1.9 YggU family protein compare
CSW01_01195 -0.5 -0.7 ADP-heptose--LPS heptosyltransferase I compare
CSW01_03410 -0.5 -0.8 polyribonucleotide nucleotidyltransferase compare
CSW01_03695 -0.5 -1.9 ribosomal large subunit pseudouridine synthase D compare
CSW01_12815 -0.5 -2.4 RNA polymerase sigma-54 factor compare
CSW01_07160 -0.5 -1.6 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_00850 -0.5 -4.0 multidrug resistance protein compare
CSW01_05375 -0.4 -2.1 recombination protein RecR compare
CSW01_07770 -0.4 -1.7 MotA/TolQ/ExbB proton channel family protein compare
CSW01_04320 -0.4 -2.9 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_11755 -0.4 -2.7 murein transglycosylase compare
CSW01_07460 -0.4 -0.8 ribosome modulation factor compare
CSW01_15115 -0.4 -2.6 iron(III) ABC transporter permease compare
CSW01_12445 -0.4 -2.3 DNA repair protein RecO compare
CSW01_01490 -0.4 -0.9 Fis family transcriptional regulator compare
CSW01_13620 -0.4 -3.4 aspartate ammonia-lyase compare
CSW01_06825 -0.4 -1.1 acylphosphatase compare
CSW01_07125 -0.4 -2.5 sodium:alanine symporter family protein compare
CSW01_07760 -0.4 -2.2 energy transducer TonB compare
CSW01_08345 -0.4 -1.1 hypothetical protein compare
CSW01_13340 -0.4 -3.0 DNA-binding transcriptional regulator OxyR compare
CSW01_05990 -0.4 -1.6 agglutination protein compare
CSW01_04260 -0.4 -1.6 pilus assembly protein compare
CSW01_04940 -0.4 -0.6 hypothetical protein compare
CSW01_01140 -0.4 -1.4 lipid A biosynthesis lauroyl acyltransferase compare
CSW01_10445 -0.4 -1.2 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_16505 -0.4 -2.1 DUF645 domain-containing protein compare
CSW01_08520 -0.4 -0.9 hypothetical protein compare
CSW01_01425 -0.4 -0.6 phosphoribosylamine--glycine ligase compare
CSW01_09315 -0.4 -1.4 exodeoxyribonuclease III compare
CSW01_19415 -0.4 -1.2 hypothetical protein compare
CSW01_02315 -0.4 -2.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_11290 -0.4 -2.4 hypothetical protein compare
CSW01_16325 -0.4 -0.8 hypothetical protein compare
CSW01_12005 -0.4 -0.8 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_06030 -0.4 -0.9 helicase compare
CSW01_14235 -0.4 -1.7 copper chaperone PCu(A)C compare
CSW01_08800 -0.4 -2.5 paraquat-inducible protein B compare
CSW01_05320 -0.4 -1.5 hypothetical protein compare
CSW01_07755 -0.4 -1.3 hypothetical protein compare
CSW01_00280 -0.4 -2.6 shikimate dehydrogenase compare
CSW01_00465 -0.4 -1.3 twin-arginine translocase subunit TatB compare
CSW01_03155 -0.4 -2.5 RNA polymerase-binding transcription factor DksA compare
CSW01_13565 -0.4 -1.9 cell division protein ZapB compare
CSW01_13485 -0.4 -2.3 5-carboxymethyl-2-hydroxymuconate isomerase compare
CSW01_01225 -0.4 -2.1 capsular biosynthesis protein compare
CSW01_00065 -0.4 -2.6 DNA replication and repair protein RecF compare
CSW01_18820 -0.4 -2.5 EamA/RhaT family transporter compare
CSW01_18420 -0.4 -1.5 hypothetical protein compare
CSW01_10420 -0.4 -2.0 succinyl-CoA ligase subunit beta compare
CSW01_05195 -0.4 -1.7 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_05480 -0.4 -0.9 hypothetical protein compare
CSW01_07870 -0.4 -1.0 ABC transporter ATP-binding protein compare
CSW01_07130 -0.4 -0.8 hypothetical protein compare
CSW01_11930 -0.4 -2.2 peroxide stress protein YaaA compare
CSW01_18630 -0.4 -1.7 6-phosphogluconolactonase compare
CSW01_10740 -0.4 -0.8 peptidase M15 compare
CSW01_17075 -0.4 -1.7 stress response translation initiation inhibitor YciH compare
CSW01_14420 -0.4 -1.8 peptidase M23 compare
CSW01_01045 -0.4 -3.1 DNA helicase RecQ compare
CSW01_11565 -0.4 -1.0 transcriptional regulator NrdR compare
CSW01_06415 -0.4 -0.7 MBL fold metallo-hydrolase compare
CSW01_08550 -0.4 -1.9 hypothetical protein compare
CSW01_04390 -0.4 -0.9 outer membrane protein assembly factor BamE compare
CSW01_08445 -0.4 -1.8 ABC transporter substrate-binding protein compare
CSW01_00855 -0.4 -2.8 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_aerobic experiments

For lb_0.5%bileacids_aerobic LB_0.5%bileacids across organisms