Experiment set5IT080 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with sodium iodate 0.005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2397 -4.8 -3.3 Two-component system response regulator QseB compare
Pf6N2E2_3834 -4.3 -6.6 Lipoprotein NlpD compare
Pf6N2E2_2675 -4.0 -1.7 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5150 -4.0 -3.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1116 -4.0 -2.7 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4077 -4.0 -2.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_40 -3.8 -5.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4059 -3.8 -1.6 DNA-binding protein HU-alpha compare
Pf6N2E2_5527 -3.7 -2.5 Cold shock protein CspC compare
Pf6N2E2_3300 -3.6 -4.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5219 -3.6 -8.3 FIG140336: TPR domain protein compare
Pf6N2E2_3095 -3.6 -1.5 hypothetical protein compare
Pf6N2E2_4612 -3.5 -4.8 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5069 -3.5 -5.3 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5068 -3.5 -11.5 putative Cytochrome bd2, subunit I compare
Pf6N2E2_234 -3.5 -3.9 FIG00454312: hypothetical protein compare
Pf6N2E2_3252 -3.4 -6.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3908 -3.3 -3.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2127 -3.2 -5.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_579 -3.2 -1.9 FIG00962753: hypothetical protein compare
Pf6N2E2_2218 -3.2 -3.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_760 -3.2 -11.1 Na+/H+ antiporter NhaB compare
Pf6N2E2_4743 -3.1 -1.3 hypothetical protein compare
Pf6N2E2_6140 -3.0 -1.3 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_1162 -3.0 -2.9 Transmembrane amino acid efflux protein compare
Pf6N2E2_4072 -3.0 -4.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4803 -3.0 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5178 -3.0 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_546 -2.9 -2.3 FIG00966904: hypothetical protein compare
Pf6N2E2_4451 -2.9 -5.9 FIG139438: lipoprotein B compare
Pf6N2E2_3665 -2.9 -1.2 serine/threonine protein kinase compare
Pf6N2E2_3612 -2.9 -2.0 HflK protein compare
Pf6N2E2_2472 -2.9 -3.9 hypothetical protein compare
Pf6N2E2_2010 -2.9 -1.9 hypothetical protein compare
Pf6N2E2_3942 -2.9 -9.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3941 -2.9 -2.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3833 -2.8 -5.6 hypothetical protein compare
Pf6N2E2_3607 -2.8 -8.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3257 -2.7 -1.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2973 -2.7 -4.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5188 -2.7 -4.4 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2396 -2.6 -4.7 Sensor histidine kinase compare
Pf6N2E2_4075 -2.6 -5.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5727 -2.6 -6.6 FIG00955360: hypothetical protein compare
Pf6N2E2_5523 -2.6 -3.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_4372 -2.6 -5.0 FIG00460773: hypothetical protein compare
Pf6N2E2_5103 -2.6 -1.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4599 -2.5 -3.2 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_3260 -2.5 -3.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2219 -2.5 -2.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3060 -2.5 -3.2 Outer membrane protein H precursor compare
Pf6N2E2_3661 -2.5 -3.4 hypothetical protein compare
Pf6N2E2_4071 -2.5 -4.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4584 -2.4 -3.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_144 -2.4 -13.5 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3303 -2.4 -4.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3876 -2.4 -4.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3659 -2.4 -4.6 Protein fixF compare
Pf6N2E2_4369 -2.4 -1.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_145 -2.4 -5.7 putative exported protein compare
Pf6N2E2_3847 -2.4 -3.2 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2261 -2.4 -5.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_3617 -2.4 -4.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3568 -2.3 -3.2 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_4762 -2.3 -1.8 Biotin synthesis protein BioH compare
Pf6N2E2_2474 -2.3 -8.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2258 -2.3 -7.3 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2274 -2.2 -4.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3835 -2.2 -3.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2706 -2.2 -2.6 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2402 -2.2 -1.7 hypothetical protein compare
Pf6N2E2_5086 -2.2 -1.3 hypothetical protein compare
Pf6N2E2_3611 -2.2 -1.4 HflC protein compare
Pf6N2E2_4139 -2.2 -6.7 Integral membrane protein TerC compare
Pf6N2E2_2574 -2.1 -2.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_3255 -2.1 -3.6 YrbA protein compare
Pf6N2E2_2282 -2.1 -2.9 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5014 -2.1 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3009 -2.1 -2.8 Phage tail tube protein compare
Pf6N2E2_919 -2.1 -2.0 FIG00954373: hypothetical protein compare
Pf6N2E2_3634 -2.1 -1.2 Transporter compare
Pf6N2E2_3842 -2.1 -3.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_302 -2.1 -5.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3658 -2.0 -5.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4416 -2.0 -2.4 Tyrosine recombinase XerC compare
Pf6N2E2_3666 -2.0 -3.1 InaA protein compare
Pf6N2E2_5536 -2.0 -1.9 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5705 -2.0 -2.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5027 -2.0 -8.3 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_2964 -2.0 -2.4 FIG006285: ICC-like protein phosphoesterase compare
Pf6N2E2_3283 -2.0 -4.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_2487 -2.0 -1.2 FIG00956090: hypothetical protein compare
Pf6N2E2_5754 -2.0 -8.3 Long-chain fatty acid transport protein compare
Pf6N2E2_5987 -1.9 -4.0 OmpA family protein compare
Pf6N2E2_1797 -1.9 -2.3 Transcriptional regulator compare
Pf6N2E2_3770 -1.9 -2.2 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_2323 -1.9 -2.1 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_3253 -1.9 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_6057 -1.9 -2.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5605 -1.9 -3.3 FxsA protein compare
Pf6N2E2_5155 -1.9 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3841 -1.8 -4.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2181 -1.8 -1.8 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3351 -1.8 -4.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2384 -1.8 -3.6 CmpX compare
Pf6N2E2_2126 -1.8 -5.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3587 -1.8 -3.6 Azurin compare
Pf6N2E2_3460 -1.8 -1.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5111 -1.8 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_4041 -1.8 -10.6 Acetyl-CoA hydrolase (EC 3.1.2.1) compare
Pf6N2E2_5545 -1.8 -3.6 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_446 -1.8 -6.2 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_1490 -1.8 -1.7 hypothetical protein compare
Pf6N2E2_2217 -1.8 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3258 -1.8 -3.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2189 -1.8 -3.9 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2073 -1.7 -5.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4062 -1.7 -3.4 hypothetical protein compare
Pf6N2E2_2264 -1.7 -3.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1281 -1.7 -2.8 ATPase involved in DNA repair compare
Pf6N2E2_4365 -1.7 -5.4 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_3454 -1.7 -2.0 hypothetical protein compare
Pf6N2E2_4773 -1.7 -1.0 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2371 -1.7 -1.2 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_37 -1.7 -2.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_4204 -1.7 -1.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5663 -1.7 -3.6 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_3179 -1.7 -2.1 FIG021952: putative membrane protein compare
Pf6N2E2_5316 -1.7 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2420 -1.7 -1.8 hypothetical protein compare
Pf6N2E2_1056 -1.6 -0.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5406 -1.6 -2.2 FIG00958224: hypothetical protein compare
Pf6N2E2_1435 -1.6 -2.1 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_3839 -1.6 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1560 -1.6 -2.9 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_2440 -1.6 -1.3 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_1917 -1.6 -1.9 hypothetical protein compare
Pf6N2E2_3516 -1.6 -1.4 Probable transmembrane protein compare
Pf6N2E2_3199 -1.6 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_2938 -1.6 -3.4 Outer membrane lipoprotein compare
Pf6N2E2_648 -1.5 -1.7 General secretion pathway protein K compare
Pf6N2E2_1824 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_2755 -1.5 -1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_445 -1.5 -3.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_1044 -1.5 -2.4 hypothetical protein compare
Pf6N2E2_5328 -1.5 -3.1 FIG00958649: hypothetical protein compare
Pf6N2E2_4560 -1.5 -3.5 probable integral membrane protein NMA1899 compare
Pf6N2E2_3521 -1.5 -6.2 Sensor histidine kinase/response regulator compare
Pf6N2E2_613 -1.5 -1.2 lipoprotein, putative compare
Pf6N2E2_424 -1.5 -4.6 Decarboxylase family protein compare
Pf6N2E2_2753 -1.5 -2.0 HtrA protease/chaperone protein compare
Pf6N2E2_828 -1.5 -3.4 Transcriptional regulator, TetR family compare
Pf6N2E2_3791 -1.5 -5.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5245 -1.5 -4.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4585 -1.5 -6.6 Cell division protein FtsX compare
Pf6N2E2_987 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_178 -1.4 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_6130 -1.4 -2.4 5S RNA compare
Pf6N2E2_902 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_719 -1.4 -1.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_4611 -1.4 -2.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3505 -1.4 -1.3 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1288 -1.3 -1.0 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_2152 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_1762 -1.3 -2.3 putative lipase compare
Pf6N2E2_2507 -1.3 -3.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3610 -1.3 -2.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5017 -1.3 -3.2 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf6N2E2_2072 -1.3 -3.0 hypothetical protein compare
Pf6N2E2_3792 -1.3 -4.3 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5510 -1.3 -1.2 FIG00955324: hypothetical protein compare
Pf6N2E2_1440 -1.3 -2.3 Putative tRNA-m1A22 methylase compare
Pf6N2E2_5242 -1.3 -1.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4545 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_2910 -1.3 -3.0 Carbamate kinase (EC 2.7.2.2) compare
Pf6N2E2_5555 -1.3 -1.0 Cold shock protein CspA compare
Pf6N2E2_2473 -1.3 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_1636 -1.3 -5.0 Ferrichrome-iron receptor compare
Pf6N2E2_3062 -1.3 -2.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_1625 -1.3 -1.8 Ferric reductase (1.6.99.14) compare
Pf6N2E2_288 -1.3 -1.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5049 -1.3 -1.6 acetyltransferase, GNAT family compare
Pf6N2E2_5160 -1.3 -1.1 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5647 -1.3 -3.5 Transcriptional regulator, TetR family compare
Pf6N2E2_5522 -1.3 -1.5 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_1545 -1.2 -3.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4661 -1.2 -2.0 KluA regulatory protein compare
Pf6N2E2_2279 -1.2 -3.2 FIG00954981: hypothetical protein compare
Pf6N2E2_122 -1.2 -1.5 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5252 -1.2 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_3920 -1.2 -6.5 Cystine ABC transporter, permease protein compare
Pf6N2E2_1747 -1.2 -2.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_282 -1.2 -0.9 GNAT family acetyltransferase YjcF compare
Pf6N2E2_5986 -1.2 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3944 -1.2 -2.3 Protein of unknown function DUF81 compare
Pf6N2E2_4206 -1.2 -1.0 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_229 -1.2 -2.1 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_5646 -1.2 -1.0 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5806 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_201 -1.2 -3.3 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare


Specific Phenotypes

For 4 genes in this experiment

For stress sodium iodate in Pseudomonas fluorescens FW300-N2E2

For stress sodium iodate across organisms