Experiment set5IT081 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Aerobic_180MIN_ZN14B

200 most important genes:

  gene name fitness t score description  
CSW01_11535 -4.1 -5.5 thiamine-phosphate kinase compare
CSW01_02890 -2.6 -12.5 aspartate kinase compare
CSW01_01300 -2.4 -4.8 sugar ABC transporter compare
CSW01_05575 -2.2 -4.7 phosphate acetyltransferase compare
CSW01_04650 -2.2 -2.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_10190 -2.2 -6.7 nucleoid-associated protein compare
CSW01_02875 -2.2 -7.9 DNA recombination/repair protein RecA compare
CSW01_01295 -2.2 -2.0 ABC transporter permease compare
CSW01_18350 -2.1 -1.4 cell division protein DedD compare
CSW01_13805 -2.1 -4.2 Hsp33 family molecular chaperone HslO compare
CSW01_13420 -2.0 -3.5 elongation factor P--(R)-beta-lysine ligase compare
CSW01_04935 -1.6 -1.7 phosphocarrier protein HPr compare
CSW01_03985 -1.5 -3.8 GMP synthase (glutamine-hydrolyzing) compare
CSW01_12320 -1.5 -1.8 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_03155 -1.4 -7.1 RNA polymerase-binding transcription factor DksA compare
CSW01_00560 -1.4 -2.4 DNA polymerase I compare
CSW01_12250 -1.4 -5.8 site-specific tyrosine recombinase XerD compare
CSW01_09240 -1.3 -4.0 Holliday junction branch migration DNA helicase RuvB compare
CSW01_17780 -1.3 -2.9 hypothetical protein compare
CSW01_00650 -1.3 -6.2 tyrosine recombinase XerC compare
CSW01_09525 -1.3 -0.8 DNA translocase FtsK compare
CSW01_09245 -1.3 -4.3 Holliday junction branch migration protein RuvA compare
CSW01_02970 -1.2 -5.7 glutamate--cysteine ligase compare
CSW01_14680 -1.2 -1.9 aminotransferase compare
CSW01_03870 -1.2 -1.6 inositol monophosphatase compare
CSW01_06585 -1.2 -3.5 fumarate hydratase compare
CSW01_13285 -1.2 -2.5 ribulose-phosphate 3-epimerase compare
CSW01_09420 -1.2 -1.8 DUF2062 domain-containing protein compare
CSW01_04375 -1.2 -3.4 SsrA-binding protein compare
CSW01_01265 -1.1 -2.5 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_03785 -1.1 -2.5 phosphate ABC transporter permease compare
CSW01_13300 -1.1 -5.2 3-dehydroquinate synthase compare
CSW01_14055 -1.0 -2.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_07920 -1.0 -1.6 lipid A modification system glycine carrier protein AlmF compare
CSW01_10710 -1.0 -6.2 deferrochelatase compare
CSW01_10445 -1.0 -2.0 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_17855 -1.0 -6.7 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_00450 -1.0 -1.8 SCP2 domain-containing protein compare
CSW01_13450 -0.9 -1.8 EF-P beta-lysylation protein EpmB compare
CSW01_01490 -0.9 -2.5 Fis family transcriptional regulator compare
CSW01_01015 -0.9 -6.7 DNA helicase II compare
CSW01_07210 -0.9 -2.4 hypothetical protein compare
CSW01_19395 -0.9 -1.3 histidine kinase compare
CSW01_05195 -0.9 -3.6 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_12815 -0.9 -5.3 RNA polymerase sigma-54 factor compare
CSW01_07145 -0.9 -3.2 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_08625 -0.9 -4.0 chromosome partition protein MukE compare
CSW01_08630 -0.9 -3.9 condensin subunit F compare
CSW01_11785 -0.9 -0.8 exonuclease V subunit gamma compare
CSW01_13340 -0.9 -5.9 DNA-binding transcriptional regulator OxyR compare
CSW01_10875 -0.9 -2.7 redox-regulated ATPase YchF compare
CSW01_05265 -0.8 -1.4 methionine--tRNA ligase compare
CSW01_01800 -0.8 -1.7 tRNA-Met compare
CSW01_11690 -0.8 -5.2 hypothetical protein compare
CSW01_13305 -0.8 -1.1 shikimate kinase compare
CSW01_03475 -0.8 -2.5 ATP-dependent RNA helicase SrmB compare
CSW01_00465 -0.8 -2.9 twin-arginine translocase subunit TatB compare
CSW01_07200 -0.8 -1.1 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_15680 -0.7 -1.8 DUF3265 domain-containing protein compare
CSW01_16785 -0.7 -2.2 hypothetical protein compare
CSW01_09560 -0.7 -3.1 orotidine-5'-phosphate decarboxylase compare
CSW01_03050 -0.7 -3.0 cytochrome b compare
CSW01_03950 -0.7 -1.8 hypothetical protein compare
CSW01_07215 -0.7 -1.9 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_08620 -0.7 -4.9 chromosome partition protein MukB compare
CSW01_03055 -0.7 -2.4 cytochrome c1 compare
CSW01_05020 -0.7 -2.8 regulatory protein ToxS compare
CSW01_09250 -0.7 -0.8 crossover junction endodeoxyribonuclease RuvC compare
CSW01_17370 -0.7 -2.1 hypothetical protein compare
CSW01_03790 -0.7 -1.7 phosphate ABC transporter, permease protein PstA compare
CSW01_05815 -0.7 -1.1 glutaredoxin compare
CSW01_16435 -0.7 -1.3 DUF3265 domain-containing protein compare
CSW01_05580 -0.7 -3.1 acetate kinase compare
CSW01_06435 -0.7 -2.6 C4-dicarboxylate ABC transporter compare
CSW01_08990 -0.7 -2.6 glyoxalase compare
CSW01_12005 -0.7 -1.0 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_04850 -0.7 -2.3 septal ring lytic transglycosylase RlpA compare
CSW01_11415 -0.7 -2.6 phenolic acid decarboxylase compare
CSW01_15030 -0.7 -2.5 hypothetical protein compare
CSW01_03330 -0.7 -2.8 transcription elongation factor GreA compare
CSW01_07230 -0.7 -3.2 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_02490 -0.7 -3.3 glutathione synthetase compare
CSW01_05370 -0.7 -1.2 YbaB/EbfC family nucleoid-associated protein compare
CSW01_09315 -0.6 -2.6 exodeoxyribonuclease III compare
CSW01_12255 -0.6 -2.0 flavodoxin FldB compare
CSW01_00065 -0.6 -3.9 DNA replication and repair protein RecF compare
CSW01_12365 -0.6 -1.5 inorganic phosphate transporter compare
CSW01_16195 -0.6 -1.0 DUF645 domain-containing protein compare
CSW01_04820 -0.6 -3.9 serine hydroxymethyltransferase compare
CSW01_05900 -0.6 -1.5 carboxy-S-adenosyl-L-methionine synthase CmoA compare
CSW01_08435 -0.6 -2.1 phage shock protein PspA compare
CSW01_01120 -0.6 -4.9 orotate phosphoribosyltransferase compare
CSW01_03410 -0.6 -1.1 polyribonucleotide nucleotidyltransferase compare
CSW01_00615 -0.6 -1.5 hypothetical protein compare
CSW01_14085 -0.6 -1.0 transcriptional regulator compare
CSW01_08450 -0.6 -1.2 antimicrobial peptide ABC transporter permease SapB compare
CSW01_11775 -0.6 -4.2 exodeoxyribonuclease V subunit alpha compare
CSW01_07450 -0.6 -3.1 Lon protease family protein compare
CSW01_03980 -0.6 -3.4 IMP dehydrogenase compare
CSW01_15115 -0.6 -2.4 iron(III) ABC transporter permease compare
CSW01_09620 -0.6 -1.1 trigger factor compare
CSW01_13670 -0.6 -1.3 DNA-directed RNA polymerase subunit omega compare
CSW01_15560 -0.6 -1.3 lipocalin compare
CSW01_08240 -0.6 -1.4 ATP-binding protein compare
CSW01_16590 -0.6 -1.0 N-acetyltransferase compare
CSW01_10440 -0.6 -1.4 succinate dehydrogenase flavoprotein subunit compare
CSW01_15120 -0.6 -2.0 iron(III) ABC transporter permease compare
CSW01_10400 -0.6 -2.7 zinc ABC transporter substrate-binding protein compare
CSW01_08565 -0.6 -1.1 hypothetical protein compare
CSW01_16325 -0.6 -1.0 hypothetical protein compare
CSW01_01245 -0.5 -2.0 lipopolysaccharide heptosyltransferase II compare
CSW01_11670 -0.5 -0.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_06970 -0.5 -1.4 DUF2256 domain-containing protein compare
CSW01_07225 -0.5 -2.0 cytochrome-c oxidase, cbb3-type subunit II compare
CSW01_05375 -0.5 -3.3 recombination protein RecR compare
CSW01_00460 -0.5 -1.7 twin-arginine translocase subunit TatA compare
CSW01_01045 -0.5 -4.1 DNA helicase RecQ compare
CSW01_11115 -0.5 -2.3 hypothetical protein compare
CSW01_13395 -0.5 -3.4 PadR family transcriptional regulator compare
CSW01_18760 -0.5 -3.4 dihydroorotase compare
CSW01_01515 -0.5 -1.1 type II 3-dehydroquinate dehydratase compare
CSW01_15870 -0.5 -1.1 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_11410 -0.5 -0.8 nitrogen regulatory protein P-II compare
CSW01_04845 -0.5 -1.9 D-alanyl-D-alanine carboxypeptidase compare
CSW01_03975 -0.5 -2.1 exodeoxyribonuclease VII large subunit compare
CSW01_17090 -0.5 -3.4 SPOR domain-containing protein compare
CSW01_06825 -0.5 -1.4 acylphosphatase compare
CSW01_10290 -0.5 -2.4 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_12680 -0.5 -3.1 cytosol aminopeptidase compare
CSW01_02205 -0.5 -3.4 ribonuclease E/G compare
CSW01_01190 -0.5 -2.6 glycosyltransferase family 2 protein compare
CSW01_10285 -0.5 -1.7 heme exporter protein CcmB compare
CSW01_13620 -0.5 -4.0 aspartate ammonia-lyase compare
CSW01_14910 -0.5 -1.2 cold-shock protein compare
CSW01_05240 -0.5 -1.6 CBS domain-containing protein compare
CSW01_14245 -0.5 -1.7 hypothetical protein compare
CSW01_10750 -0.5 -1.7 outer membrane protein assembly factor BamC compare
CSW01_03045 -0.5 -1.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_04315 -0.5 -2.0 TCP pilus virulence regulatory protein compare
CSW01_06030 -0.5 -1.6 helicase compare
CSW01_17575 -0.5 -2.8 mycothiol reductase compare
CSW01_12360 -0.5 -1.9 TIGR00153 family protein compare
CSW01_09660 -0.5 -1.0 hypothetical protein compare
CSW01_10545 -0.5 -2.4 hypothetical protein compare
CSW01_02450 -0.5 -3.2 pyrroline-5-carboxylate reductase compare
CSW01_14455 -0.5 -1.1 hypothetical protein compare
CSW01_19130 -0.5 -2.4 FAA hydrolase family protein compare
CSW01_11700 -0.5 -1.4 hypothetical protein compare
CSW01_11565 -0.5 -1.4 transcriptional regulator NrdR compare
CSW01_11290 -0.5 -2.7 hypothetical protein compare
CSW01_11915 -0.5 -1.4 hypothetical protein compare
CSW01_07160 -0.4 -2.0 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_10485 -0.4 -0.8 DUF2788 domain-containing protein compare
CSW01_06565 -0.4 -3.1 L-serine ammonia-lyase compare
CSW01_17510 -0.4 -1.1 peptidylprolyl isomerase compare
CSW01_02315 -0.4 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_06920 -0.4 -1.4 DUF2760 domain-containing protein compare
CSW01_17495 -0.4 -2.4 glycerol-3-phosphate dehydrogenase compare
CSW01_09475 -0.4 -2.4 thiamine kinase compare
CSW01_14125 -0.4 -2.0 1,4-alpha-glucan branching enzyme compare
CSW01_12340 -0.4 -0.3 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase compare
CSW01_04585 -0.4 -2.1 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_14325 -0.4 -2.7 peptidase compare
CSW01_15125 -0.4 -1.8 iron(III) ABC transporter ATP-binding protein compare
CSW01_07460 -0.4 -0.8 ribosome modulation factor compare
CSW01_04285 -0.4 -1.3 toxin coregulated pilus biosynthesis protein R compare
CSW01_07915 -0.4 -1.5 glycine--lipid A transferase AlmG compare
CSW01_00620 -0.4 -2.3 class I adenylate cyclase compare
CSW01_19545 -0.4 -2.5 chemotaxis protein CheW compare
CSW01_14225 -0.4 -2.2 phosphatidylglycerophosphatase B compare
CSW01_14335 -0.4 -1.4 ATP-dependent helicase compare
CSW01_19345 -0.4 -1.2 YccF domain-containing protein compare
CSW01_14965 -0.4 -1.4 hypothetical protein compare
CSW01_15005 -0.4 -1.6 HNH endonuclease compare
CSW01_03915 -0.4 -1.0 Fe-S assembly protein IscX compare
CSW01_11870 -0.4 -2.8 DNA repair protein RadA compare
CSW01_19435 -0.4 -0.7 hypothetical protein compare
CSW01_17030 -0.4 -1.5 competence protein ComFB compare
CSW01_00280 -0.4 -2.7 shikimate dehydrogenase compare
CSW01_09520 -0.4 -0.9 disulfide bond formation protein B compare
CSW01_11240 -0.4 -1.8 flagella basal body P-ring formation protein FlgA compare
CSW01_10130 -0.4 -2.1 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
CSW01_08535 -0.4 -1.0 TIGR02647 family protein compare
CSW01_13410 -0.4 -1.9 protein-export protein SecB compare
CSW01_19140 -0.4 -2.5 organic hydroperoxide resistance protein compare
CSW01_04195 -0.4 -2.5 class I SAM-dependent methyltransferase compare
CSW01_10330 -0.4 -2.2 chemotaxis protein CheY compare
CSW01_14815 -0.4 -1.0 hypothetical protein compare
CSW01_08545 -0.4 -1.4 YdcF family protein compare
CSW01_11780 -0.4 -0.6 exodeoxyribonuclease V subunit beta compare
CSW01_12240 -0.4 -2.8 single-stranded-DNA-specific exonuclease RecJ compare
CSW01_00900 -0.4 -0.8 hypothetical protein compare
CSW01_15810 -0.4 -0.8 hypothetical protein compare
CSW01_18630 -0.4 -1.8 6-phosphogluconolactonase compare
CSW01_12445 -0.4 -2.4 DNA repair protein RecO compare
CSW01_04320 -0.4 -2.6 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_19600 -0.4 -2.3 hypothetical protein compare
CSW01_06410 -0.4 -1.0 hypothetical protein compare
CSW01_10420 -0.4 -1.8 succinyl-CoA ligase subunit beta compare
CSW01_08195 -0.4 -1.4 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_aerobic experiments

For lb_aerobic LB across organisms