Experiment set5IT080 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Aerobic_180MIN_ZN14A

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -5.5 -8.3 outer membrane protein TolC compare
CSW01_02890 -3.3 -11.4 aspartate kinase compare
CSW01_01015 -2.5 -14.3 DNA helicase II compare
CSW01_05575 -2.4 -2.8 phosphate acetyltransferase compare
CSW01_09245 -2.3 -5.7 Holliday junction branch migration protein RuvA compare
CSW01_01300 -2.0 -4.5 sugar ABC transporter compare
CSW01_13305 -2.0 -2.3 shikimate kinase compare
CSW01_02875 -1.9 -7.1 DNA recombination/repair protein RecA compare
CSW01_18350 -1.9 -1.2 cell division protein DedD compare
CSW01_02755 -1.8 -2.1 glutamyl-tRNA amidotransferase compare
CSW01_12250 -1.8 -6.6 site-specific tyrosine recombinase XerD compare
CSW01_13420 -1.7 -3.1 elongation factor P--(R)-beta-lysine ligase compare
CSW01_11535 -1.6 -5.7 thiamine-phosphate kinase compare
CSW01_09350 -1.5 -10.4 formate C-acetyltransferase compare
CSW01_07190 -1.5 -4.5 transcriptional regulator FNR compare
CSW01_04935 -1.4 -1.1 phosphocarrier protein HPr compare
CSW01_09365 -1.4 -5.4 pyruvate formate lyase 1-activating protein compare
CSW01_14680 -1.4 -1.9 aminotransferase compare
CSW01_13805 -1.3 -3.3 Hsp33 family molecular chaperone HslO compare
CSW01_09240 -1.3 -3.8 Holliday junction branch migration DNA helicase RuvB compare
CSW01_13285 -1.3 -2.4 ribulose-phosphate 3-epimerase compare
CSW01_05630 -1.3 -7.1 replication-associated recombination protein A compare
CSW01_03795 -1.2 -1.2 phosphate ABC transporter ATP-binding protein compare
CSW01_01295 -1.2 -1.6 ABC transporter permease compare
CSW01_08345 -1.1 -2.4 hypothetical protein compare
CSW01_00560 -1.1 -2.4 DNA polymerase I compare
CSW01_08675 -1.1 -1.6 DUF2007 domain-containing protein compare
CSW01_12320 -1.1 -1.8 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_08450 -1.1 -1.9 antimicrobial peptide ABC transporter permease SapB compare
CSW01_00650 -1.1 -5.1 tyrosine recombinase XerC compare
CSW01_09525 -1.1 -0.7 DNA translocase FtsK compare
CSW01_09620 -1.1 -1.7 trigger factor compare
CSW01_08620 -1.1 -6.3 chromosome partition protein MukB compare
CSW01_09920 -1.0 -1.7 chromosome partitioning protein ParA compare
CSW01_08625 -1.0 -4.2 chromosome partition protein MukE compare
CSW01_15990 -1.0 -3.0 hypothetical protein compare
CSW01_08710 -1.0 -3.0 hypothetical protein compare
CSW01_01265 -1.0 -2.3 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_08435 -1.0 -3.0 phage shock protein PspA compare
CSW01_00615 -0.9 -2.1 hypothetical protein compare
CSW01_13300 -0.9 -3.8 3-dehydroquinate synthase compare
CSW01_02450 -0.9 -5.4 pyrroline-5-carboxylate reductase compare
CSW01_03950 -0.9 -3.0 hypothetical protein compare
CSW01_04650 -0.9 -1.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_08630 -0.9 -3.9 condensin subunit F compare
CSW01_07440 -0.8 -2.4 DUF3634 domain-containing protein compare
CSW01_17780 -0.8 -1.4 hypothetical protein compare
CSW01_01800 -0.8 -1.6 tRNA-Met compare
CSW01_15870 -0.8 -1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_05125 -0.8 -1.9 ribonuclease T compare
CSW01_10385 -0.8 -5.3 Fe(2+) transporter permease subunit FeoB compare
CSW01_05195 -0.8 -3.5 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_15310 -0.8 -2.4 exoribonuclease R compare
CSW01_03915 -0.8 -1.7 Fe-S assembly protein IscX compare
CSW01_05275 -0.8 -1.3 hypothetical protein compare
CSW01_16285 -0.8 -1.7 acetyltransferase compare
CSW01_11565 -0.8 -2.0 transcriptional regulator NrdR compare
CSW01_11115 -0.8 -2.2 hypothetical protein compare
CSW01_16325 -0.8 -1.3 hypothetical protein compare
CSW01_10390 -0.8 -1.5 ferrous iron transport protein A compare
CSW01_11785 -0.8 -0.5 exonuclease V subunit gamma compare
CSW01_09560 -0.7 -2.5 orotidine-5'-phosphate decarboxylase compare
CSW01_07155 -0.7 -1.6 spermidine/putrescine ABC transporter permease PotB compare
CSW01_00025 -0.7 -0.9 membrane protein insertion efficiency factor YidD compare
CSW01_10745 -0.7 -1.4 DUF2897 domain-containing protein compare
CSW01_05580 -0.7 -2.7 acetate kinase compare
CSW01_12365 -0.7 -1.7 inorganic phosphate transporter compare
CSW01_08195 -0.7 -2.9 ABC transporter ATP-binding protein compare
CSW01_10835 -0.7 -2.6 hypothetical protein compare
CSW01_09970 -0.7 -3.2 peptide-methionine (R)-S-oxide reductase compare
CSW01_14125 -0.7 -2.6 1,4-alpha-glucan branching enzyme compare
CSW01_09250 -0.7 -0.7 crossover junction endodeoxyribonuclease RuvC compare
CSW01_03095 -0.6 -1.9 hypothetical protein compare
CSW01_12130 -0.6 -1.7 DUF721 domain-containing protein compare
CSW01_01195 -0.6 -0.6 ADP-heptose--LPS heptosyltransferase I compare
CSW01_16195 -0.6 -0.9 DUF645 domain-containing protein compare
CSW01_16435 -0.6 -1.1 DUF3265 domain-containing protein compare
CSW01_11690 -0.6 -3.6 hypothetical protein compare
CSW01_10485 -0.6 -0.9 DUF2788 domain-containing protein compare
CSW01_03155 -0.6 -3.6 RNA polymerase-binding transcription factor DksA compare
CSW01_03325 -0.6 -1.1 porin compare
CSW01_00900 -0.6 -1.2 hypothetical protein compare
CSW01_05020 -0.6 -1.8 regulatory protein ToxS compare
CSW01_11415 -0.6 -2.6 phenolic acid decarboxylase compare
CSW01_01845 -0.6 -4.1 protease modulator HflK compare
CSW01_06030 -0.6 -1.3 helicase compare
CSW01_07160 -0.6 -2.5 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_00850 -0.6 -5.3 multidrug resistance protein compare
CSW01_16590 -0.6 -1.0 N-acetyltransferase compare
CSW01_01965 -0.6 -0.6 glucose-6-phosphate isomerase compare
CSW01_01875 -0.6 -2.7 hypothetical protein compare
CSW01_14910 -0.6 -1.3 cold-shock protein compare
CSW01_13680 -0.6 -4.7 DNA helicase RecG compare
CSW01_16785 -0.6 -1.9 hypothetical protein compare
CSW01_07500 -0.6 -0.8 DUF2835 domain-containing protein compare
CSW01_05310 -0.6 -1.8 DUF3379 domain-containing protein compare
CSW01_06970 -0.6 -0.6 DUF2256 domain-containing protein compare
CSW01_14470 -0.5 -2.2 DUF134 domain-containing protein compare
CSW01_11105 -0.5 -2.8 hypothetical protein compare
CSW01_13565 -0.5 -2.3 cell division protein ZapB compare
CSW01_07450 -0.5 -2.4 Lon protease family protein compare
CSW01_13435 -0.5 -2.4 fumarate reductase subunit C compare
CSW01_07820 -0.5 -1.5 RidA family protein compare
CSW01_17255 -0.5 -1.6 nucleoside diphosphate kinase regulator compare
CSW01_03790 -0.5 -1.2 phosphate ABC transporter, permease protein PstA compare
CSW01_05945 -0.5 -2.1 type 1 glutamine amidotransferase compare
CSW01_04375 -0.5 -1.3 SsrA-binding protein compare
CSW01_03330 -0.5 -1.5 transcription elongation factor GreA compare
CSW01_10190 -0.5 -1.8 nucleoid-associated protein compare
CSW01_19095 -0.5 -1.8 DUF445 domain-containing protein compare
CSW01_17740 -0.5 -1.3 nicotinamidase/pyrazinamidase compare
CSW01_17495 -0.5 -2.6 glycerol-3-phosphate dehydrogenase compare
CSW01_10460 -0.5 -2.7 Nif3-like dinuclear metal center hexameric protein compare
CSW01_06280 -0.5 -2.5 succinylglutamate desuccinylase compare
CSW01_03695 -0.5 -2.4 ribosomal large subunit pseudouridine synthase D compare
CSW01_00855 -0.5 -3.7 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_17525 -0.5 -0.9 hypothetical protein compare
CSW01_18420 -0.5 -1.3 hypothetical protein compare
CSW01_14625 -0.5 -1.1 hypothetical protein compare
CSW01_10130 -0.5 -2.3 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
CSW01_10245 -0.5 -1.9 ABC transporter compare
CSW01_16310 -0.5 -0.7 DUF3709 domain-containing protein compare
CSW01_14455 -0.5 -1.5 hypothetical protein compare
CSW01_18315 -0.5 -1.5 methyltransferase compare
CSW01_09485 -0.5 -1.4 DUF1425 domain-containing protein compare
CSW01_01140 -0.5 -1.7 lipid A biosynthesis lauroyl acyltransferase compare
CSW01_00280 -0.5 -2.8 shikimate dehydrogenase compare
CSW01_19415 -0.5 -1.4 hypothetical protein compare
CSW01_07620 -0.5 -1.7 DUF3305 domain-containing protein compare
CSW01_11525 -0.5 -1.4 hypothetical protein compare
CSW01_01920 -0.5 -1.1 bacterioferritin compare
CSW01_05025 -0.5 -2.1 transcriptional regulator compare
CSW01_10165 -0.5 -3.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_17425 -0.5 -1.6 DUF2892 domain-containing protein compare
CSW01_18030 -0.5 -1.0 hypothetical protein compare
CSW01_00095 -0.5 -1.0 hypothetical protein compare
CSW01_07870 -0.4 -1.3 ABC transporter ATP-binding protein compare
CSW01_15425 -0.4 -0.6 DUF3265 domain-containing protein compare
CSW01_14245 -0.4 -1.2 hypothetical protein compare
CSW01_08230 -0.4 -1.3 hypothetical protein compare
CSW01_16130 -0.4 -0.5 acetyltransferase compare
CSW01_04845 -0.4 -1.8 D-alanyl-D-alanine carboxypeptidase compare
CSW01_00955 -0.4 -2.8 hypothetical protein compare
CSW01_15120 -0.4 -1.6 iron(III) ABC transporter permease compare
CSW01_12465 -0.4 -1.8 elongation factor 4 compare
CSW01_03975 -0.4 -1.8 exodeoxyribonuclease VII large subunit compare
CSW01_11710 -0.4 -3.0 transcriptional regulator compare
CSW01_07200 -0.4 -0.8 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_17075 -0.4 -2.0 stress response translation initiation inhibitor YciH compare
CSW01_14060 -0.4 -1.6 hypothetical protein compare
CSW01_09605 -0.4 -1.6 endopeptidase La compare
CSW01_06435 -0.4 -1.5 C4-dicarboxylate ABC transporter compare
CSW01_04820 -0.4 -3.0 serine hydroxymethyltransferase compare
CSW01_01245 -0.4 -1.5 lipopolysaccharide heptosyltransferase II compare
CSW01_03985 -0.4 -1.3 GMP synthase (glutamine-hydrolyzing) compare
CSW01_09625 -0.4 -0.9 hypothetical protein compare
CSW01_18570 -0.4 -2.6 glycine C-acetyltransferase compare
CSW01_19600 -0.4 -2.1 hypothetical protein compare
CSW01_12005 -0.4 -0.8 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_15865 -0.4 -1.1 DUF3465 domain-containing protein compare
CSW01_14310 -0.4 -2.0 DUF1722 domain-containing protein compare
CSW01_05265 -0.4 -0.6 methionine--tRNA ligase compare
CSW01_02315 -0.4 -2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_07550 -0.4 -2.0 GntR family transcriptional regulator compare
CSW01_11915 -0.4 -1.4 hypothetical protein compare
CSW01_08665 -0.4 -1.0 DNA transformation protein compare
CSW01_14965 -0.4 -1.2 hypothetical protein compare
CSW01_18310 -0.4 -0.8 hypothetical protein compare
CSW01_08240 -0.4 -1.0 ATP-binding protein compare
CSW01_11730 -0.4 -0.9 2-dehydropantoate 2-reductase compare
CSW01_12360 -0.4 -1.8 TIGR00153 family protein compare
CSW01_05280 -0.4 -1.6 uridine kinase compare
CSW01_00235 -0.4 -1.3 peptide deformylase compare
CSW01_13675 -0.4 -1.5 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_01515 -0.4 -1.2 type II 3-dehydroquinate dehydratase compare
CSW01_17275 -0.4 -0.5 large conductance mechanosensitive channel protein MscL compare
CSW01_05240 -0.4 -1.2 CBS domain-containing protein compare
CSW01_05210 -0.4 -2.0 GTP 3',8-cyclase MoaA compare
CSW01_15335 -0.4 -1.8 glycine cleavage system protein H compare
CSW01_05990 -0.4 -1.5 agglutination protein compare
CSW01_06045 -0.4 -1.9 lipoprotein compare
CSW01_04105 -0.4 -1.8 sodium pump decarboxylase compare
CSW01_16470 -0.4 -0.9 DUF645 domain-containing protein compare
CSW01_03410 -0.4 -0.6 polyribonucleotide nucleotidyltransferase compare
CSW01_17030 -0.4 -1.1 competence protein ComFB compare
CSW01_14120 -0.4 -2.5 4-alpha-glucanotransferase compare
CSW01_10420 -0.4 -1.3 succinyl-CoA ligase subunit beta compare
CSW01_07075 -0.4 -1.7 MFS transporter compare
CSW01_17885 -0.4 -1.1 hypothetical protein compare
CSW01_00680 -0.4 -2.1 Cof-type HAD-IIB family hydrolase compare
CSW01_08515 -0.4 -1.2 trimethylamine N-oxide reductase system protein TorE compare
CSW01_05230 -0.4 -1.0 molybdopterin synthase catalytic subunit compare
CSW01_04660 -0.4 -2.7 PTS trehalose transporter subunit IIBC compare
CSW01_08045 -0.4 -1.8 hypothetical protein compare
CSW01_07145 -0.4 -1.1 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_06300 -0.4 -1.0 DUF2750 domain-containing protein compare
CSW01_13965 -0.4 -2.7 YigZ family protein compare
CSW01_06395 -0.4 -2.4 iron-regulated protein A compare
CSW01_10180 -0.4 -2.5 Na+/H+ antiporter NhaC compare
CSW01_07570 -0.4 -1.2 nucleotide-binding protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_aerobic experiments

For lb_aerobic LB across organisms