Experiment set5IT083 for Shewanella loihica PV-4

Motility M3

Group: motility
Media: LB + Agar (3 g/L)
Culturing: PV4_ML1, Agar plate, Aerobic, at 30 (C), shaken=0 rpm
By: Kelly on 8/28/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 18 genes in this experiment

For motility Agar in Shewanella loihica PV-4

For motility Agar across organisms

SEED Subsystems

Subsystem	#Specific
Bacterial Chemotaxis	4
Mannose-sensitive hemagglutinin type 4 pilus	2
Bacterial hemoglobins	1
Butanol Biosynthesis	1
Fermentations: Mixed acid	1
Flagellar motility	1
Glycine and Serine Utilization	1
Protein chaperones	1
Proteolysis in bacteria, ATP-dependent	1
Pyruvate Alanine Serine Interconversions	1
Threonine anaerobic catabolism gene cluster	1
Twin-arginine translocation system	1
YcfH	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pyruvate metabolism
• Propanoate metabolism
• Butanoate metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
reductive monocarboxylic acid cycle	2	1	1
pyruvate fermentation to ethanol I	3	3	1
pyruvate fermentation to acetate IV	3	3	1
L-threonine degradation I	6	6	1
superpathway of fermentation (Chlamydomonas reinhardtii)	9	7	1
(S)-lactate fermentation to propanoate, acetate and hydrogen	13	7	1
mixed acid fermentation	16	15	1
superpathway of L-threonine metabolism	18	15	1
hexitol fermentation to lactate, formate, ethanol and acetate	19	14	1
superpathway of N-acetylneuraminate degradation	22	16	1