Experiment set5IT080 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Cephradine 0.03 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -5.6 -5.4 chromosomal replication initiator protein DnaA compare
BBR_RS10625 -5.0 -3.4 FHA domain-containing protein compare
BBR_RS12545 -4.9 -3.4 DUF4012 domain-containing protein compare
BBR_RS15055 -4.3 -2.9 hypothetical protein compare
BBR_RS12235 -4.3 -2.3 hypothetical protein compare
BBR_RS20435 -4.2 -2.2 CCA tRNA nucleotidyltransferase compare
BBR_RS10620 -3.9 -4.6 phosphoprotein phosphatase compare
BBR_RS14190 -3.8 -12.5 transcriptional regulator compare
BBR_RS15070 -3.4 -5.7 endolytic transglycosylase MltG compare
BBR_RS11175 -3.3 -16.0 penicillin-binding protein compare
BBR_RS19160 -3.3 -2.3 phosphate ABC transporter permease subunit PstC compare
BBR_RS13490 -3.1 -2.4 30S ribosomal protein S7 compare
BBR_RS12590 -3.1 -3.7 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS18180 -2.9 -10.7 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS12045 -2.8 -6.0 hypothetical protein compare
BBR_RS10940 -2.7 -13.2 DedA family protein compare
BBR_RS16750 -2.6 -2.5 ParA family protein compare
BBR_RS15520 -2.6 -3.9 shikimate 5-dehydrogenase compare
BBR_RS19125 -2.4 -11.3 hypothetical protein compare
BBR_RS11540 -2.4 -2.9 DUF1727 domain-containing protein compare
BBR_RS18690 -2.3 -7.8 diacylglycerol kinase compare
BBR_RS20465 -2.3 -7.4 chromosome partitioning protein compare
BBR_RS18725 -2.3 -3.1 ribonuclease HI compare
BBR_RS19815 -2.3 -16.2 ABC transporter permease compare
BBR_RS16635 -2.3 -2.7 ABC transporter ATP-binding protein compare
BBR_RS14540 -2.3 -2.6 Na+/H+ antiporter NhaA compare
BBR_RS17500 -2.2 -6.9 hypothetical protein compare
BBR_RS18565 -2.2 -2.1 CHAP domain-containing protein compare
BBR_RS14260 -2.2 -1.8 ABC transporter ATP-binding protein compare
BBR_RS20825 -2.2 -2.1 hypothetical protein compare
BBR_RS20460 -2.2 -5.2 chromosome partitioning protein ParB compare
BBR_RS18745 -2.2 -2.4 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS17640 -2.1 -2.5 DNA-directed RNA polymerase subunit omega compare
BBR_RS17495 -2.1 -9.5 DUF58 domain-containing protein compare
BBR_RS14265 -2.1 -4.9 Solute-binding protein of ABC transporter system for metals compare
BBR_RS17510 -2.0 -7.6 VWA domain-containing protein compare
BBR_RS13040 -2.0 -1.4 CHAP domain-containing protein compare
BBR_RS16845 -2.0 -2.2 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS19820 -2.0 -13.0 ATP-binding protein of ABC transporter system compare
BBR_RS15085 -1.9 -2.0 3-dehydroquinate synthase compare
BBR_RS17505 -1.8 -8.4 VWA domain-containing protein compare
BBR_RS18050 -1.8 -3.0 threonylcarbamoyl-AMP synthase compare
BBR_RS11720 -1.8 -5.1 DUF2469 domain-containing protein compare
BBR_RS19120 -1.8 -7.6 helicase compare
BBR_RS13070 -1.8 -1.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS13805 -1.8 -2.2 hypothetical protein compare
BBR_RS13370 -1.7 -2.5 phosphoribosylamine--glycine ligase compare
BBR_RS19760 -1.7 -1.5 polysaccharide ABC transporter ATPase compare
BBR_RS19190 -1.7 -6.7 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS10615 -1.7 -3.2 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS16425 -1.7 -2.5 DUF3071 domain-containing protein compare
BBR_RS17490 -1.7 -9.3 MoxR family ATPase compare
BBR_RS16625 -1.6 -4.9 DUF3710 domain-containing protein compare
BBR_RS15425 -1.6 -2.4 aspartate carbamoyltransferase compare
BBR_RS16905 -1.6 -4.5 hypothetical protein compare
BBR_RS17515 -1.6 -6.1 hypothetical protein compare
BBR_RS16985 -1.6 -3.7 transcriptional repressor LexA compare
BBR_RS19740 -1.6 -12.2 DUF2142 domain-containing protein compare
BBR_RS19640 -1.6 -1.1 phosphoesterase compare
BBR_RS15440 -1.5 -3.4 orotidine-5'-phosphate decarboxylase compare
BBR_RS16675 -1.5 -3.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS14370 -1.5 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS15455 -1.4 -1.8 orotate phosphoribosyltransferase compare
BBR_RS20850 -1.4 -1.0 resolvase compare
BBR_RS19395 -1.4 -2.1 hypothetical protein compare
BBR_RS17290 -1.4 -5.6 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS20455 -1.3 -5.9 thioredoxin-disulfide reductase compare
BBR_RS19450 -1.3 -1.4 GTPase ObgE compare
BBR_RS18215 -1.3 -6.7 AI-2E family transporter compare
BBR_RS13635 -1.3 -6.3 carbamoyl-phosphate synthase large subunit compare
BBR_RS11590 -1.3 -1.0 30S ribosomal protein S18 compare
BBR_RS14495 -1.3 -2.9 trigger factor compare
BBR_RS19465 -1.3 -2.6 ribonuclease E/G compare
BBR_RS13630 -1.3 -3.6 carbamoyl-phosphate synthase small subunit compare
BBR_RS11675 -1.2 -1.4 hypothetical protein compare
BBR_RS14140 -1.2 -1.9 Ppx/GppA family phosphatase compare
BBR_RS13035 -1.2 -0.8 ABC transporter permease compare
BBR_RS11515 -1.2 -9.0 ammonium transporter compare
BBR_RS11770 -1.2 -2.8 chorismate mutase compare
BBR_RS19755 -1.2 -7.0 glycosyl transferase compare
BBR_RS11510 -1.2 -2.6 signal recognition particle-docking protein FtsY compare
BBR_RS12355 -1.1 -2.7 ribonuclease III compare
BBR_RS14205 -1.1 -2.2 hypothetical protein compare
BBR_RS21015 -1.1 -0.9 hypothetical protein compare
BBR_RS18220 -1.1 -7.0 glycosyltransferase family 2 protein compare
BBR_RS12810 -1.1 -5.1 hypothetical protein compare
BBR_RS15180 -1.1 -4.3 long-chain fatty acid--CoA ligase compare
BBR_RS19795 -1.1 -8.5 hypothetical protein compare
BBR_RS13030 -1.1 -1.0 cell division ATP-binding protein FtsE compare
BBR_RS15860 -1.0 -1.0 DUF2316 domain-containing protein compare
BBR_RS19155 -1.0 -4.8 phosphate ABC transporter, permease protein PstA compare
BBR_RS15450 -1.0 -3.2 dihydroorotate dehydrogenase compare
BBR_RS10580 -1.0 -2.1 septation inhibitor protein compare
BBR_RS12820 -1.0 -7.8 hypothetical protein compare
BBR_RS20955 -1.0 -1.0 hypothetical protein compare
BBR_RS17440 -1.0 -1.6 DUF3027 domain-containing protein compare
BBR_RS18170 -1.0 -1.7 dihydropteroate synthase compare
BBR_RS11665 -1.0 -2.2 hypothetical protein compare
BBR_RS18735 -1.0 -4.5 hypothetical protein compare
BBR_RS15845 -1.0 -0.8 hypothetical protein compare
BBR_RS13750 -1.0 -1.6 DivIVA domain-containing protein compare
BBR_RS17040 -0.9 -3.5 hypothetical protein compare
BBR_RS15760 -0.9 -2.3 MerR family transcriptional regulator compare
BBR_RS14215 -0.9 -1.9 peptidase compare
BBR_RS12305 -0.9 -3.5 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS15020 -0.9 -1.9 membrane protein compare
BBR_RS19260 -0.9 -6.9 hypothetical protein compare
BBR_RS16430 -0.9 -2.2 nucleotide pyrophosphatase compare
BBR_RS15050 -0.9 -2.3 DUF948 domain-containing protein compare
BBR_RS18325 -0.9 -1.7 DNA-binding protein compare
BBR_RS13640 -0.9 -2.9 orotidine-5'-phosphate decarboxylase compare
BBR_RS14210 -0.9 -0.5 hypothetical protein compare
BBR_RS14230 -0.9 -2.5 HAMP domain-containing histidine kinase compare
BBR_RS14240 -0.9 -3.5 1,4-alpha-glucan branching protein GlgB compare
BBR_RS11180 -0.8 -6.6 phosphatase PAP2 family protein compare
BBR_RS16955 -0.8 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS15805 -0.8 -3.3 prolipoprotein diacylglyceryl transferase compare
BBR_RS21170 -0.8 -5.3 membrane protein insertion efficiency factor YidD compare
BBR_RS20415 -0.8 -6.8 G5 domain-containing protein compare
BBR_RS15080 -0.8 -1.7 chorismate synthase compare
BBR_RS16555 -0.8 -0.7 DNA translocase FtsK compare
BBR_RS16610 -0.8 -3.0 hypothetical protein compare
BBR_RS14615 -0.8 -4.0 histidine kinase compare
BBR_RS16950 -0.8 -1.2 hypothetical protein compare
BBR_RS15750 -0.8 -1.0 hypothetical protein compare
BBR_RS16490 -0.8 -1.9 polyprenyl synthase compare
BBR_RS20450 -0.8 -6.6 murein biosynthesis integral membrane protein MurJ compare
BBR_RS15660 -0.8 -2.1 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS10570 -0.8 -3.0 hypothetical protein compare
BBR_RS14475 -0.7 -4.1 formate C-acetyltransferase compare
BBR_RS17460 -0.7 -3.2 TPM domain-containing protein compare
BBR_RS15655 -0.7 -2.3 Holliday junction branch migration protein RuvA compare
BBR_RS14080 -0.7 -1.1 hypothetical protein compare
BBR_RS16275 -0.7 -1.1 leucine--tRNA ligase compare
BBR_RS20400 -0.7 -6.4 serine/threonine protein kinase compare
BBR_RS12605 -0.7 -1.3 glycosyltransferase family 2 protein compare
BBR_RS12980 -0.7 -5.0 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS19535 -0.7 -5.7 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS20960 -0.7 -1.4 hypothetical protein compare
BBR_RS15755 -0.7 -0.7 hypothetical protein compare
BBR_RS10265 -0.7 -4.2 DNA replication and repair protein RecF compare
BBR_RS18635 -0.7 -2.4 PspC domain-containing protein compare
BBR_RS16960 -0.7 -1.8 transcriptional regulator MraZ compare
BBR_RS10755 -0.6 -2.7 adenylosuccinate synthase compare
BBR_RS19540 -0.6 -1.2 homoserine dehydrogenase compare
BBR_RS18045 -0.6 -0.9 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS13720 -0.6 -3.5 hypothetical protein compare
BBR_RS10660 -0.6 -5.3 esterase compare
BBR_RS18990 -0.6 -1.8 AbrB family transcriptional regulator compare
BBR_RS20475 -0.6 -5.5 KH domain-containing protein compare
BBR_RS16530 -0.6 -2.6 recombinase RecA compare
BBR_RS19170 -0.6 -5.0 DNA-binding response regulator compare
BBR_RS15665 -0.6 -2.0 preprotein translocase subunit YajC compare
BBR_RS19095 -0.6 -4.6 magnesium transporter compare
BBR_RS17555 -0.6 -1.7 ubiquitin-like protein Pup compare
BBR_RS12555 -0.6 -3.6 protein-tyrosine-phosphatase compare
BBR_RS17155 -0.6 -0.7 cell division protein SepF compare
BBR_RS15130 -0.6 -1.2 metal-sulfur cluster assembly factor compare
BBR_RS14625 -0.6 -2.9 pyrroline-5-carboxylate reductase compare
BBR_RS19355 -0.6 -0.9 tRNA-Gly compare
BBR_RS14200 -0.6 -1.5 WhiB family transcriptional regulator compare
BBR_RS14075 -0.6 -3.0 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS12900 -0.6 -1.3 DeoR/GlpR transcriptional regulator compare
BBR_RS19750 -0.6 -5.0 LTA synthase family protein compare
BBR_RS20420 -0.6 -3.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS12940 -0.6 -3.2 hypothetical protein compare
BBR_RS13445 -0.5 -4.0 phosphoribosylformylglycinamidine synthase compare
BBR_RS11240 -0.5 -1.9 GtrA family protein compare
BBR_RS12375 -0.5 -0.7 pantetheine-phosphate adenylyltransferase compare
BBR_RS15685 -0.5 -3.4 hypothetical protein compare
BBR_RS19800 -0.5 -4.4 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS16255 -0.5 -1.0 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS14280 -0.5 -0.9 dephospho-CoA kinase compare
BBR_RS17480 -0.5 -2.2 hypothetical protein compare
BBR_RS12380 -0.5 -1.6 DUF3039 domain-containing protein compare
BBR_RS11505 -0.5 -4.1 TetR/AcrR family transcriptional regulator compare
BBR_RS20725 -0.5 -1.8 hypothetical protein compare
BBR_RS20700 -0.5 -1.3 ribulose phosphate epimerase compare
BBR_RS20555 -0.5 -1.1 hypothetical protein compare
BBR_RS21100 -0.5 -1.8 hypothetical protein compare
BBR_RS11255 -0.5 -3.8 hypothetical protein compare
BBR_RS13300 -0.5 -0.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS19270 -0.5 -0.5 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS16655 -0.5 -2.1 tyrosine recombinase XerC compare
BBR_RS14850 -0.5 -0.9 VOC family protein compare
BBR_RS15210 -0.5 -2.7 branched-chain amino acid aminotransferase compare
BBR_RS11805 -0.5 -2.4 hypothetical protein compare
BBR_RS14315 -0.5 -2.1 DNA polymerase I compare
BBR_RS19325 -0.5 -1.5 hypothetical protein compare
BBR_RS19435 -0.4 -0.9 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS15090 -0.4 -0.6 type II 3-dehydroquinate dehydratase compare
BBR_RS14870 -0.4 -1.3 histidine phosphatase family protein compare
BBR_RS20720 -0.4 -2.1 DUF4422 domain-containing protein compare
BBR_RS20480 -0.4 -0.4 membrane protein compare
BBR_RS12655 -0.4 -2.4 glycosyltransferase family 2 protein compare
BBR_RS20745 -0.4 -1.5 hypothetical protein compare
BBR_RS13650 -0.4 -2.4 3'-5' exonuclease compare
BBR_RS12860 -0.4 -3.1 DUF2183 domain-containing protein compare
BBR_RS14040 -0.4 -1.6 GNAT family N-acetyltransferase compare
BBR_RS16220 -0.4 -0.4 DNA cytosine methyltransferase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Cephradine across organisms