Experiment set5IT082 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_aerobic_180MIN_ZN15A

200 most important genes:

  gene name fitness t score description  
CSW01_11535 -3.2 -8.0 thiamine-phosphate kinase compare
CSW01_01300 -3.1 -5.1 sugar ABC transporter compare
CSW01_02875 -2.7 -8.8 DNA recombination/repair protein RecA compare
CSW01_10190 -2.5 -7.9 nucleoid-associated protein compare
CSW01_02890 -2.4 -10.3 aspartate kinase compare
CSW01_04650 -2.0 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_08450 -2.0 -2.8 antimicrobial peptide ABC transporter permease SapB compare
CSW01_11670 -1.9 -1.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_13805 -1.8 -3.9 Hsp33 family molecular chaperone HslO compare
CSW01_03985 -1.8 -3.8 GMP synthase (glutamine-hydrolyzing) compare
CSW01_09245 -1.8 -5.5 Holliday junction branch migration protein RuvA compare
CSW01_12250 -1.7 -6.9 site-specific tyrosine recombinase XerD compare
CSW01_09240 -1.7 -4.8 Holliday junction branch migration DNA helicase RuvB compare
CSW01_00650 -1.6 -7.9 tyrosine recombinase XerC compare
CSW01_00560 -1.4 -2.4 DNA polymerase I compare
CSW01_18350 -1.4 -1.4 cell division protein DedD compare
CSW01_01295 -1.3 -1.8 ABC transporter permease compare
CSW01_09525 -1.3 -0.8 DNA translocase FtsK compare
CSW01_04375 -1.2 -4.2 SsrA-binding protein compare
CSW01_03870 -1.2 -1.6 inositol monophosphatase compare
CSW01_14055 -1.2 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_05575 -1.2 -3.4 phosphate acetyltransferase compare
CSW01_03790 -1.2 -2.9 phosphate ABC transporter, permease protein PstA compare
CSW01_03155 -1.2 -7.0 RNA polymerase-binding transcription factor DksA compare
CSW01_03045 -1.2 -3.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_04910 -1.2 -3.5 PhoH family protein compare
CSW01_08935 -1.1 -2.0 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_01265 -1.1 -2.6 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_05265 -1.1 -2.0 methionine--tRNA ligase compare
CSW01_01490 -1.1 -2.8 Fis family transcriptional regulator compare
CSW01_03785 -1.1 -2.3 phosphate ABC transporter permease compare
CSW01_13305 -1.0 -1.9 shikimate kinase compare
CSW01_10485 -1.0 -1.6 DUF2788 domain-containing protein compare
CSW01_13285 -1.0 -2.3 ribulose-phosphate 3-epimerase compare
CSW01_10710 -1.0 -6.2 deferrochelatase compare
CSW01_15120 -1.0 -4.2 iron(III) ABC transporter permease compare
CSW01_12255 -1.0 -3.1 flavodoxin FldB compare
CSW01_08630 -1.0 -4.6 condensin subunit F compare
CSW01_05195 -1.0 -3.6 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_11730 -1.0 -1.7 2-dehydropantoate 2-reductase compare
CSW01_11690 -0.9 -6.0 hypothetical protein compare
CSW01_11565 -0.9 -1.9 transcriptional regulator NrdR compare
CSW01_02970 -0.9 -5.0 glutamate--cysteine ligase compare
CSW01_10290 -0.9 -3.5 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_13300 -0.9 -4.7 3-dehydroquinate synthase compare
CSW01_12815 -0.9 -5.5 RNA polymerase sigma-54 factor compare
CSW01_14910 -0.9 -2.1 cold-shock protein compare
CSW01_08620 -0.9 -6.4 chromosome partition protein MukB compare
CSW01_18420 -0.9 -3.5 hypothetical protein compare
CSW01_06970 -0.9 -2.5 DUF2256 domain-containing protein compare
CSW01_01245 -0.9 -3.1 lipopolysaccharide heptosyltransferase II compare
CSW01_08625 -0.9 -4.1 chromosome partition protein MukE compare
CSW01_08730 -0.9 -1.4 phage-shock protein compare
CSW01_07210 -0.9 -2.4 hypothetical protein compare
CSW01_00095 -0.8 -2.1 hypothetical protein compare
CSW01_00025 -0.8 -1.1 membrane protein insertion efficiency factor YidD compare
CSW01_01015 -0.8 -6.1 DNA helicase II compare
CSW01_16310 -0.8 -1.5 DUF3709 domain-containing protein compare
CSW01_13420 -0.8 -2.0 elongation factor P--(R)-beta-lysine ligase compare
CSW01_10750 -0.8 -3.0 outer membrane protein assembly factor BamC compare
CSW01_03050 -0.8 -3.3 cytochrome b compare
CSW01_09250 -0.8 -1.0 crossover junction endodeoxyribonuclease RuvC compare
CSW01_17855 -0.8 -6.2 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_05900 -0.8 -2.0 carboxy-S-adenosyl-L-methionine synthase CmoA compare
CSW01_03055 -0.8 -2.6 cytochrome c1 compare
CSW01_12480 -0.8 -1.3 sigma-E factor negative regulatory protein RseA compare
CSW01_07230 -0.8 -3.9 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_02490 -0.8 -3.8 glutathione synthetase compare
CSW01_02755 -0.7 -1.5 glutamyl-tRNA amidotransferase compare
CSW01_03980 -0.7 -4.7 IMP dehydrogenase compare
CSW01_18310 -0.7 -1.0 hypothetical protein compare
CSW01_16195 -0.7 -1.2 DUF645 domain-containing protein compare
CSW01_14680 -0.7 -1.4 aminotransferase compare
CSW01_11780 -0.7 -0.8 exodeoxyribonuclease V subunit beta compare
CSW01_11255 -0.7 -2.9 flagellar biosynthesis protein FlgP compare
CSW01_12320 -0.7 -1.2 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_10875 -0.7 -2.4 redox-regulated ATPase YchF compare
CSW01_10285 -0.7 -1.8 heme exporter protein CcmB compare
CSW01_00465 -0.7 -2.7 twin-arginine translocase subunit TatB compare
CSW01_16325 -0.7 -1.4 hypothetical protein compare
CSW01_16085 -0.7 -2.0 hypothetical protein compare
CSW01_04390 -0.7 -1.8 outer membrane protein assembly factor BamE compare
CSW01_00495 -0.7 -0.8 SOS-response transcriptional repressor compare
CSW01_03695 -0.7 -2.7 ribosomal large subunit pseudouridine synthase D compare
CSW01_14125 -0.7 -3.2 1,4-alpha-glucan branching enzyme compare
CSW01_04850 -0.7 -4.4 septal ring lytic transglycosylase RlpA compare
CSW01_11915 -0.7 -3.3 hypothetical protein compare
CSW01_05580 -0.7 -3.2 acetate kinase compare
CSW01_15870 -0.6 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_07445 -0.6 -2.1 macrodomain Ter protein MatP compare
CSW01_17780 -0.6 -2.0 hypothetical protein compare
CSW01_18760 -0.6 -3.8 dihydroorotase compare
CSW01_08240 -0.6 -1.5 ATP-binding protein compare
CSW01_03795 -0.6 -0.8 phosphate ABC transporter ATP-binding protein compare
CSW01_10565 -0.6 -1.6 hypothetical protein compare
CSW01_00470 -0.6 -2.2 twin-arginine translocase subunit TatC compare
CSW01_04820 -0.6 -3.9 serine hydroxymethyltransferase compare
CSW01_03475 -0.6 -2.0 ATP-dependent RNA helicase SrmB compare
CSW01_06280 -0.6 -3.1 succinylglutamate desuccinylase compare
CSW01_13410 -0.6 -2.6 protein-export protein SecB compare
CSW01_13620 -0.6 -4.7 aspartate ammonia-lyase compare
CSW01_10420 -0.6 -2.7 succinyl-CoA ligase subunit beta compare
CSW01_00065 -0.6 -3.6 DNA replication and repair protein RecF compare
CSW01_02315 -0.6 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_06415 -0.6 -1.2 MBL fold metallo-hydrolase compare
CSW01_15680 -0.6 -1.4 DUF3265 domain-containing protein compare
CSW01_03330 -0.6 -1.4 transcription elongation factor GreA compare
CSW01_19095 -0.5 -2.3 DUF445 domain-containing protein compare
CSW01_17090 -0.5 -3.4 SPOR domain-containing protein compare
CSW01_11785 -0.5 -0.8 exonuclease V subunit gamma compare
CSW01_09465 -0.5 -2.6 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_16785 -0.5 -1.4 hypothetical protein compare
CSW01_18635 -0.5 -2.5 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_07520 -0.5 -2.0 RNA chaperone ProQ compare
CSW01_15430 -0.5 -1.1 hypothetical protein compare
CSW01_11415 -0.5 -2.4 phenolic acid decarboxylase compare
CSW01_06420 -0.5 -2.0 DUF2982 domain-containing protein compare
CSW01_19545 -0.5 -2.1 chemotaxis protein CheW compare
CSW01_05260 -0.5 -1.6 hypothetical protein compare
CSW01_00400 -0.5 -1.6 hypothetical protein compare
CSW01_09625 -0.5 -0.9 hypothetical protein compare
CSW01_18495 -0.5 -1.3 cytochrome bd-I oxidase subunit CydX compare
CSW01_10445 -0.5 -1.6 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_18525 -0.5 -1.3 integrase compare
CSW01_13220 -0.5 -0.9 hypothetical protein compare
CSW01_10440 -0.5 -1.4 succinate dehydrogenase flavoprotein subunit compare
CSW01_19600 -0.5 -3.0 hypothetical protein compare
CSW01_18315 -0.5 -1.7 methyltransferase compare
CSW01_01120 -0.5 -4.1 orotate phosphoribosyltransferase compare
CSW01_00450 -0.5 -1.0 SCP2 domain-containing protein compare
CSW01_13445 -0.5 -0.5 elongation factor P compare
CSW01_04315 -0.5 -2.6 TCP pilus virulence regulatory protein compare
CSW01_06920 -0.5 -1.4 DUF2760 domain-containing protein compare
CSW01_04845 -0.5 -2.0 D-alanyl-D-alanine carboxypeptidase compare
CSW01_08435 -0.5 -2.1 phage shock protein PspA compare
CSW01_13395 -0.5 -2.7 PadR family transcriptional regulator compare
CSW01_06565 -0.5 -3.4 L-serine ammonia-lyase compare
CSW01_06585 -0.5 -1.1 fumarate hydratase compare
CSW01_02205 -0.5 -3.0 ribonuclease E/G compare
CSW01_07195 -0.5 -1.1 cytochrome biogenesis protein compare
CSW01_12365 -0.5 -1.3 inorganic phosphate transporter compare
CSW01_04195 -0.5 -2.8 class I SAM-dependent methyltransferase compare
CSW01_09560 -0.5 -2.0 orotidine-5'-phosphate decarboxylase compare
CSW01_18000 -0.5 -2.2 NUDIX hydrolase compare
CSW01_10265 -0.5 -2.1 c-type cytochrome biogenesis protein CcmF compare
CSW01_06530 -0.5 -2.8 aromatic amino acid aminotransferase compare
CSW01_01045 -0.5 -3.9 DNA helicase RecQ compare
CSW01_02450 -0.5 -2.8 pyrroline-5-carboxylate reductase compare
CSW01_18435 -0.5 -1.4 hypothetical protein compare
CSW01_17585 -0.5 -0.8 periplasmic nitrate reductase electron transfer subunit compare
CSW01_03975 -0.5 -2.3 exodeoxyribonuclease VII large subunit compare
CSW01_14470 -0.5 -2.3 DUF134 domain-containing protein compare
CSW01_09315 -0.5 -1.7 exodeoxyribonuclease III compare
CSW01_17215 -0.5 -2.1 multidrug transporter compare
CSW01_05125 -0.4 -0.8 ribonuclease T compare
CSW01_03025 -0.4 -2.1 hypothetical protein compare
CSW01_00570 -0.4 -1.9 cytochrome c4 compare
CSW01_01965 -0.4 -0.7 glucose-6-phosphate isomerase compare
CSW01_04320 -0.4 -3.2 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_15310 -0.4 -1.3 exoribonuclease R compare
CSW01_15005 -0.4 -1.5 HNH endonuclease compare
CSW01_07215 -0.4 -1.7 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_07200 -0.4 -0.7 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_12005 -0.4 -1.0 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_10270 -0.4 -1.5 cytochrome c-type biogenesis protein CcmE compare
CSW01_01115 -0.4 -3.3 ribonuclease PH compare
CSW01_15460 -0.4 -1.6 type B-5 chloramphenicol O-acetyltransferase CatB9 compare
CSW01_05165 -0.4 -0.9 electron transport complex subunit RsxC compare
CSW01_02270 -0.4 -2.4 malate dehydrogenase compare
CSW01_06015 -0.4 -2.4 NAD-dependent malic enzyme compare
CSW01_15900 -0.4 -2.3 hypothetical protein compare
CSW01_05020 -0.4 -1.6 regulatory protein ToxS compare
CSW01_04335 -0.4 -2.8 RDD family protein compare
CSW01_11755 -0.4 -2.5 murein transglycosylase compare
CSW01_10765 -0.4 -2.2 thioredoxin-dependent thiol peroxidase compare
CSW01_14335 -0.4 -1.9 ATP-dependent helicase compare
CSW01_16290 -0.4 -0.7 DUF1289 domain-containing protein compare
CSW01_11775 -0.4 -3.0 exodeoxyribonuclease V subunit alpha compare
CSW01_11750 -0.4 -1.9 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
CSW01_11585 -0.4 -3.1 esterase FrsA compare
CSW01_13340 -0.4 -3.0 DNA-binding transcriptional regulator OxyR compare
CSW01_07450 -0.4 -1.5 Lon protease family protein compare
CSW01_17385 -0.4 -0.9 antibiotic biosynthesis monooxygenase compare
CSW01_01195 -0.4 -0.6 ADP-heptose--LPS heptosyltransferase I compare
CSW01_19460 -0.4 -1.7 PEGA domain-containing protein compare
CSW01_18630 -0.4 -1.9 6-phosphogluconolactonase compare
CSW01_06825 -0.4 -1.1 acylphosphatase compare
CSW01_18150 -0.4 -0.5 transcription initiation factor TFIIIB compare
CSW01_16435 -0.4 -0.8 DUF3265 domain-containing protein compare
CSW01_06615 -0.4 -0.9 DUF2947 domain-containing protein compare
CSW01_15125 -0.4 -1.7 iron(III) ABC transporter ATP-binding protein compare
CSW01_07125 -0.4 -2.5 sodium:alanine symporter family protein compare
CSW01_19140 -0.4 -1.9 organic hydroperoxide resistance protein compare
CSW01_17595 -0.4 -0.6 TIGR02808 family protein compare
CSW01_03335 -0.4 -1.5 ribosome assembly RNA-binding protein YhbY compare
CSW01_17575 -0.4 -1.6 mycothiol reductase compare
CSW01_01110 -0.4 -2.7 YicC family protein compare
CSW01_13635 -0.4 -2.5 thiol:disulfide interchange protein DsbD compare
CSW01_02085 -0.4 -2.1 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_10545 -0.4 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_aerobic experiments

For lb_0.5%bileacids_aerobic LB_0.5%bileacids across organisms