Culturing: rhodanobacter_10B01_ML12, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 30 (C), shaken=200 rpm
| Pathway | #Steps | #Present | #Specific |
|---|
| siroheme biosynthesis | 4 | 4 | 4 |
| acetate and ATP formation from acetyl-CoA III | 1 | 1 | 1 |
| fatty acid β-oxidation III (unsaturated, odd number) | 1 | 1 | 1 |
| acetate conversion to acetyl-CoA | 1 | 1 | 1 |
| assimilatory sulfate reduction III | 3 | 3 | 2 |
| ethanol degradation IV | 3 | 3 | 2 |
| ethanol degradation II | 3 | 3 | 2 |
| benzoyl-CoA biosynthesis | 3 | 3 | 2 |
| ethanol degradation III | 3 | 2 | 2 |
| assimilatory sulfate reduction I | 4 | 4 | 2 |
| glycolate and glyoxylate degradation II | 2 | 2 | 1 |
| chitin deacetylation | 4 | 2 | 2 |
| ethylene glycol degradation | 2 | 1 | 1 |
| putrescine degradation I | 2 | 1 | 1 |
| putrescine degradation V | 2 | 1 | 1 |
| oleate β-oxidation (thioesterase-dependent, yeast) | 2 | 1 | 1 |
| oleate β-oxidation | 35 | 32 | 16 |
| fatty acid β-oxidation I (generic) | 7 | 6 | 3 |
| factor 430 biosynthesis | 7 | 3 | 3 |
| adipate degradation | 5 | 5 | 2 |
| adipate biosynthesis | 5 | 4 | 2 |
| fatty acid β-oxidation II (plant peroxisome) | 5 | 3 | 2 |
| glutaryl-CoA degradation | 5 | 3 | 2 |
| fatty acid β-oxidation IV (unsaturated, even number) | 5 | 3 | 2 |
| fatty acid β-oxidation V (unsaturated, odd number, di-isomerase-dependent) | 5 | 2 | 2 |
| pyruvate fermentation to hexanol (engineered) | 11 | 7 | 4 |
| (8E,10E)-dodeca-8,10-dienol biosynthesis | 11 | 5 | 4 |
| 2-methyl-branched fatty acid β-oxidation | 14 | 9 | 5 |
| glyoxylate cycle | 6 | 6 | 2 |
| superpathway of acetate utilization and formation | 3 | 3 | 1 |
| fatty acid salvage | 6 | 5 | 2 |
| pyruvate fermentation to butanol II (engineered) | 6 | 4 | 2 |
| L-isoleucine degradation I | 6 | 4 | 2 |
| putrescine degradation IV | 3 | 2 | 1 |
| L-isoleucine biosynthesis V | 3 | 2 | 1 |
| hypotaurine degradation | 3 | 2 | 1 |
| valproate β-oxidation | 9 | 5 | 3 |
| propanoate fermentation to 2-methylbutanoate | 6 | 3 | 2 |
| methyl ketone biosynthesis (engineered) | 6 | 3 | 2 |
| histamine degradation | 3 | 1 | 1 |
| oleate β-oxidation (reductase-dependent, yeast) | 3 | 1 | 1 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 11 | 4 |
| superpathway of glycol metabolism and degradation | 7 | 4 | 2 |
| fatty acid β-oxidation VI (mammalian peroxisome) | 7 | 3 | 2 |
| benzoyl-CoA degradation I (aerobic) | 7 | 3 | 2 |
| pyruvate fermentation to butanoate | 7 | 3 | 2 |
| assimilatory sulfate reduction IV | 4 | 3 | 1 |
| phytol degradation | 4 | 3 | 1 |
| fatty acid α-oxidation I (plants) | 4 | 2 | 1 |
| pyruvate fermentation to butanol I | 8 | 3 | 2 |
| L-valine degradation I | 8 | 3 | 2 |
| oleate β-oxidation (isomerase-dependent, yeast) | 4 | 1 | 1 |
| D-arabinose degradation II | 4 | 1 | 1 |
| L-tryptophan degradation X (mammalian, via tryptamine) | 4 | 1 | 1 |
| putrescine degradation III | 4 | 1 | 1 |
| 4-methylphenol degradation to protocatechuate | 4 | 1 | 1 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 8 | 2 |
| superpathway of Clostridium acetobutylicum acidogenic fermentation | 9 | 5 | 2 |
| phenylacetate degradation I (aerobic) | 9 | 3 | 2 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 9 | 3 | 2 |
| superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) | 10 | 8 | 2 |
| 2-methylcitrate cycle I | 5 | 4 | 1 |
| L-glutamate degradation V (via hydroxyglutarate) | 10 | 6 | 2 |
| (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered) | 5 | 3 | 1 |
| 3-phenylpropanoate degradation | 10 | 5 | 2 |
| sphingosine and sphingosine-1-phosphate metabolism | 10 | 4 | 2 |
| 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast) | 10 | 4 | 2 |
| octane oxidation | 5 | 2 | 1 |
| mitochondrial NADPH production (yeast) | 5 | 2 | 1 |
| 4-hydroxybenzoate biosynthesis III (plants) | 5 | 2 | 1 |
| cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) | 15 | 3 | 3 |
| dopamine degradation | 5 | 1 | 1 |
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 5 | 1 | 1 |
| superpathway of phenylethylamine degradation | 11 | 3 | 2 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 11 | 2 |
| superpathway of glyoxylate bypass and TCA | 12 | 10 | 2 |
| L-isoleucine biosynthesis IV | 6 | 4 | 1 |
| 3-methyl-branched fatty acid α-oxidation | 6 | 3 | 1 |
| 2-methylcitrate cycle II | 6 | 3 | 1 |
| L-glutamate degradation VII (to butanoate) | 12 | 4 | 2 |
| 6-gingerol analog biosynthesis (engineered) | 6 | 2 | 1 |
| superpathway of bitter acids biosynthesis | 18 | 3 | 3 |
| adlupulone and adhumulone biosynthesis | 6 | 1 | 1 |
| β-alanine biosynthesis II | 6 | 1 | 1 |
| alkane oxidation | 6 | 1 | 1 |
| colupulone and cohumulone biosynthesis | 6 | 1 | 1 |
| lupulone and humulone biosynthesis | 6 | 1 | 1 |
| 4-hydroxymandelate degradation | 6 | 1 | 1 |
| noradrenaline and adrenaline degradation | 13 | 4 | 2 |
| superpathway of Clostridium acetobutylicum solventogenic fermentation | 13 | 4 | 2 |
| cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) | 13 | 2 | 2 |
| serotonin degradation | 7 | 3 | 1 |
| ceramide degradation by α-oxidation | 7 | 2 | 1 |
| 2,4-xylenol degradation to protocatechuate | 7 | 1 | 1 |
| D-xylose degradation IV | 7 | 1 | 1 |
| limonene degradation IV (anaerobic) | 7 | 1 | 1 |
| Spodoptera littoralis pheromone biosynthesis | 22 | 3 | 3 |
| L-tryptophan degradation III (eukaryotic) | 15 | 11 | 2 |
| glycerol degradation to butanol | 16 | 9 | 2 |
| superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) | 8 | 4 | 1 |
| ceramide and sphingolipid recycling and degradation (yeast) | 16 | 4 | 2 |
| 2-methylpropene degradation | 8 | 2 | 1 |
| superpathway of ornithine degradation | 8 | 2 | 1 |
| L-arabinose degradation IV | 8 | 2 | 1 |
| crotonate fermentation (to acetate and cyclohexane carboxylate) | 16 | 3 | 2 |
| aromatic biogenic amine degradation (bacteria) | 8 | 1 | 1 |
| superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation | 17 | 6 | 2 |
| benzoate fermentation (to acetate and cyclohexane carboxylate) | 17 | 3 | 2 |
| superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass | 26 | 23 | 3 |
| 3-hydroxypropanoate/4-hydroxybutanate cycle | 18 | 10 | 2 |
| reductive glycine pathway of autotrophic CO2 fixation | 9 | 5 | 1 |
| Entner-Doudoroff pathway II (non-phosphorylative) | 9 | 4 | 1 |
| cis-geranyl-CoA degradation | 9 | 2 | 1 |
| toluene degradation VI (anaerobic) | 18 | 3 | 2 |
| glycolysis V (Pyrococcus) | 10 | 7 | 1 |
| superpathway of coenzyme A biosynthesis II (plants) | 10 | 5 | 1 |
| methyl tert-butyl ether degradation | 10 | 3 | 1 |
| glycolysis II (from fructose 6-phosphate) | 11 | 11 | 1 |
| toluene degradation III (aerobic) (via p-cresol) | 11 | 5 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 3 | 1 |
| gallate degradation III (anaerobic) | 11 | 3 | 1 |
| adenosylcobalamin biosynthesis I (anaerobic) | 36 | 12 | 3 |
| 10-cis-heptadecenoyl-CoA degradation (yeast) | 12 | 2 | 1 |
| 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast) | 12 | 2 | 1 |
| androstenedione degradation I (aerobic) | 25 | 8 | 2 |
| glycolysis I (from glucose 6-phosphate) | 13 | 12 | 1 |
| gluconeogenesis I | 13 | 11 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 4 | 1 |
| platensimycin biosynthesis | 26 | 6 | 2 |
| (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase) | 13 | 2 | 1 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 18 | 2 |
| androstenedione degradation II (anaerobic) | 27 | 6 | 2 |
| superpathway of testosterone and androsterone degradation | 28 | 8 | 2 |
| superpathway of cholesterol degradation I (cholesterol oxidase) | 42 | 10 | 3 |
| crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered) | 14 | 2 | 1 |
| docosahexaenoate biosynthesis III (6-desaturase, mammals) | 14 | 2 | 1 |
| superpathway of cholesterol degradation II (cholesterol dehydrogenase) | 47 | 10 | 3 |
| adenosylcobalamin biosynthesis II (aerobic) | 33 | 12 | 2 |
| superpathway of glycolysis and the Entner-Doudoroff pathway | 17 | 16 | 1 |
| cholesterol degradation to androstenedione I (cholesterol oxidase) | 17 | 2 | 1 |
| superpathway of hexitol degradation (bacteria) | 18 | 14 | 1 |
| gluconeogenesis II (Methanobacterium thermoautotrophicum) | 18 | 8 | 1 |
| superpathway of anaerobic sucrose degradation | 19 | 16 | 1 |
| hexitol fermentation to lactate, formate, ethanol and acetate | 19 | 14 | 1 |
| superpathway of pentose and pentitol degradation | 42 | 4 | 2 |
| superpathway of N-acetylneuraminate degradation | 22 | 16 | 1 |
| cholesterol degradation to androstenedione II (cholesterol dehydrogenase) | 22 | 2 | 1 |
| superpathway of cholesterol degradation III (oxidase) | 49 | 6 | 2 |
| photosynthetic 3-hydroxybutanoate biosynthesis (engineered) | 26 | 17 | 1 |
| superpathway of aerobic toluene degradation | 30 | 7 | 1 |
| superpathway of aromatic compound degradation via 3-oxoadipate | 35 | 11 | 1 |
| superpathway of aromatic compound degradation via 2-hydroxypentadienoate | 42 | 8 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 25 | 1 |