Experiment set5IT082 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Hydrochloric Acid 0.005 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_1434 +1.2 2.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2438 +1.1 2.4 hypothetical protein compare
Pf6N2E2_204 +1.1 2.0 hypothetical protein compare
Pf6N2E2_2519 +1.1 1.7 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_1412 +1.0 3.4 hypothetical protein compare
Pf6N2E2_1236 +1.0 2.6 Transcriptional regulator, LysR family compare
Pf6N2E2_5001 +1.0 1.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_1014 +1.0 2.0 Nitrate/nitrite transporter compare
Pf6N2E2_2003 +1.0 1.9 hypothetical protein compare
Pf6N2E2_4459 +1.0 2.3 Transcriptional regulator, GntR family compare
Pf6N2E2_1981 +1.0 2.5 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3744 +0.9 2.2 General secretion pathway protein F compare
Pf6N2E2_5207 +0.9 1.6 hypothetical protein compare
Pf6N2E2_5720 +0.9 6.9 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3875 +0.9 1.5 FIG00953324: hypothetical protein compare
Pf6N2E2_1579 +0.9 3.4 hypothetical protein compare
Pf6N2E2_1213 +0.9 1.8 hypothetical protein compare
Pf6N2E2_4272 +0.9 3.2 putative membrane protein compare
Pf6N2E2_5291 +0.9 7.7 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2536 +0.9 1.7 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_2518 +0.8 2.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_89 +0.8 1.2 hypothetical protein compare
Pf6N2E2_4640 +0.8 1.7 hypothetical protein compare
Pf6N2E2_3763 +0.8 1.8 hypothetical protein compare
Pf6N2E2_1056 +0.8 1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_250 +0.8 3.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5841 +0.8 1.2 GlcG protein compare
Pf6N2E2_4057 +0.8 0.8 lipoprotein, putative compare
Pf6N2E2_4543 +0.8 1.8 hypothetical protein compare
Pf6N2E2_5739 +0.8 1.2 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_1477 +0.8 3.4 hypothetical protein compare
Pf6N2E2_2688 +0.7 2.3 YD repeat protein compare
Pf6N2E2_603 +0.7 2.0 FIG00953934: hypothetical protein compare
Pf6N2E2_2288 +0.7 3.0 FIG00953423: hypothetical protein compare
Pf6N2E2_5756 +0.7 2.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4710 +0.7 2.1 hypothetical protein compare
Pf6N2E2_16 +0.7 1.3 hypothetical protein compare
Pf6N2E2_3338 +0.7 1.8 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_1090 +0.7 2.9 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf6N2E2_5950 +0.7 2.4 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_533 +0.7 1.7 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_3134 +0.7 0.9 hypothetical protein compare
Pf6N2E2_733 +0.7 1.6 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_2262 +0.7 2.2 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_692 +0.7 2.7 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_238 +0.7 1.6 hypothetical protein compare
Pf6N2E2_928 +0.7 1.9 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_1462 +0.7 1.9 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_4708 +0.7 2.1 hypothetical protein compare
Pf6N2E2_4418 +0.7 0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5584 +0.7 1.3 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_146 +0.7 1.9 Transcriptional regulator, MarR family compare
Pf6N2E2_4778 +0.7 5.6 Lysine 2-monooxygenase (EC 1.13.12.2) (from data) compare
Pf6N2E2_62 +0.7 2.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4747 +0.7 1.8 Transmembrane sensor compare
Pf6N2E2_4691 +0.7 1.8 hypothetical protein compare
Pf6N2E2_367 +0.6 1.9 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4145 +0.6 2.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_3472 +0.6 2.3 Probable short-chain dehydrogenase compare
Pf6N2E2_160 +0.6 1.2 hypothetical protein compare
Pf6N2E2_5921 +0.6 2.6 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf6N2E2_2636 +0.6 1.6 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3844 +0.6 0.9 hypothetical protein compare
Pf6N2E2_1673 +0.6 1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_3426 +0.6 3.2 Peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_3617 +0.6 2.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4601 +0.6 1.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4426 +0.6 2.8 DNA-binding protein inhibitor Id-2-related protein compare
Pf6N2E2_1966 +0.6 1.2 SAM-dependent methyltransferases compare
Pf6N2E2_904 +0.6 1.2 hypothetical protein compare
Pf6N2E2_1633 +0.6 2.4 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_1116 +0.6 1.2 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1720 +0.6 1.2 hypothetical protein compare
Pf6N2E2_553 +0.6 2.0 Uncharacterized protein ImpD compare
Pf6N2E2_331 +0.6 1.5 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_1501 +0.6 1.9 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_1634 +0.6 2.8 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_5047 +0.6 2.5 NAD(FAD)-utilizing dehydrogenases compare
Pf6N2E2_4206 +0.6 1.2 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1504 +0.6 1.4 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_1293 +0.6 1.3 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_5723 +0.6 4.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_2904 +0.6 1.4 Hypothetical protein DUF454 compare
Pf6N2E2_3026 +0.6 2.4 Baseplate assembly protein W compare
Pf6N2E2_1716 +0.6 2.0 Phenylacetate-coenzyme A ligase (EC 6.2.1.30) compare
Pf6N2E2_4751 +0.6 1.8 response regulator compare
Pf6N2E2_3455 +0.6 1.6 Integral membrane protein YfiB compare
Pf6N2E2_4918 +0.6 1.8 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_5749 +0.6 1.8 hypothetical protein compare
Pf6N2E2_88 +0.6 1.3 hypothetical protein compare
Pf6N2E2_6113 +0.6 2.2 tRNA-Gly-CCC compare
Pf6N2E2_2420 +0.5 1.4 hypothetical protein compare
Pf6N2E2_3702 +0.5 1.6 FIG00953907: hypothetical protein compare
Pf6N2E2_3635 +0.5 1.3 FIG00953138: hypothetical protein compare
Pf6N2E2_2477 +0.5 0.7 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_4453 +0.5 4.5 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_342 +0.5 0.9 DNA-binding response regulator compare
Pf6N2E2_1674 +0.5 2.9 Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) compare
Pf6N2E2_1339 +0.5 1.3 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_967 +0.5 2.1 DNA repair protein RadC compare
Pf6N2E2_2247 +0.5 1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_5014 +0.5 0.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4421 +0.5 2.8 hypothetical protein compare
Pf6N2E2_1046 +0.5 1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5265 +0.5 1.8 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf6N2E2_3709 +0.5 3.1 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2790 +0.5 1.4 Helix-turn-helix motif compare
Pf6N2E2_669 +0.5 2.1 Nuclease inhibitor compare
Pf6N2E2_478 +0.5 1.4 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_1353 +0.5 2.4 FIG002577: Putative lipoprotein precursor compare
Pf6N2E2_5773 +0.5 2.4 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_6070 +0.5 1.0 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_5679 +0.5 2.5 hypothetical protein compare
Pf6N2E2_1859 +0.5 1.1 hypothetical protein compare
Pf6N2E2_2074 +0.5 0.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_477 +0.5 1.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_6045 +0.5 0.8 hypothetical protein compare
Pf6N2E2_2286 +0.5 1.0 FIG00953287: hypothetical protein compare
Pf6N2E2_1994 +0.5 1.6 putative lipoprotein compare
Pf6N2E2_924 +0.5 1.2 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_3696 +0.5 0.7 hypothetical protein compare
Pf6N2E2_988 +0.5 1.3 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_4626 +0.5 2.4 Malonate transporter, MadL subunit compare
Pf6N2E2_2213 +0.5 1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_700 +0.5 1.2 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_2158 +0.5 2.4 Signal transduction histidine kinase compare
Pf6N2E2_5444 +0.5 1.9 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_946 +0.5 1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_4335 +0.5 1.9 Uncharacterized protein ImpB compare
Pf6N2E2_3527 +0.5 2.6 hypothetical protein compare
Pf6N2E2_1148 +0.5 0.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_1821 +0.5 0.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_419 +0.5 1.5 STAS domain protein compare
Pf6N2E2_870 +0.5 1.9 DNA-binding response regulator compare
Pf6N2E2_2413 +0.5 0.7 FIG074102: hypothetical protein compare
Pf6N2E2_3717 +0.5 2.3 Lysophospholipid acyltransferase compare
Pf6N2E2_544 +0.5 1.6 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_3698 +0.5 1.2 Nicotinamidase family protein YcaC compare
Pf6N2E2_1452 +0.5 1.2 hypothetical protein compare
Pf6N2E2_2386 +0.5 1.6 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_3587 +0.5 1.4 Azurin compare
Pf6N2E2_4980 +0.5 2.6 hypothetical protein compare
Pf6N2E2_2467 +0.5 1.7 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_3820 +0.5 0.8 hypothetical protein compare
Pf6N2E2_2580 +0.5 1.6 Flagellar biosynthesis protein FliP compare
Pf6N2E2_1920 +0.5 1.5 Rubredoxin compare
Pf6N2E2_2140 +0.5 2.0 Paraquat-inducible protein A compare
Pf6N2E2_942 +0.5 0.9 Mll6465 protein compare
Pf6N2E2_961 +0.5 0.8 FIG00954712: hypothetical protein compare
Pf6N2E2_5386 +0.5 2.6 Alginate biosynthesis protein Alg44 compare
Pf6N2E2_5441 +0.5 1.9 FIG00955104: hypothetical protein compare
Pf6N2E2_58 +0.5 1.2 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2002 +0.5 1.7 hypothetical protein compare
Pf6N2E2_5943 +0.5 1.1 hypothetical protein compare
Pf6N2E2_1740 +0.5 1.2 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_4449 +0.5 2.3 Sigma cross-reacting protein 27A compare
Pf6N2E2_1386 +0.5 1.7 amino acid ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_3687 +0.5 1.8 FIG00959437: hypothetical protein compare
Pf6N2E2_2267 +0.5 1.2 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_799 +0.5 1.2 hypothetical protein compare
Pf6N2E2_831 +0.5 1.3 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_1814 +0.5 1.2 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_5992 +0.5 2.0 Collagenase and related proteases compare
Pf6N2E2_1683 +0.5 1.2 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_968 +0.4 1.5 FIG00962395: hypothetical protein compare
Pf6N2E2_2069 +0.4 1.2 FIG00953703: hypothetical protein compare
Pf6N2E2_1775 +0.4 1.7 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_1354 +0.4 1.6 FIG026291: Hypothetical periplasmic protein compare
Pf6N2E2_3648 +0.4 2.0 Ethidium bromide-methyl viologen resistance protein EmrE compare
Pf6N2E2_3958 +0.4 1.1 Putative stomatin/prohibitin-family membrane protease subunit aq_911 compare
Pf6N2E2_5704 +0.4 2.1 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2001 +0.4 2.6 Nuclease precursor (EC 3.1.30.2) compare
Pf6N2E2_2582 +0.4 1.4 Flagellar motor switch protein FliN compare
Pf6N2E2_6072 +0.4 2.7 FIG137594: Putative iron-regulated membrane protein compare
Pf6N2E2_819 +0.4 1.1 Response regulator compare
Pf6N2E2_1442 +0.4 1.9 Transcriptional regulators of sugar metabolism compare
Pf6N2E2_4962 +0.4 1.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1005 +0.4 2.0 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_1759 +0.4 1.2 uncharacterized domain 1 compare
Pf6N2E2_2057 +0.4 2.6 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf6N2E2_1309 +0.4 2.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) compare
Pf6N2E2_2753 +0.4 0.9 HtrA protease/chaperone protein compare
Pf6N2E2_915 +0.4 1.6 FIG00962566: hypothetical protein compare
Pf6N2E2_746 +0.4 0.6 FIG00958097: hypothetical protein compare
Pf6N2E2_2178 +0.4 2.0 FIG00960144: hypothetical protein compare
Pf6N2E2_1195 +0.4 1.1 hypothetical protein compare
Pf6N2E2_3899 +0.4 3.0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2185 +0.4 2.7 carboxyphosphonoenolpyruvate phosphonomutase, putative compare
Pf6N2E2_1705 +0.4 0.7 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2849 +0.4 1.3 Chromosome initiation inhibitor compare
Pf6N2E2_1086 +0.4 2.1 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching compare
Pf6N2E2_189 +0.4 1.1 regulatory protein, putative compare
Pf6N2E2_116 +0.4 1.3 Glycosyltransferase compare
Pf6N2E2_3224 +0.4 1.2 Lactoylglutathione lyase and related lyases compare
Pf6N2E2_3947 +0.4 0.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_1118 +0.4 2.5 FIG054297: Transcriptional regulator, AraC family compare
Pf6N2E2_6164 +0.4 0.7 tRNA-Val-TAC compare
Pf6N2E2_2017 +0.4 1.4 DNA-binding protein compare
Pf6N2E2_4377 +0.4 1.9 DNA repair protein RadC compare
Pf6N2E2_5428 +0.4 1.7 DNA recombination and repair protein RecO compare


Specific Phenotypes

For 1 genes in this experiment

For stress Hydrochloric Acid in Pseudomonas fluorescens FW300-N2E2

For stress Hydrochloric Acid across organisms