Experiment set5IT082 for Pantoea sp. MT58

Compare to:

Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -5.2 -2.2 Tol-Pal system protein TolB compare
IAI47_02350 -4.6 -1.0 tRNA-Thr compare
IAI47_16600 -4.5 -1.4 tRNA-OTHER compare
IAI47_13475 -4.3 -2.7 molybdopterin synthase catalytic subunit MoaE compare
IAI47_19945 -4.1 -0.9 hypothetical protein compare
IAI47_00770 -4.1 -0.9 general stress protein compare
IAI47_11515 -4.0 -1.5 hypothetical protein compare
IAI47_17560 -3.9 -1.4 ROK family transcriptional regulator compare
IAI47_06940 -3.8 -0.8 tyrosine-protein kinase Wzc compare
IAI47_21880 -3.8 -0.8 ParA family protein compare
IAI47_01180 -3.7 -1.1 prolyl oligopeptidase family serine peptidase compare
IAI47_07885 -3.7 -1.1 tRNA-Asn compare
IAI47_08085 -3.4 -5.7 helix-turn-helix domain-containing protein compare
IAI47_00930 -3.3 -12.6 DNA-binding transcriptional regulator OxyR compare
IAI47_17900 -3.2 -1.2 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_16390 -3.2 -0.7 tRNA-Leu compare
IAI47_16995 -3.2 -1.5 protein YrbN compare
IAI47_08440 -3.2 -1.5 crossover junction endodeoxyribonuclease RuvC compare
IAI47_12790 -3.1 -0.6 chromosome partition protein MukE compare
IAI47_15995 -3.1 -1.2 leu operon leader peptide compare
IAI47_09580 -3.0 -3.5 FNR family transcription factor compare
IAI47_05070 -3.0 -0.6 outer membrane protein assembly factor BamB compare
IAI47_11475 -3.0 -0.9 hypothetical protein compare
IAI47_07250 -3.0 -3.2 tRNA-Asn compare
IAI47_15600 -2.9 -1.6 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_06900 -2.9 -4.0 phosphatase PAP2 family protein compare
IAI47_18400 -2.9 -1.9 tyrosine recombinase XerC compare
IAI47_21665 -2.9 -1.9 DUF333 domain-containing protein compare
IAI47_00540 -2.8 -2.3 hypothetical protein compare
IAI47_14075 -2.8 -2.1 transcription antiterminator/RNA stability regulator CspE compare
IAI47_06565 -2.7 -1.8 YejL family protein compare
IAI47_00735 -2.7 -1.4 protein-export chaperone SecB compare
IAI47_13740 -2.6 -1.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_13690 -2.6 -0.5 cell envelope integrity protein TolA compare
IAI47_13695 -2.6 -0.5 colicin uptake protein TolR compare
IAI47_00870 -2.5 -0.7 50S ribosomal protein L31 compare
IAI47_01135 -2.5 -0.7 hypothetical protein compare
IAI47_09955 -2.4 -2.6 SDR family oxidoreductase compare
IAI47_18265 -2.4 -1.9 Sec-independent protein translocase subunit TatB compare
IAI47_13155 -2.4 -1.9 H-NS histone family protein compare
IAI47_09360 -2.3 -1.0 peptide ABC transporter ATP-binding protein SapF compare
IAI47_15485 -2.3 -0.8 molecular chaperone Skp compare
IAI47_10835 -2.3 -0.7 tRNA-Val compare
IAI47_03820 -2.3 -3.5 site-specific tyrosine recombinase XerD compare
IAI47_10725 -2.3 -1.8 DUF1656 domain-containing protein compare
IAI47_21450 -2.3 -1.2 general stress protein compare
IAI47_08445 -2.3 -0.8 Holliday junction branch migration protein RuvA compare
IAI47_18145 -2.3 -1.7 elongation factor Tu compare
IAI47_17285 -2.3 -3.0 entericidin A/B family lipoprotein compare
IAI47_05425 -2.2 -3.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_18415 -2.2 -2.2 lipoprotein compare
IAI47_07165 -2.1 -1.2 exodeoxyribonuclease I compare
IAI47_11625 -2.1 -2.1 DUF1311 domain-containing protein compare
IAI47_08450 -2.0 -3.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_00780 -2.0 -3.8 6-phosphofructokinase compare
IAI47_04120 -2.0 -11.2 GTP diphosphokinase compare
IAI47_00940 -2.0 -5.8 HTH-type transcriptional repressor FabR compare
IAI47_06325 -1.9 -5.2 acetate kinase compare
IAI47_17120 -1.9 -2.5 BolA family iron metabolism protein IbaG compare
IAI47_17205 -1.9 -1.2 PTS phosphocarrier protein NPr compare
IAI47_19045 -1.9 -2.7 two-component-system connector protein YcgZ compare
IAI47_11760 -1.9 -0.9 TonB-dependent siderophore receptor compare
IAI47_17645 -1.9 -2.0 hypothetical protein compare
IAI47_02655 -1.9 -3.7 hypothetical protein compare
IAI47_21830 -1.9 -1.7 hypothetical protein compare
IAI47_13700 -1.9 -2.6 Tol-Pal system protein TolQ compare
IAI47_12570 -1.9 -0.8 tRNA-Ser compare
IAI47_05195 -1.8 -2.0 DnaA inactivator Hda compare
IAI47_18830 -1.8 -0.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_06320 -1.8 -6.5 phosphate acetyltransferase compare
IAI47_03375 -1.8 -7.9 peptide chain release factor 3 compare
IAI47_00500 -1.8 -9.0 ATP-dependent DNA helicase RecG compare
IAI47_04300 -1.8 -6.2 recombinase RecA compare
IAI47_20595 -1.8 -2.7 GhoT/OrtT family toxin compare
IAI47_02380 -1.7 -1.2 DNA-binding transcriptional regulator Fis compare
IAI47_16190 -1.7 -4.1 molybdopterin adenylyltransferase compare
IAI47_06120 -1.7 -2.9 YfcZ/YiiS family protein compare
IAI47_13180 -1.7 -5.7 manganese-binding transcriptional regulator MntR compare
IAI47_03570 -1.7 -2.5 YggL family protein compare
IAI47_03610 -1.7 -3.0 YqgE/AlgH family protein compare
IAI47_11360 -1.7 -2.0 hypothetical protein compare
IAI47_17235 -1.6 -5.6 stringent starvation protein A compare
IAI47_03680 -1.6 -8.5 transketolase compare
IAI47_05490 -1.6 -3.1 tRNA-Val compare
IAI47_20550 -1.6 -2.9 ABC transporter permease compare
IAI47_21600 -1.6 -1.8 EamA family transporter compare
IAI47_20780 -1.6 -3.0 cupin domain-containing protein compare
IAI47_00300 -1.6 -0.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_19890 -1.6 -1.6 hypothetical protein compare
IAI47_09055 -1.6 -7.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_10320 -1.6 -0.6 Rrf2 family transcriptional regulator compare
IAI47_13950 -1.6 -0.6 PhoH family protein compare
IAI47_01820 -1.6 -5.8 two-component system response regulator OmpR compare
IAI47_07020 -1.6 -1.1 hypothetical protein compare
IAI47_14730 -1.5 -0.7 exodeoxyribonuclease VII small subunit compare
IAI47_09265 -1.5 -2.1 LapA family protein compare
IAI47_20440 -1.5 -3.4 SDR family oxidoreductase compare
IAI47_12110 -1.5 -2.4 ribonuclease E compare
IAI47_13145 -1.5 -5.1 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_12300 -1.5 -1.5 hypothetical protein compare
IAI47_18215 -1.5 -1.0 Trk system potassium transporter TrkH compare
IAI47_09305 -1.5 -2.4 cyclic di-GMP phosphodiesterase compare
IAI47_19325 -1.5 -2.3 transposase compare
IAI47_12885 -1.5 -5.7 pyruvate formate lyase 1-activating protein compare
IAI47_20005 -1.5 -2.0 PTS sugar transporter subunit IIA compare
IAI47_08010 -1.5 -4.6 flagella biosynthesis chaperone FliJ compare
IAI47_04425 -1.5 -5.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_06135 -1.5 -2.5 phosphohistidine phosphatase SixA compare
IAI47_04870 -1.5 -4.7 elongation factor 4 compare
IAI47_16195 -1.5 -5.7 transaldolase compare
IAI47_13495 -1.4 -4.4 GTP 3',8-cyclase MoaA compare
IAI47_15540 -1.4 -6.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_15595 -1.4 -1.4 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_08590 -1.4 -1.9 hypothetical protein compare
IAI47_05200 -1.4 -3.0 arsenate reductase (glutaredoxin) compare
IAI47_12120 -1.4 -6.8 flagellar hook-associated protein FlgK compare
IAI47_07375 -1.4 -3.6 ABC transporter permease compare
IAI47_08045 -1.4 -1.6 NUDIX domain-containing protein compare
IAI47_10790 -1.4 -2.5 YnhF family membrane protein compare
IAI47_02090 -1.4 -2.7 elongation factor Tu compare
IAI47_07475 -1.3 -0.7 hypothetical protein compare
IAI47_19080 -1.3 -1.7 hypothetical protein compare
IAI47_13545 -1.3 -5.1 6-phosphogluconolactonase compare
IAI47_20705 -1.3 -0.7 sulfur carrier protein ThiS compare
IAI47_15255 -1.3 -3.5 amino acid ABC transporter ATP-binding protein compare
IAI47_07490 -1.3 -1.5 DNA-binding protein compare
IAI47_13890 -1.3 -3.6 ROK family transcriptional regulator compare
IAI47_14555 -1.3 -2.6 hemolysin expression modulator Hha compare
IAI47_12880 -1.3 -8.3 formate C-acetyltransferase compare
IAI47_09855 -1.3 -2.3 DUF2384 domain-containing protein compare
IAI47_04270 -1.2 -3.7 respiratory nitrate reductase subunit gamma compare
IAI47_11425 -1.2 -2.9 hypothetical protein compare
IAI47_01170 -1.2 -2.9 fluoride efflux transporter CrcB compare
IAI47_11310 -1.2 -2.4 redox-regulated ATPase YchF compare
IAI47_03615 -1.2 -4.6 glutathione synthase compare
IAI47_10430 -1.2 -1.0 hypothetical protein compare
IAI47_05525 -1.2 -0.8 tRNA-Ala compare
IAI47_12355 -1.2 -1.5 hydroxymyristoyl-ACP dehydratase compare
IAI47_20905 -1.2 -1.9 PTS transporter subunit EIIB compare
IAI47_00060 -1.2 -3.6 YceK/YidQ family lipoprotein compare
IAI47_10565 -1.2 -0.8 DUF4113 domain-containing protein compare
IAI47_06170 -1.2 -2.2 YfcL family protein compare
IAI47_16490 -1.1 -2.2 PTS sugar transporter subunit IIA compare
IAI47_09210 -1.1 -3.8 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_10840 -1.1 -2.8 pyruvate kinase PykF compare
IAI47_08430 -1.1 -1.8 dihydroneopterin triphosphate diphosphatase compare
IAI47_19940 -1.1 -1.5 hypothetical protein compare
IAI47_13490 -1.1 -4.1 molybdenum cofactor biosynthesis protein B compare
IAI47_20540 -1.1 -2.6 TetR/AcrR family transcriptional regulator compare
IAI47_18055 -1.1 -2.8 DNA-binding protein HU-alpha compare
IAI47_08670 -1.1 -1.6 DUF1272 domain-containing protein compare
IAI47_03550 -1.1 -4.6 membrane-bound lytic murein transglycosylase MltC compare
IAI47_13480 -1.1 -1.8 molybdopterin synthase sulfur carrier subunit compare
IAI47_09480 -1.1 -1.5 hypothetical protein compare
IAI47_21275 -1.1 -2.6 ABC transporter permease subunit compare
IAI47_05050 -1.1 -3.0 cytoskeleton protein RodZ compare
IAI47_07390 -1.1 -2.0 creatininase family protein compare
IAI47_18770 -1.1 -1.0 type I addiction module toxin, SymE family compare
IAI47_13745 -1.1 -1.9 2-oxoglutarate dehydrogenase E1 component compare
IAI47_03905 -1.1 -4.3 TerC family protein compare
IAI47_13840 -1.1 -2.1 replication initiation negative regulator SeqA compare
IAI47_00375 -1.1 -6.6 ribose operon transcriptional repressor RbsR compare
IAI47_03670 -1.1 -2.5 DUF937 domain-containing protein compare
IAI47_00460 -1.0 -0.6 glutamate--ammonia ligase compare
IAI47_00505 -1.0 -3.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_03135 -1.0 -3.2 outer membrane channel protein TolC compare
IAI47_05400 -1.0 -3.5 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_09990 -1.0 -3.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
IAI47_00730 -1.0 -1.6 glutaredoxin 3 compare
IAI47_13775 -1.0 -3.0 endonuclease VIII compare
IAI47_12155 -1.0 -4.0 flagellar hook assembly protein FlgD compare
IAI47_03665 -1.0 -3.2 agmatinase compare
IAI47_07285 -1.0 -2.6 hypothetical protein compare
IAI47_02585 -1.0 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_18345 -1.0 -3.2 homoserine/homoserine lactone efflux protein compare
IAI47_21235 -1.0 -0.9 hypothetical protein compare
IAI47_08605 -1.0 -1.9 hypothetical protein compare
IAI47_00410 -1.0 -4.6 molybdenum cofactor guanylyltransferase MobA compare
IAI47_16420 -1.0 -4.7 LacI family DNA-binding transcriptional regulator compare
IAI47_18405 -1.0 -3.1 DUF484 domain-containing protein compare
IAI47_08845 -1.0 -0.9 cell division topological specificity factor MinE compare
IAI47_13140 -1.0 -3.2 molybdopterin molybdotransferase MoeA compare
IAI47_10100 -1.0 -1.6 ABC transporter ATP-binding protein compare
IAI47_14930 -1.0 -1.6 shikimate kinase AroL compare
IAI47_15115 -1.0 -4.3 glutamate-5-semialdehyde dehydrogenase compare
IAI47_11930 -1.0 -2.7 two-component system response regulator PhoP compare
IAI47_18755 -1.0 -2.7 glutathione S-transferase compare
IAI47_16840 -1.0 -2.8 carbamate kinase compare
IAI47_21765 -1.0 -1.0 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_11395 -1.0 -3.0 hypothetical protein compare
IAI47_00225 -1.0 -3.7 phosphate ABC transporter permease PstA compare
IAI47_14945 -1.0 -1.6 pyrroline-5-carboxylate reductase compare
IAI47_04835 -1.0 -3.7 ATP-dependent RNA helicase SrmB compare
IAI47_02605 -1.0 -3.7 protease modulator HflC compare
IAI47_14080 -1.0 -2.3 hypothetical protein compare
IAI47_05325 -0.9 -1.1 DUF1471 domain-containing protein compare
IAI47_09945 -0.9 -1.9 hydroxyisourate hydrolase compare
IAI47_03000 -0.9 -3.0 tail fiber assembly protein compare
IAI47_06510 -0.9 -3.8 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI47_19225 -0.9 -2.8 PTS sugar transporter subunit IIB compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms