Experiment set5IT083 for Sphingomonas koreensis DSMZ 15582

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
Ga0059261_4186 -4.2 -1.7 Phosphopantetheine attachment site compare
Ga0059261_3615 -4.0 -0.9 hypothetical protein compare
Ga0059261_2285 -4.0 -1.6 Fe2+ transport system protein A compare
Ga0059261_3356 -3.9 -0.9 hypothetical protein compare
Ga0059261_1560 -3.9 -2.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_3271 -3.8 -0.9 arsenate reductase (glutaredoxin) compare
Ga0059261_3620 -3.8 -2.3 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_4187 -3.6 -6.1 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_3971 -3.3 -1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_2189 -3.3 -6.3 uncharacterized domain 1 compare
Ga0059261_1316 -3.3 -1.1 hypothetical protein compare
Ga0059261_4188 -3.3 -3.2 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_2707 -3.1 -3.0 fructose-1,6-bisphosphatase, class II compare
Ga0059261_3882 -3.1 -2.7 dimethyladenosine transferase (EC 2.1.1.-) compare
Ga0059261_2294 -3.1 -1.2 Cell division protein compare
Ga0059261_1507 -2.9 -2.0 deoxycytidine triphosphate deaminase compare
Ga0059261_0171 -2.9 -1.3 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_1774 -2.9 -1.3 hypothetical protein compare
Ga0059261_1762 -2.8 -0.9 hypothetical protein compare
Ga0059261_1612 -2.7 -1.0 hypothetical protein compare
Ga0059261_3210 -2.7 -1.8 Organic radical activating enzymes compare
Ga0059261_0349 -2.7 -1.9 MarR family compare
Ga0059261_0170 -2.7 -3.1 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_0163 -2.7 -1.8 Major Facilitator Superfamily compare
Ga0059261_0650 -2.7 -1.3 Negative regulator of beta-lactamase expression compare
Ga0059261_1564 -2.6 -2.5 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_0172 -2.6 -4.0 Cytochrome c biogenesis factor compare
Ga0059261_2190 -2.6 -3.6 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_1563 -2.5 -1.9 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_0204 -2.5 -3.0 protein RecA compare
Ga0059261_2929 -2.5 -1.5 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_1312 -2.4 -3.3 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_2191 -2.4 -8.4 ribosomal subunit interface protein compare
Ga0059261_0664 -2.4 -1.4 pseudouridine synthase, RluA family compare
Ga0059261_1985 -2.4 -2.3 transcriptional regulator NrdR compare
Ga0059261_0321 -2.4 -1.5 hypothetical protein compare
Ga0059261_2913 -2.3 -1.6 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_1601 -2.3 -1.9 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_1339 -2.3 -1.3 hypothetical protein compare
Ga0059261_1909 -2.3 -5.8 MAF protein compare
Ga0059261_2145 -2.3 -4.6 ribosome-binding factor A compare
Ga0059261_1928 -2.3 -4.0 Predicted permeases compare
Ga0059261_2194 -2.3 -3.7 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
Ga0059261_2774 -2.3 -1.6 Transcription elongation factor compare
Ga0059261_0069 -2.2 -3.7 tRNA dimethylallyltransferase compare
Ga0059261_3671 -2.2 -2.4 Citrate lyase beta subunit compare
Ga0059261_3947 -2.2 -1.4 type II secretion system protein I (GspI) compare
Ga0059261_3251 -2.2 -2.7 Transcriptional regulator compare
Ga0059261_0369 -2.2 -1.5 ribosomal protein L9 compare
Ga0059261_0290 -2.2 -4.1 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_0623 -2.2 -3.1 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_0227 -2.1 -1.9 hypothetical protein compare
Ga0059261_1565 -2.1 -10.5 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_2179 -2.1 -5.6 Phospholipid N-methyltransferase compare
Ga0059261_1929 -2.1 -3.7 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_1911 -2.1 -1.0 Thioredoxin-like proteins and domains compare
Ga0059261_0931 -2.0 -1.6 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_0175 -2.0 -5.3 heme exporter protein CcmC compare
Ga0059261_0239 -2.0 -1.1 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_3227 -2.0 -1.5 GTP-binding protein YchF compare
Ga0059261_1382 -2.0 -6.1 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_2490 -2.0 -5.3 Small protein A (tmRNA-binding) compare
Ga0059261_3103 -2.0 -4.1 Glycosyltransferase compare
Ga0059261_1739 -2.0 -2.5 Conjugal transfer protein TraD compare
Ga0059261_3488 -2.0 -1.3 Histidine kinase/HAMP domain compare
Ga0059261_2444 -2.0 -4.1 5-aminolevulinic acid synthase compare
Ga0059261_3345 -2.0 -1.3 TlyA family rRNA methyltransferase/putative hemolysin compare
Ga0059261_3289 -1.9 -1.5 Predicted membrane protein compare
Ga0059261_3885 -1.9 -1.8 K+-transporting ATPase, C subunit compare
Ga0059261_1419 -1.9 -3.1 fructose-6-phosphate aldolase, TalC/MipB family compare
Ga0059261_0159 -1.8 -5.2 Transcriptional regulator compare
Ga0059261_3786 -1.8 -5.8 Malic enzyme compare
Ga0059261_3595 -1.8 -3.6 Site-specific recombinase XerD compare
Ga0059261_0622 -1.8 -5.3 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Ga0059261_1566 -1.8 -6.4 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_0627 -1.8 -0.8 cobalamin-5'-phosphate synthase (EC 2.7.8.26) compare
Ga0059261_2005 -1.8 -3.3 protoheme IX farnesyltransferase compare
Ga0059261_0197 -1.8 -0.8 hypothetical protein compare
Ga0059261_1846 -1.8 -6.7 Xaa-Pro aminopeptidase compare
Ga0059261_1538 -1.8 -3.5 Predicted transcriptional regulators compare
Ga0059261_0811 -1.7 -1.9 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_4204 -1.7 -3.0 transcriptional regulator, TetR family compare
Ga0059261_3748 -1.7 -2.0 ribosomal protein L15, bacterial/organelle compare
Ga0059261_3114 -1.7 -5.8 hypothetical protein compare
Ga0059261_3160 -1.7 -3.0 TolQ protein compare
Ga0059261_2928 -1.7 -4.5 oxygen-dependent methionine synthase, putative oxygenase component MesX (from data) compare
Ga0059261_3979 -1.7 -2.5 elongation factor 4 compare
Ga0059261_3101 -1.7 -2.3 nucleotide sugar dehydrogenase compare
Ga0059261_0248 -1.7 -2.7 hypothetical protein compare
Ga0059261_3308 -1.7 -2.4 Uncharacterized conserved protein compare
Ga0059261_1478 -1.7 -1.9 Predicted dioxygenase of extradiol dioxygenase family compare
Ga0059261_1872 -1.6 -3.8 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
Ga0059261_0089 -1.6 -3.9 trigger factor compare
Ga0059261_1287 -1.6 -6.6 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_1318 -1.6 -2.2 Uncharacterized MobA-related protein compare
Ga0059261_0464 -1.6 -1.0 hypothetical protein compare
Ga0059261_1914 -1.6 -1.9 Acetyltransferases compare
Ga0059261_0726 -1.6 -1.4 hypothetical protein compare
Ga0059261_0964 -1.6 -3.0 Superfamily II DNA and RNA helicases compare
Ga0059261_3442 -1.6 -2.1 HTH domain compare
Ga0059261_2418 -1.6 -3.7 lycopene cyclase compare
Ga0059261_0390 -1.6 -0.9 Ribbon-helix-helix protein, copG family compare
Ga0059261_1396 -1.6 -1.9 EF-hand domain pair compare
Ga0059261_0354 -1.6 -2.5 6-phosphogluconate dehydratase (EC 4.2.1.12) compare
Ga0059261_1451 -1.6 -3.2 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_2243 -1.5 -1.8 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_1791 -1.5 -1.0 hypothetical protein compare
Ga0059261_3022 -1.5 -2.3 MerT mercuric transport protein compare
Ga0059261_2015 -1.5 -2.5 maleylacetoacetate isomerase compare
Ga0059261_0267 -1.5 -1.0 Predicted membrane protein compare
Ga0059261_2086 -1.5 -0.8 SAF-like compare
Ga0059261_2286 -1.5 -4.5 Fe2+ transport system protein B compare
Ga0059261_1562 -1.5 -3.5 Uncharacterized conserved protein compare
Ga0059261_2892 -1.5 -2.0 hypothetical protein compare
Ga0059261_0344 -1.5 -2.0 Molecular chaperone (small heat shock protein) compare
Ga0059261_1860 -1.5 -0.8 Transposase compare
Ga0059261_2424 -1.5 -9.3 hydroxymethylpyrimidine synthase compare
Ga0059261_0893 -1.5 -2.9 inosine-5'-monophosphate dehydrogenase compare
Ga0059261_2215 -1.5 -1.2 Thiamine monophosphate synthase compare
Ga0059261_1145 -1.4 -0.8 flagella basal body P-ring formation protein FlgA compare
Ga0059261_1310 -1.4 -2.5 Predicted transcriptional regulators compare
Ga0059261_1869 -1.4 -3.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_0725 -1.4 -1.8 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_0816 -1.4 -1.7 hypothetical protein compare
Ga0059261_3121 -1.4 -4.5 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_1868 -1.4 -1.1 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_3130 -1.4 -5.1 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_0131 -1.4 -2.9 hypothetical protein compare
Ga0059261_4060 -1.4 -1.5 Predicted membrane protein compare
Ga0059261_3125 -1.4 -1.3 Imidazoleglycerol-phosphate synthase compare
Ga0059261_2700 -1.4 -7.3 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_1862 -1.4 -1.8 Transposase compare
Ga0059261_1561 -1.4 -3.4 Signal transduction histidine kinase compare
Ga0059261_2244 -1.4 -6.8 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_2458 -1.4 -5.2 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_1596 -1.4 -1.4 CBS domain compare
Ga0059261_1120 -1.3 -3.4 Chemotaxis protein histidine kinase and related kinases compare
Ga0059261_3097 -1.3 -2.9 Calcineurin-like phosphoesterase compare
Ga0059261_3569 -1.3 -1.5 chaperone protein DnaJ compare
Ga0059261_1075 -1.3 -0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_1092 -1.3 -1.1 flagellar motor switch protein FliN compare
Ga0059261_0613 -1.3 -2.1 FecR family protein compare
Ga0059261_3502 -1.3 -1.9 Fatty acid desaturase compare
Ga0059261_0121 -1.3 -1.3 Sporulation related domain compare
Ga0059261_3127 -1.3 -3.5 hypothetical protein compare
Ga0059261_4055 -1.3 -5.9 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) compare
Ga0059261_3772 -1.3 -2.9 NIPSNAP compare
Ga0059261_1386 -1.3 -3.6 7-cyano-7-deazaguanine reductase compare
Ga0059261_2825 -1.3 -3.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_4056 -1.3 -6.0 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Ga0059261_3519 -1.3 -8.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Ga0059261_0245 -1.2 -0.9 pseudouridine synthase compare
Ga0059261_3808 -1.2 -1.1 Pyrroline-5-carboxylate reductase compare
Ga0059261_3367 -1.2 -1.9 hypothetical protein compare
Ga0059261_2713 -1.2 -1.0 hypothetical protein compare
Ga0059261_1984 -1.2 -4.1 rRNA methylase compare
Ga0059261_2508 -1.2 -1.9 hypothetical protein compare
Ga0059261_2442 -1.2 -2.7 Predicted membrane protein compare
Ga0059261_1077 -1.2 -3.0 STAS domain compare
Ga0059261_0790 -1.2 -1.3 putative membrane protein insertion efficiency factor compare
Ga0059261_0907 -1.2 -3.0 Predicted transcriptional regulators compare
Ga0059261_3026 -1.2 -1.0 Cation efflux family compare
Ga0059261_2365 -1.2 -1.4 Mu-like prophage FluMu protein gp41 compare
Ga0059261_2579 -1.2 -4.9 Plasmid replication initiator protein compare
Ga0059261_0304 -1.2 -0.9 Bacterioferritin-associated ferredoxin compare
Ga0059261_2368 -1.2 -1.9 Phage baseplate assembly protein W compare
Ga0059261_1696 -1.2 -3.0 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_1335 -1.2 -2.4 Predicted ATPase compare
Ga0059261_3011 -1.2 -2.2 arsenate reductase (glutaredoxin) compare
Ga0059261_3965 -1.2 -4.6 formimidoylglutamate deiminase (EC 3.5.3.13) compare
Ga0059261_0827 -1.2 -1.2 hypothetical protein compare
Ga0059261_3430 -1.2 -1.4 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_0911 -1.2 -2.1 Domain of unknown function (DUF3597) compare
Ga0059261_0441 -1.2 -3.4 DNA-binding HTH domain-containing proteins compare
Ga0059261_1957 -1.2 -1.6 hypothetical protein compare
Ga0059261_0266 -1.1 -0.7 hypothetical protein compare
Ga0059261_3451 -1.1 -0.8 hypothetical protein compare
Ga0059261_1403 -1.1 -3.8 Predicted permeases compare
Ga0059261_0037 -1.1 -4.9 hypothetical protein compare
Ga0059261_1803 -1.1 -3.7 Domain of unknown function (DUF4136) compare
Ga0059261_2481 -1.1 -2.4 Ppx/GppA phosphatase family compare
Ga0059261_3939 -1.1 -2.7 transcriptional regulator, TetR family compare
Ga0059261_3605 -1.1 -1.3 tRNA compare
Ga0059261_1032 -1.1 -2.1 protein CrcB compare
Ga0059261_2764 -1.1 -2.3 Site-specific recombinase XerD compare
Ga0059261_3599 -1.1 -3.8 ADP-ribose pyrophosphatase compare
Ga0059261_0146 -1.1 -1.6 amidohydrolase, PncC family compare
Ga0059261_2531 -1.1 -1.9 conserved hypothetical integral membrane protein compare
Ga0059261_2188 -1.1 -1.3 Uncharacterized conserved protein compare
Ga0059261_3141 -1.1 -1.6 Acetyltransferases compare
Ga0059261_0059 -1.1 -1.3 Stress-induced morphogen (activity unknown) compare
Ga0059261_0201 -1.1 -4.9 Na+/H+-dicarboxylate symporters compare
Ga0059261_3156 -1.1 -2.6 peptidoglycan-associated lipoprotein compare
Ga0059261_3157 -1.1 -5.3 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_4013 -1.1 -1.1 hypothetical protein compare
Ga0059261_3706 -1.1 -2.0 RF-1 domain compare
Ga0059261_2755 -1.1 -2.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
Ga0059261_1300 -1.1 -1.8 hypothetical protein compare
Ga0059261_2502 -1.1 -2.5 Membrane-bound metallopeptidase compare
Ga0059261_0620 -1.1 -6.5 Outer membrane cobalamin receptor protein compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in motility experiments

For motility Agar across organisms