Experiment set5IT080 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_17560 -3.9 -2.1 ROK family transcriptional regulator compare
IAI47_00770 -3.8 -1.1 general stress protein compare
IAI47_09580 -3.6 -3.5 FNR family transcription factor compare
IAI47_14075 -3.3 -2.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_15605 -3.2 -1.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_07475 -3.1 -1.3 hypothetical protein compare
IAI47_15595 -3.1 -2.1 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_06965 -3.0 -1.5 glycosyltransferase family 2 protein compare
IAI47_16390 -2.9 -0.9 tRNA-Leu compare
IAI47_18480 -2.9 -11.2 lipid III flippase WzxE compare
IAI47_13685 -2.8 -2.2 Tol-Pal system protein TolB compare
IAI47_12790 -2.8 -0.8 chromosome partition protein MukE compare
IAI47_14730 -2.8 -1.2 exodeoxyribonuclease VII small subunit compare
IAI47_13050 -2.7 -4.4 YbjN domain-containing protein compare
IAI47_11475 -2.7 -1.1 hypothetical protein compare
IAI47_19710 -2.7 -3.5 helix-turn-helix transcriptional regulator compare
IAI47_00930 -2.7 -10.2 DNA-binding transcriptional regulator OxyR compare
IAI47_05520 -2.6 -1.1 tRNA-Ala compare
IAI47_17235 -2.5 -8.9 stringent starvation protein A compare
IAI47_08705 -2.5 -9.8 carboxy terminal-processing peptidase compare
IAI47_15485 -2.4 -1.2 molecular chaperone Skp compare
IAI47_08445 -2.4 -1.2 Holliday junction branch migration protein RuvA compare
IAI47_13690 -2.4 -0.7 cell envelope integrity protein TolA compare
IAI47_13695 -2.4 -0.7 colicin uptake protein TolR compare
IAI47_08085 -2.4 -5.5 helix-turn-helix domain-containing protein compare
IAI47_18415 -2.4 -2.5 lipoprotein compare
IAI47_11830 -2.4 -6.5 muramoyltetrapeptide carboxypeptidase compare
IAI47_00780 -2.4 -3.2 6-phosphofructokinase compare
IAI47_09305 -2.3 -1.6 cyclic di-GMP phosphodiesterase compare
IAI47_12645 -2.3 -4.1 porin OmpA compare
IAI47_05195 -2.3 -2.6 DnaA inactivator Hda compare
IAI47_18055 -2.2 -5.6 DNA-binding protein HU-alpha compare
IAI47_00515 -2.2 -1.7 DNA-directed RNA polymerase subunit omega compare
IAI47_06325 -2.2 -5.0 acetate kinase compare
IAI47_07165 -2.2 -1.5 exodeoxyribonuclease I compare
IAI47_16990 -2.1 -3.6 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_15635 -2.1 -1.8 RNA polymerase-binding protein DksA compare
IAI47_04300 -2.1 -5.7 recombinase RecA compare
IAI47_09235 -2.0 -1.2 type I DNA topoisomerase compare
IAI47_18470 -2.0 -10.8 ECA oligosaccharide polymerase compare
IAI47_15600 -2.0 -2.4 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_09055 -2.0 -11.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_03820 -2.0 -3.3 site-specific tyrosine recombinase XerD compare
IAI47_13840 -2.0 -2.3 replication initiation negative regulator SeqA compare
IAI47_10470 -2.0 -2.0 electron transport complex subunit E compare
IAI47_00500 -2.0 -10.2 ATP-dependent DNA helicase RecG compare
IAI47_05155 -2.0 -11.5 polyphosphate kinase 1 compare
IAI47_05120 -2.0 -2.5 DUF2158 domain-containing protein compare
IAI47_07010 -2.0 -1.8 ABC transporter permease compare
IAI47_07005 -1.9 -3.6 glycosyltransferase family 4 protein compare
IAI47_11310 -1.9 -3.1 redox-regulated ATPase YchF compare
IAI47_16420 -1.9 -8.6 LacI family DNA-binding transcriptional regulator compare
IAI47_05580 -1.9 -1.4 membrane protein YpdK compare
IAI47_03375 -1.9 -7.3 peptide chain release factor 3 compare
IAI47_12920 -1.9 -3.6 thioredoxin-disulfide reductase compare
IAI47_18520 -1.9 -10.8 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_12865 -1.9 -8.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_02350 -1.8 -0.9 tRNA-Thr compare
IAI47_16085 -1.8 -1.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_12175 -1.8 -2.4 anti-sigma-28 factor FlgM compare
IAI47_18400 -1.8 -2.3 tyrosine recombinase XerC compare
IAI47_13710 -1.7 -2.6 cyd operon protein YbgE compare
IAI47_03725 -1.7 -5.9 phosphoglycerate dehydrogenase compare
IAI47_12470 -1.7 -8.7 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_17120 -1.7 -2.9 BolA family iron metabolism protein IbaG compare
IAI47_17000 -1.7 -8.4 lipoprotein NlpI compare
IAI47_02090 -1.7 -3.3 elongation factor Tu compare
IAI47_08700 -1.7 -5.2 RNA chaperone ProQ compare
IAI47_01535 -1.6 -5.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_03680 -1.6 -8.9 transketolase compare
IAI47_13925 -1.6 -0.7 tRNA-Met compare
IAI47_03610 -1.6 -4.5 YqgE/AlgH family protein compare
IAI47_12885 -1.6 -5.6 pyruvate formate lyase 1-activating protein compare
IAI47_14470 -1.6 -1.8 YbaB/EbfC family nucleoid-associated protein compare
IAI47_00430 -1.6 -9.8 DNA polymerase I compare
IAI47_10840 -1.6 -3.2 pyruvate kinase PykF compare
IAI47_09790 -1.6 -2.0 DUF1161 domain-containing protein compare
IAI47_00735 -1.6 -1.8 protein-export chaperone SecB compare
IAI47_13720 -1.6 -3.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_13485 -1.5 -3.8 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_16190 -1.5 -4.1 molybdopterin adenylyltransferase compare
IAI47_17020 -1.5 -2.5 30S ribosome-binding factor RbfA compare
IAI47_13890 -1.5 -6.6 ROK family transcriptional regulator compare
IAI47_04120 -1.5 -9.5 GTP diphosphokinase compare
IAI47_13700 -1.5 -3.0 Tol-Pal system protein TolQ compare
IAI47_02380 -1.5 -1.7 DNA-binding transcriptional regulator Fis compare
IAI47_11550 -1.5 -2.0 hypothetical protein compare
IAI47_12880 -1.5 -8.9 formate C-acetyltransferase compare
IAI47_10775 -1.5 -3.9 ribonuclease T compare
IAI47_04870 -1.5 -4.4 elongation factor 4 compare
IAI47_04110 -1.5 -10.2 two-component sensor histidine kinase BarA compare
IAI47_03860 -1.4 -6.1 diaminopimelate decarboxylase compare
IAI47_03810 -1.4 -3.6 hypothetical protein compare
IAI47_09165 -1.4 -5.6 tryptophan synthase subunit alpha compare
IAI47_09855 -1.4 -3.0 DUF2384 domain-containing protein compare
IAI47_12280 -1.4 -7.5 glucan biosynthesis protein G compare
IAI47_07300 -1.4 -3.4 hypothetical protein compare
IAI47_06245 -1.4 -2.7 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_05035 -1.4 -1.8 nucleoside-diphosphate kinase compare
IAI47_04835 -1.4 -5.4 ATP-dependent RNA helicase SrmB compare
IAI47_10925 -1.4 -2.6 EAL domain-containing protein compare
IAI47_14945 -1.4 -2.5 pyrroline-5-carboxylate reductase compare
IAI47_17005 -1.4 -3.9 polyribonucleotide nucleotidyltransferase compare
IAI47_07450 -1.4 -2.1 winged helix-turn-helix domain-containing protein compare
IAI47_17035 -1.3 -1.9 ribosome maturation factor RimP compare
IAI47_15110 -1.3 -2.6 chromophore lyase compare
IAI47_03645 -1.3 -8.1 O-antigen ligase family protein compare
IAI47_00940 -1.3 -4.6 HTH-type transcriptional repressor FabR compare
IAI47_05000 -1.3 -3.4 Fe-S cluster assembly transcriptional regulator IscR compare
IAI47_00675 -1.3 -7.9 glycosyltransferase family 9 protein compare
IAI47_00375 -1.3 -9.0 ribose operon transcriptional repressor RbsR compare
IAI47_04750 -1.3 -1.5 hypothetical protein compare
IAI47_18925 -1.3 -4.7 LysR family transcriptional regulator compare
IAI47_09750 -1.2 -4.5 ROK family transcriptional regulator compare
IAI47_07025 -1.2 -2.9 glycosyltransferase family 4 protein compare
IAI47_04425 -1.2 -4.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_19940 -1.2 -2.5 hypothetical protein compare
IAI47_15025 -1.2 -1.3 transcriptional regulator LldR compare
IAI47_18840 -1.2 -1.8 membrane protein insertion efficiency factor YidD compare
IAI47_06040 -1.2 -1.8 DNA polymerase V compare
IAI47_10825 -1.2 -0.9 tRNA-Val compare
IAI47_06320 -1.2 -4.0 phosphate acetyltransferase compare
IAI47_03240 -1.1 -2.8 TonB system transport protein ExbD compare
IAI47_21355 -1.1 -3.1 DUF3606 domain-containing protein compare
IAI47_08335 -1.1 -3.7 chemotaxis response regulator CheY compare
IAI47_16080 -1.1 -4.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_18410 -1.1 -2.7 diaminopimelate epimerase compare
IAI47_07030 -1.1 -4.0 HAD family hydrolase compare
IAI47_01005 -1.1 -6.2 DUF413 domain-containing protein compare
IAI47_16350 -1.1 -5.2 phosphoserine phosphatase compare
IAI47_11760 -1.1 -1.1 TonB-dependent siderophore receptor compare
IAI47_08105 -1.1 -1.9 DinI family protein compare
IAI47_19365 -1.1 -2.9 DUF1471 domain-containing protein compare
IAI47_09990 -1.1 -3.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
IAI47_12275 -1.1 -7.1 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_12105 -1.1 -4.5 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI47_21180 -1.1 -2.1 IS6 family transposase compare
IAI47_06680 -1.1 -2.7 LysR family transcriptional regulator compare
IAI47_08300 -1.1 -5.9 chemotaxis protein CheA compare
IAI47_06240 -1.1 -4.0 aspartate-semialdehyde dehydrogenase compare
IAI47_06630 -1.1 -4.9 phosphatase PAP2 family protein compare
IAI47_01820 -1.1 -4.6 two-component system response regulator OmpR compare
IAI47_04950 -1.1 -4.1 nitrogen regulatory protein P-II compare
IAI47_21765 -1.1 -1.0 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_19600 -1.0 -2.1 ABC transporter ATP-binding protein compare
IAI47_05510 -1.0 -5.1 putative DNA-binding transcriptional regulator compare
IAI47_07040 -1.0 -1.5 acyltransferase compare
IAI47_19675 -1.0 -1.2 ParD-like family protein compare
IAI47_14810 -1.0 -3.8 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
IAI47_18830 -1.0 -0.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_07975 -1.0 -3.1 flagellar biosynthesis protein FliQ compare
IAI47_02305 -1.0 -2.5 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
IAI47_08675 -1.0 -2.5 metallophosphoesterase compare
IAI47_09345 -1.0 -3.4 LysR family transcriptional regulator compare
IAI47_03640 -1.0 -5.6 glycosyltransferase compare
IAI47_07020 -1.0 -0.8 hypothetical protein compare
IAI47_15115 -1.0 -4.4 glutamate-5-semialdehyde dehydrogenase compare
IAI47_02585 -1.0 -1.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_12085 -1.0 -3.7 phosphate acyltransferase PlsX compare
IAI47_17975 -1.0 -2.4 YjbF family lipoprotein compare
IAI47_20640 -1.0 -2.2 hypothetical protein compare
IAI47_18485 -1.0 -5.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_07015 -1.0 -2.7 ABC transporter ATP-binding protein compare
IAI47_02385 -1.0 -4.3 tRNA dihydrouridine synthase DusB compare
IAI47_13885 -1.0 -1.2 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_17165 -1.0 -4.6 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_00330 -1.0 -5.7 low affinity potassium transporter Kup compare
IAI47_18675 -1.0 -2.9 MarR family transcriptional regulator compare
IAI47_16095 -1.0 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_02625 -1.0 -6.5 ribonuclease R compare
IAI47_01475 -1.0 -4.2 MurR/RpiR family transcriptional regulator compare
IAI47_10165 -1.0 -3.0 PTS sugar transporter subunit IIA compare
IAI47_18490 -0.9 -2.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_09525 -0.9 -3.2 serine protease compare
IAI47_08140 -0.9 -5.2 flagellar filament capping protein FliD compare
IAI47_11520 -0.9 -2.0 type VI secretion system tip protein VgrG compare
IAI47_06505 -0.9 -4.8 type I secretion system permease/ATPase compare
IAI47_00670 -0.9 -6.6 sugar glycosyltransferase compare
IAI47_18935 -0.9 -2.9 tautomerase family protein compare
IAI47_10050 -0.9 -1.4 hypothetical protein compare
IAI47_16955 -0.9 -2.8 N-acetyltransferase compare
IAI47_06500 -0.9 -3.8 TolC family outer membrane protein compare
IAI47_18705 -0.9 -4.9 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_12115 -0.9 -4.1 flagellar hook-associated protein FlgL compare
IAI47_20065 -0.9 -2.8 YebG family protein compare
IAI47_09720 -0.9 -4.1 TetR/AcrR family transcriptional regulator compare
IAI47_00835 -0.9 -1.4 cell division protein ZapB compare
IAI47_16870 -0.9 -2.6 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_07090 -0.9 -3.5 histidinol dehydrogenase compare
IAI47_07790 -0.9 -0.9 ribose 1,5-bisphosphokinase compare
IAI47_07085 -0.9 -4.6 histidinol-phosphate transaminase compare
IAI47_12180 -0.9 -3.4 flagellar export chaperone FlgN compare
IAI47_16195 -0.9 -4.1 transaldolase compare
IAI47_08355 -0.9 -1.7 flagellar protein FlhE compare
IAI47_11870 -0.9 -1.8 DUF2767 family protein compare
IAI47_00110 -0.9 -3.1 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_07885 -0.9 -0.6 tRNA-Asn compare
IAI47_06900 -0.8 -1.6 phosphatase PAP2 family protein compare
IAI47_00505 -0.8 -3.0 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_08000 -0.8 -3.3 flagellar basal body-associated protein FliL compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms