Experiment set5IT082 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21405 -6.3 -4.3 3-isopropylmalate dehydratase compare
AO356_21440 -5.9 -5.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_08635 -5.8 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
AO356_14440 -5.7 -4.0 indole-3-glycerol-phosphate synthase compare
AO356_06970 -5.7 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_09815 -5.6 -3.9 imidazoleglycerol-phosphate dehydratase compare
AO356_13410 -5.5 -8.4 homoserine O-acetyltransferase compare
AO356_09525 -5.5 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_13085 -5.4 -7.4 N-acetylglutamate synthase compare
AO356_18325 -5.4 -9.0 argininosuccinate synthase compare
AO356_14435 -5.4 -5.2 anthranilate phosphoribosyltransferase compare
AO356_12525 -5.2 -7.1 acetylglutamate kinase compare
AO356_13405 -5.0 -10.1 methionine biosynthesis protein MetW compare
AO356_21415 -4.9 -10.9 3-isopropylmalate dehydrogenase compare
AO356_14420 -4.9 -13.4 anthranilate synthase compare
AO356_19090 -4.9 -3.3 phosphoribosylaminoimidazole synthetase compare
AO356_18275 -4.8 -10.8 ornithine carbamoyltransferase compare
AO356_09520 -4.8 -4.7 phosphoribosyl-AMP cyclohydrolase compare
AO356_09810 -4.8 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
AO356_20830 -4.7 -4.6 phosphoadenosine phosphosulfate reductase compare
AO356_10915 -4.7 -10.0 tryptophan synthase subunit beta compare
AO356_13250 -4.7 -9.5 dihydroxy-acid dehydratase compare
AO356_14430 -4.7 -8.7 anthranilate synthase compare
AO356_09375 -4.7 -22.1 glutamate synthase compare
AO356_06965 -4.7 -7.8 histidinol dehydrogenase compare
AO356_00560 -4.6 -3.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_12020 -4.6 -12.5 pyruvate carboxylase subunit A compare
AO356_22200 -4.5 -8.1 sirohydrochlorin ferrochelatase compare
AO356_10910 -4.5 -8.1 tryptophan synthase subunit alpha compare
AO356_10340 -4.5 -14.2 phosphoserine phosphatase compare
AO356_09800 -4.5 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_16175 -4.4 -6.8 acetolactate synthase 3 regulatory subunit compare
AO356_12025 -4.4 -16.3 pyruvate carboxylase subunit B compare
AO356_12520 -4.3 -3.0 orotate phosphoribosyltransferase compare
AO356_13605 -4.3 -5.9 5,10-methylenetetrahydrofolate reductase compare
AO356_00555 -4.3 -11.0 sulfite reductase compare
AO356_21470 -4.3 -8.0 O-succinylhomoserine sulfhydrylase compare
AO356_21465 -4.2 -5.7 amidophosphoribosyltransferase compare
AO356_16075 -4.1 -2.9 Fis family transcriptional regulator compare
AO356_09370 -4.1 -11.9 glutamate synthase compare
AO356_08735 -4.1 -13.8 phosphoserine phosphatase compare
AO356_00035 -4.1 -12.2 Fructokinase (EC 2.7.1.4) (from data) compare
AO356_16170 -4.0 -11.2 acetolactate synthase 3 catalytic subunit compare
AO356_06550 -4.0 -11.5 2-isopropylmalate synthase compare
AO356_16180 -3.9 -15.5 ketol-acid reductoisomerase compare
AO356_19795 -3.9 -2.7 glycerol-3-phosphate dehydrogenase compare
AO356_14135 -3.8 -16.3 biotin synthase compare
AO356_12780 -3.7 -9.2 argininosuccinate lyase compare
AO356_15165 -3.6 -3.5 protein cII compare
AO356_17520 -3.5 -2.4 phosphoribosylformylglycinamidine synthase compare
AO356_12015 -3.5 -11.1 LysR family transcriptional regulator compare
AO356_19085 -3.4 -8.8 phosphoribosylglycinamide formyltransferase compare
AO356_05160 -3.4 -9.5 glucose-6-phosphate dehydrogenase compare
AO356_14295 -3.4 -2.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_16050 -3.3 -2.3 glucose-6-phosphate isomerase compare
AO356_10300 -3.2 -5.5 3-phosphoglycerate dehydrogenase compare
AO356_09795 -3.2 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
AO356_00355 -3.2 -9.7 chemotaxis protein CheY compare
AO356_22795 -3.2 -5.1 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_21330 -3.1 -9.9 aromatic amino acid aminotransferase compare
AO356_21400 -3.1 -5.2 isopropylmalate isomerase compare
AO356_01745 -3.0 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_19045 -2.9 -11.4 chemotaxis protein CheY compare
AO356_08895 -2.9 -2.8 GlcNAc-PI de-N-acetylase compare
AO356_27180 -2.8 -5.7 hypothetical protein compare
AO356_11315 -2.7 -1.9 shikimate dehydrogenase compare
AO356_03810 -2.6 -6.2 anti-anti-sigma factor compare
AO356_05225 -2.6 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_05670 -2.6 -3.8 recombinase RecA compare
AO356_07480 -2.5 -3.4 carbamoyl phosphate synthase large subunit compare
AO356_07915 -2.4 -2.3 exodeoxyribonuclease V subunit beta compare
AO356_05200 -2.4 -9.9 D-mannose isomerase (EC 5.3.1.7) (from data) conserved
AO356_01750 -2.4 -4.2 ATP-dependent Clp protease proteolytic subunit compare
AO356_19050 -2.4 -3.1 cysteine synthase compare
AO356_17830 -2.4 -6.3 pyruvate kinase compare
AO356_12380 -2.3 -8.2 ATP-dependent DNA helicase RecG compare
AO356_18730 -2.3 -9.6 arginine N-succinyltransferase compare
AO356_18025 -2.3 -3.4 ATP-dependent DNA helicase RuvB compare
AO356_05735 -2.2 -2.1 hypothetical protein compare
AO356_17950 -2.2 -8.7 histidine kinase compare
AO356_12005 -2.1 -10.8 transcriptional regulator compare
AO356_07390 -2.1 -2.2 polyribonucleotide nucleotidyltransferase compare
AO356_12990 -2.1 -7.7 5-formyltetrahydrofolate cyclo-ligase compare
AO356_12825 -2.0 -2.4 hypothetical protein compare
AO356_28540 -2.0 -8.4 D-mannose transporter (from data) compare
AO356_17890 -2.0 -2.9 H-NS histone compare
AO356_18735 -2.0 -5.8 arginine N-succinyltransferase compare
AO356_05080 -2.0 -1.8 peptide deformylase compare
AO356_14150 -2.0 -7.7 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_14155 -2.0 -7.1 dethiobiotin synthetase compare
AO356_02315 -2.0 -3.2 DNA topoisomerase I compare
AO356_28550 -1.9 -7.0 bifunctional D-altronate/D-mannonate dehydratase compare
AO356_24845 -1.9 -3.3 ATPase compare
AO356_27205 -1.9 -6.6 hypothetical protein compare
AO356_20175 -1.8 -1.7 3-oxoacyl-ACP synthase compare
AO356_13570 -1.8 -8.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_14140 -1.7 -10.3 8-amino-7-oxononanoate synthase compare
AO356_15815 -1.7 -2.0 gamma-glutamyl kinase compare
AO356_27250 -1.7 -5.6 hypothetical protein compare
AO356_18020 -1.7 -3.2 ATP-dependent DNA helicase RuvA compare
AO356_04560 -1.7 -2.9 serine peptidase compare
AO356_27215 -1.7 -2.5 hypothetical protein compare
AO356_20475 -1.6 -3.0 hypothetical protein compare
AO356_16070 -1.6 -5.4 poly(A) polymerase compare
AO356_14145 -1.6 -5.1 transporter compare
AO356_07910 -1.6 -2.1 exodeoxyribonuclease V subunit alpha compare
AO356_28535 -1.6 -5.1 mannitol dehydrogenase compare
AO356_08905 -1.6 -1.4 glycosyl transferase compare
AO356_06575 -1.6 -3.2 outer membrane protein assembly factor BamB compare
AO356_14100 -1.6 -7.0 malate synthase G compare
AO356_12900 -1.5 -4.0 exopolyphosphatase compare
AO356_20285 -1.5 -3.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
AO356_08280 -1.5 -4.2 oxidoreductase compare
AO356_27230 -1.5 -4.8 hypothetical protein compare
AO356_06960 -1.5 -5.1 histidinol-phosphate aminotransferase compare
AO356_27210 -1.5 -5.9 hypothetical protein compare
AO356_03400 -1.4 -5.5 aminotransferase DegT compare
AO356_02190 -1.4 -5.6 hypothetical protein compare
AO356_28530 -1.4 -3.8 mannonate dehydratase compare
AO356_07005 -1.4 -1.6 ABC transporter ATP-binding protein compare
AO356_06385 -1.4 -2.9 recombinase XerD compare
AO356_10330 -1.3 -8.8 threonine dehydratase compare
AO356_12725 -1.3 -3.8 recombinase XerC compare
AO356_02175 -1.3 -6.1 transaldolase compare
AO356_11025 -1.3 -3.6 transcriptional regulator PhoU compare
AO356_06065 -1.3 -3.0 ArsC family transcriptional regulator compare
AO356_16665 -1.3 -8.6 sulfate adenylyltransferase compare
AO356_08890 -1.3 -6.4 glycosyltransferase compare
AO356_06690 -1.3 -2.0 queuine tRNA-ribosyltransferase compare
AO356_10585 -1.3 -8.1 hypothetical protein compare
AO356_01555 -1.3 -5.6 acyl-CoA dehydrogenase compare
AO356_08975 -1.2 -7.2 diguanylate cyclase compare
AO356_19060 -1.2 -9.2 (p)ppGpp synthetase compare
AO356_17985 -1.2 -4.1 cold-shock protein compare
AO356_11465 -1.2 -6.3 DNA polymerase I compare
AO356_10075 -1.2 -4.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_16095 -1.2 -5.4 molecular chaperone DnaK compare
AO356_02465 -1.2 -2.1 carbonate dehydratase compare
AO356_12375 -1.2 -7.6 histidine kinase compare
AO356_25170 -1.2 -2.1 lipid carrier protein compare
AO356_11675 -1.2 -6.3 chromosome partitioning protein compare
AO356_16670 -1.1 -7.3 adenylylsulfate kinase compare
AO356_23540 -1.1 -3.7 GntR family transcriptional regulator compare
AO356_07540 -1.1 -1.5 SsrA-binding protein compare
AO356_02310 -1.1 -3.1 PasA protein compare
AO356_19520 -1.1 -3.5 isochorismatase compare
AO356_03800 -1.1 -2.0 histidine kinase compare
AO356_21410 -1.1 -2.3 SAM-dependent methyltransferase compare
AO356_03070 -1.1 -7.2 histidine kinase compare
AO356_06990 -1.1 -3.4 toluene tolerance protein compare
AO356_11680 -1.1 -1.2 chromosome partitioning protein ParB compare
AO356_09780 -1.1 -3.6 peptidase S41 compare
AO356_08660 -1.0 -5.5 tRNA dimethylallyltransferase compare
AO356_30345 -1.0 -3.9 IclR family transcriptional regulator compare
AO356_05010 -1.0 -6.6 diguanylate cyclase compare
AO356_03180 -1.0 -3.3 CysB family transcriptional regulator compare
AO356_12515 -1.0 -2.7 exodeoxyribonuclease III compare
AO356_19240 -1.0 -1.2 cupin compare
AO356_06995 -1.0 -4.0 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_13445 -1.0 -1.3 dihydroorotase compare
AO356_28555 -1.0 -2.8 ketodeoxygluconokinase compare
AO356_00500 -1.0 -3.1 magnesium chelatase compare
AO356_09730 -1.0 -3.2 nitrogen regulation protein NR(I) compare
AO356_08585 -1.0 -2.2 50S ribosomal protein L9 compare
AO356_28610 -1.0 -1.3 AraC family transcriptional regulator compare
AO356_08235 -1.0 -5.0 histidine kinase compare
AO356_16600 -1.0 -1.8 malate:quinone oxidoreductase compare
AO356_03725 -1.0 -2.0 histidine kinase compare
AO356_08610 -0.9 -4.6 exoribonuclease R compare
AO356_14915 -0.9 -2.6 methyltransferase compare
AO356_24555 -0.9 -1.9 hypothetical protein compare
AO356_02325 -0.9 -1.9 3-ketoacyl-CoA thiolase compare
AO356_20785 -0.9 -1.3 hypothetical protein compare
AO356_03405 -0.9 -2.9 serine acetyltransferase compare
AO356_13685 -0.9 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_05900 -0.9 -3.9 stationary phase survival protein SurE compare
AO356_02050 -0.9 -4.0 phage tail protein compare
AO356_11990 -0.9 -5.9 DNA helicase II compare
AO356_17485 -0.9 -3.1 elongation factor 4 compare
AO356_12735 -0.9 -1.3 diaminopimelate epimerase compare
AO356_07105 -0.9 -4.4 hypothetical protein compare
AO356_13695 -0.9 -3.3 hypothetical protein compare
AO356_19180 -0.9 -2.1 cobalamin synthase compare
AO356_02250 -0.9 -4.5 pyridine nucleotide-disulfide oxidoreductase compare
AO356_02290 -0.9 -2.2 TetR family transcriptional regulator compare
AO356_08985 -0.9 -0.9 hypothetical protein compare
AO356_16485 -0.9 -4.3 hypothetical protein compare
AO356_07325 -0.8 -5.1 fructose phosphotransferase system, IIB/IIC components (EC 2.7.1.202) (from data) compare
AO356_16080 -0.8 -5.2 ATPase compare
AO356_07340 -0.8 -4.5 transcriptional regulator compare
AO356_03455 -0.8 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO356_19935 -0.8 -1.1 pilus assembly protein PilA compare
AO356_06050 -0.8 -5.5 protein-PII uridylyltransferase compare
AO356_30265 -0.8 -1.9 cupin compare
AO356_16505 -0.8 -1.4 molybdopterin-synthase adenylyltransferase compare
AO356_07000 -0.8 -1.8 ABC transporter permease compare
AO356_27240 -0.8 -2.2 hypothetical protein compare
AO356_27585 -0.8 -3.1 AcrR family transcriptional regulator compare
AO356_10005 -0.8 -5.4 branched-chain amino acid permease (azaleucine resistance) compare
AO356_00880 -0.8 -1.3 integration host factor subunit alpha compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Mannose in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Mannose across organisms