Experiment set5IT082 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Hydrochloric Acid 0.005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_300 -4.3 -5.1 CrcB protein compare
Pf6N2E2_760 -3.6 -13.2 Na+/H+ antiporter NhaB compare
Pf6N2E2_5242 -3.4 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4803 -3.2 -2.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4624 -3.0 -1.5 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5155 -3.0 -3.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3661 -2.9 -4.0 hypothetical protein compare
Pf6N2E2_2274 -2.8 -5.7 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2127 -2.8 -5.2 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3658 -2.4 -6.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_144 -2.4 -14.6 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5319 -2.3 -7.7 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2218 -2.2 -4.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5523 -2.2 -4.9 Small-conductance mechanosensitive channel compare
Pf6N2E2_3659 -2.1 -4.8 Protein fixF compare
Pf6N2E2_3908 -2.1 -5.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_693 -2.1 -3.0 hypothetical protein compare
Pf6N2E2_6090 -2.0 -1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5527 -2.0 -2.4 Cold shock protein CspC compare
Pf6N2E2_4889 -2.0 -5.8 Putative transport protein compare
Pf6N2E2_5567 -1.9 -3.1 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_145 -1.9 -6.1 putative exported protein compare
Pf6N2E2_5318 -1.8 -13.2 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_5775 -1.7 -2.8 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_3303 -1.7 -3.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5522 -1.7 -2.4 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_865 -1.7 -2.4 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2176 -1.6 -2.1 Amidases related to nicotinamidase compare
Pf6N2E2_6065 -1.6 -1.4 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_5766 -1.6 -1.8 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_6140 -1.5 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2549 -1.5 -1.5 hypothetical protein compare
Pf6N2E2_5321 -1.5 -6.5 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_4451 -1.5 -4.6 FIG139438: lipoprotein B compare
Pf6N2E2_2181 -1.5 -1.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3607 -1.5 -5.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5317 -1.5 -8.5 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_2586 -1.5 -2.1 Hpt domain protein compare
Pf6N2E2_2402 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_855 -1.4 -3.4 Transcriptional regulator, IclR family compare
Pf6N2E2_5320 -1.4 -5.6 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_1797 -1.4 -2.4 Transcriptional regulator compare
Pf6N2E2_4181 -1.4 -1.2 Organic hydroperoxide resistance protein compare
Pf6N2E2_5069 -1.4 -4.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_600 -1.3 -2.3 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_4454 -1.3 -4.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3534 -1.3 -1.5 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5316 -1.3 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3260 -1.3 -3.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_1299 -1.3 -2.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2264 -1.3 -3.2 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2506 -1.3 -7.4 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4969 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_1283 -1.2 -2.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2508 -1.2 -2.8 hypothetical protein compare
Pf6N2E2_2513 -1.2 -2.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_414 -1.2 -2.8 Chemotaxis protein CheD compare
Pf6N2E2_5605 -1.2 -1.6 FxsA protein compare
Pf6N2E2_4092 -1.2 -2.0 FIG00954395: hypothetical protein compare
Pf6N2E2_3264 -1.2 -2.4 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5727 -1.2 -3.9 FIG00955360: hypothetical protein compare
Pf6N2E2_4071 -1.2 -3.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2488 -1.2 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5508 -1.2 -1.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_309 -1.2 -1.3 FIG00957702: hypothetical protein compare
Pf6N2E2_2340 -1.1 -3.4 Transcriptional regulator, GntR family compare
Pf6N2E2_460 -1.1 -1.6 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_2266 -1.1 -2.9 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_2217 -1.1 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2507 -1.1 -3.7 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_1743 -1.1 -1.8 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_945 -1.1 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_5967 -1.1 -2.0 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_6057 -1.1 -1.6 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_4072 -1.1 -3.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2064 -1.1 -2.5 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_766 -1.1 -2.7 Fap protein with C39 domain compare
Pf6N2E2_5705 -1.0 -1.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3537 -1.0 -2.7 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_127 -1.0 -1.3 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_1043 -1.0 -2.4 Transcriptional regulator, IclR family compare
Pf6N2E2_3713 -1.0 -2.2 Acyl carrier protein compare
Pf6N2E2_3941 -1.0 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1540 -1.0 -3.7 FIG00953528: hypothetical protein compare
Pf6N2E2_5150 -1.0 -3.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1667 -1.0 -1.9 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3505 -1.0 -1.0 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5761 -1.0 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2039 -1.0 -2.7 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_451 -1.0 -2.2 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_5337 -0.9 -2.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5339 -0.9 -3.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2527 -0.9 -2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3833 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_2282 -0.9 -2.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2674 -0.9 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_3122 -0.9 -1.8 Chemotaxis signal transduction protein compare
Pf6N2E2_1783 -0.9 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_70 -0.9 -1.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_101 -0.9 -2.6 CigR (Putative inner membrane protein) compare
Pf6N2E2_6093 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_3695 -0.9 -2.2 Helix-turn-helix motif compare
Pf6N2E2_5748 -0.9 -1.1 Transcriptional activator protein LuxR compare
Pf6N2E2_2126 -0.9 -3.0 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_96 -0.9 -2.3 FIG011065: hypothetical protein compare
Pf6N2E2_4467 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_2675 -0.9 -1.0 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4369 -0.9 -1.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3529 -0.9 -1.5 Toxin A compare
Pf6N2E2_4077 -0.9 -0.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1611 -0.9 -1.8 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_2189 -0.9 -2.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_833 -0.9 -2.6 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_1287 -0.9 -2.4 Mobile element protein compare
Pf6N2E2_3060 -0.9 -2.1 Outer membrane protein H precursor compare
Pf6N2E2_3611 -0.9 -0.8 HflC protein compare
Pf6N2E2_1824 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_2071 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_4317 -0.9 -2.4 FIG00964469: hypothetical protein compare
Pf6N2E2_1083 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_5877 -0.9 -2.0 Phosphohistidine phosphatase SixA compare
Pf6N2E2_2188 -0.9 -1.7 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_1617 -0.9 -0.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_3475 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_3948 -0.9 -4.7 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5546 -0.9 -3.5 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_2313 -0.9 -1.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3870 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_63 -0.8 -1.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2277 -0.8 -1.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5671 -0.8 -1.8 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4611 -0.8 -2.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1089 -0.8 -1.3 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1548 -0.8 -2.4 Lactoylglutathione lyase compare
Pf6N2E2_4372 -0.8 -2.4 FIG00460773: hypothetical protein compare
Pf6N2E2_3004 -0.8 -2.0 Prophage baseplate assembly protein V compare
Pf6N2E2_1545 -0.8 -2.3 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2999 -0.8 -1.9 probable tail fiber assembly protein compare
Pf6N2E2_1433 -0.8 -2.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4352 -0.8 -1.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3791 -0.8 -4.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2794 -0.8 -1.2 putative membrane protein compare
Pf6N2E2_3841 -0.8 -2.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_1082 -0.8 -1.7 CopG protein compare
Pf6N2E2_1692 -0.8 -1.6 transporter, LysE family compare
Pf6N2E2_5816 -0.8 -1.3 Smr domain protein compare
Pf6N2E2_445 -0.8 -2.9 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2318 -0.8 -3.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3206 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_927 -0.8 -2.0 (AJ250023) putative polyketide synthase compare
Pf6N2E2_1878 -0.8 -3.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_3847 -0.8 -1.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2424 -0.8 -2.5 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_492 -0.8 -2.2 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_2459 -0.8 -1.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_2261 -0.8 -3.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_3325 -0.8 -1.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_417 -0.8 -1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_5945 -0.8 -2.7 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf6N2E2_4987 -0.8 -0.8 MaoC-like domain protein compare
Pf6N2E2_1391 -0.8 -1.5 DNA-binding response regulator, LuxR family compare
Pf6N2E2_4187 -0.8 -2.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4276 -0.8 -2.6 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2646 -0.8 -1.1 FIG00953416: hypothetical protein compare
Pf6N2E2_3589 -0.8 -1.2 Lysine decarboxylase family compare
Pf6N2E2_6099 -0.8 -0.9 tRNA-Glu-TTC compare
Pf6N2E2_5714 -0.8 -1.1 Flavoprotein WrbA compare
Pf6N2E2_2371 -0.8 -1.5 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_723 -0.8 -2.1 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_1815 -0.8 -2.3 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_2509 -0.8 -1.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1525 -0.8 -1.6 Universal stress protein family 5 compare
Pf6N2E2_453 -0.8 -1.8 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4159 -0.8 -1.5 Cytochrome c4 compare
Pf6N2E2_895 -0.8 -2.6 Transcriptional regulator, HxlR family compare
Pf6N2E2_5741 -0.8 -2.9 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_4591 -0.7 -2.7 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_5406 -0.7 -1.4 FIG00958224: hypothetical protein compare
Pf6N2E2_482 -0.7 -1.5 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_5616 -0.7 -3.0 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf6N2E2_2473 -0.7 -0.9 Major outer membrane lipoprotein I compare
Pf6N2E2_2572 -0.7 -1.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3782 -0.7 -1.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4399 -0.7 -2.6 GGDEF domain/EAL domain protein compare
Pf6N2E2_5646 -0.7 -0.6 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2514 -0.7 -2.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5745 -0.7 -3.0 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_3351 -0.7 -2.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_187 -0.7 -2.3 Urea ABC transporter, ATPase protein UrtE compare
Pf6N2E2_4422 -0.7 -1.1 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_3568 -0.7 -1.2 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_5425 -0.7 -0.6 hypothetical protein compare
Pf6N2E2_133 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_5990 -0.7 -1.3 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_161 -0.7 -1.6 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_2472 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_4305 -0.7 -0.8 FIG00959590: hypothetical protein compare
Pf6N2E2_4990 -0.7 -1.3 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_1722 -0.7 -2.1 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) compare
Pf6N2E2_1424 -0.7 -1.0 transcriptional regulator, TetR family compare


Specific Phenotypes

For 1 genes in this experiment

For stress Hydrochloric Acid in Pseudomonas fluorescens FW300-N2E2

For stress Hydrochloric Acid across organisms