Experiment set5IT080 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Cephradine 0.03 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS14400 +1.9 16.9 acetyltransferase compare
BBR_RS20885 +1.3 2.1 hypothetical protein compare
BBR_RS19905 +1.2 1.9 methionine--tRNA ligase compare
BBR_RS11470 +1.1 1.4 6-phosphogluconolactonase compare
BBR_RS15915 +1.1 1.0 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS17415 +1.0 4.0 hypothetical protein compare
BBR_RS20925 +1.0 1.7 amino acid permease compare
BBR_RS16400 +0.9 1.7 hypothetical protein compare
BBR_RS10740 +0.8 1.9 tRNA-Gly compare
BBR_RS14220 +0.8 4.8 phosphomannomutase compare
BBR_RS12620 +0.7 5.6 glycosyltransferase family 1 protein compare
BBR_RS12500 +0.7 1.0 sugar ABC transporter permease compare
BBR_RS13125 +0.7 1.2 ABC transporter permease compare
BBR_RS12550 +0.7 6.0 sugar transferase compare
BBR_RS19055 +0.7 1.4 ferredoxin family protein compare
BBR_RS14985 +0.7 1.2 ATP-dependent DNA helicase PcrA compare
BBR_RS10555 +0.7 2.1 DUF3073 domain-containing protein compare
BBR_RS12505 +0.7 2.1 ABC transporter permease compare
BBR_RS20760 +0.6 1.9 hypothetical protein compare
BBR_RS17650 +0.6 2.1 cell filamentation protein Fic compare
BBR_RS15325 +0.6 2.3 hypothetical protein compare
BBR_RS17905 +0.6 5.5 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS20715 +0.6 2.7 hypothetical protein compare
BBR_RS18645 +0.5 4.4 DNA-binding response regulator compare
BBR_RS11500 +0.5 4.8 glycosyltransferase family 2 protein compare
BBR_RS14660 +0.5 0.8 transcriptional regulator compare
BBR_RS15940 +0.5 2.4 hypothetical protein compare
BBR_RS16855 +0.5 1.8 NUDIX domain-containing protein compare
BBR_RS12770 +0.5 2.2 hypothetical protein compare
BBR_RS20780 +0.5 1.5 hypothetical protein compare
BBR_RS10285 +0.4 0.8 membrane protein compare
BBR_RS14275 +0.4 0.8 30S ribosomal protein S1 compare
BBR_RS14365 +0.4 2.8 hypothetical protein compare
BBR_RS16040 +0.4 1.9 hypothetical protein compare
BBR_RS16890 +0.4 1.7 glucose/galactose transporter compare
BBR_RS13580 +0.4 1.8 nodulation protein L compare
BBR_RS15100 +0.4 3.3 murein L,D-transpeptidase compare
BBR_RS16670 +0.4 1.6 hypothetical protein compare
BBR_RS16015 +0.4 1.5 DUF2089 domain-containing protein compare
BBR_RS12515 +0.4 3.3 LacI family transcriptional regulator compare
BBR_RS14340 +0.4 2.1 helix-turn-helix domain-containing protein compare
BBR_RS12295 +0.4 0.7 RNA-binding protein compare
BBR_RS18175 +0.4 0.5 GTP cyclohydrolase I FolE compare
BBR_RS14970 +0.4 1.2 transcriptional regulator compare
BBR_RS16310 +0.4 2.3 hypothetical protein compare
BBR_RS19370 +0.4 1.6 type I polyketide synthase compare
BBR_RS16330 +0.4 2.6 LacI family transcriptional regulator compare
BBR_RS19115 +0.4 1.5 hypothetical protein compare
BBR_RS14545 +0.4 1.9 TIGR00730 family Rossman fold protein compare
BBR_RS16020 +0.4 0.9 hypothetical protein compare
BBR_RS13305 +0.4 1.7 transcriptional repressor compare
BBR_RS16395 +0.4 2.4 hypothetical protein compare
BBR_RS15155 +0.4 1.0 histidine triad nucleotide-binding protein compare
BBR_RS13940 +0.4 1.7 integrase compare
BBR_RS17295 +0.3 1.4 RNA-binding protein compare
BBR_RS15385 +0.3 1.3 hypothetical protein compare
BBR_RS14600 +0.3 2.1 ABC transporter ATP-binding protein compare
BBR_RS11145 +0.3 0.6 hypothetical protein compare
BBR_RS19440 +0.3 2.9 polysaccharide deacetylase family protein compare
BBR_RS18495 +0.3 2.4 ROK family protein compare
BBR_RS10980 +0.3 2.7 TetR/AcrR family transcriptional regulator compare
BBR_RS11360 +0.3 2.3 restriction endonuclease compare
BBR_RS20750 +0.3 1.0 GntR family transcriptional regulator compare
BBR_RS12395 +0.3 2.6 hypothetical protein compare
BBR_RS16195 +0.3 1.1 hypothetical protein compare
BBR_RS17025 +0.3 2.3 DUF2252 domain-containing protein compare
BBR_RS19240 +0.3 2.7 LacI family transcriptional regulator compare
BBR_RS15650 +0.3 0.5 Holliday junction resolvase compare
BBR_RS18445 +0.3 2.1 hypothetical protein compare
BBR_RS14715 +0.3 0.4 XRE family transcriptional regulator compare
BBR_RS16300 +0.3 1.7 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS15345 +0.3 1.1 transporter compare
BBR_RS16080 +0.3 0.8 DUF1287 domain-containing protein compare
BBR_RS14680 +0.3 2.0 Fic family protein compare
BBR_RS20800 +0.3 0.7 hypothetical protein compare
BBR_RS13430 +0.3 2.2 hypothetical protein compare
BBR_RS20655 +0.3 1.4 hypothetical protein compare
BBR_RS19070 +0.3 0.5 50S ribosomal protein L33 compare
BBR_RS14420 +0.3 1.5 ribosome silencing factor compare
BBR_RS13535 +0.3 2.2 MerR family DNA-binding transcriptional regulator compare
BBR_RS14500 +0.3 1.8 hypothetical protein compare
BBR_RS20865 +0.3 1.1 glycogen phosphorylase compare
BBR_RS17065 +0.3 1.6 aldo/keto reductase compare
BBR_RS13215 +0.3 0.9 hypothetical protein compare
BBR_RS19350 +0.3 0.9 tRNA-Val compare
BBR_RS17185 +0.3 1.9 hypothetical protein compare
BBR_RS15565 +0.3 1.7 hypothetical protein compare
BBR_RS17210 +0.3 2.0 26S protease regulatory subunit compare
BBR_RS16150 +0.3 1.7 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS12600 +0.3 1.5 serine acetyltransferase compare
BBR_RS20665 +0.3 1.1 hypothetical protein compare
BBR_RS14945 +0.3 1.5 peptidase E compare
BBR_RS13505 +0.3 1.5 DUF4391 domain-containing protein compare
BBR_RS16820 +0.3 0.9 RNA polymerase sigma factor RpoE compare
BBR_RS16885 +0.3 2.2 carbohydrate kinase compare
BBR_RS12310 +0.3 0.4 signal recognition particle protein compare
BBR_RS20770 +0.3 1.1 30S ribosomal protein S14 compare
BBR_RS16090 +0.3 1.5 phosphoribosyl-AMP cyclohydrolase compare
BBR_RS17405 +0.3 1.6 creatininase compare
BBR_RS14565 +0.3 1.8 DNA-processing protein DprA compare
BBR_RS14045 +0.3 1.2 GntR family transcriptional regulator compare
BBR_RS14765 +0.3 0.7 hypothetical protein compare
BBR_RS17960 +0.3 1.9 Ppx/GppA family phosphatase compare
BBR_RS15015 +0.3 1.3 cytidine deaminase compare
BBR_RS20920 +0.3 1.0 hypothetical protein compare
BBR_RS13425 +0.3 1.3 hypothetical protein compare
BBR_RS10765 +0.3 2.2 hypothetical protein compare
BBR_RS15415 +0.3 1.4 choloylglycine hydrolase compare
BBR_RS20170 +0.3 2.3 LacI family transcriptional regulator compare
BBR_RS20320 +0.3 2.4 PTS ascorbate transporter subunit IIC compare
BBR_RS13835 +0.3 1.8 FAD-dependent oxidoreductase compare
BBR_RS18550 +0.3 2.0 universal stress protein compare
BBR_RS18570 +0.3 2.1 phosphoserine transaminase compare
BBR_RS21060 +0.3 1.3 hypothetical protein compare
BBR_RS15840 +0.3 1.3 VanZ family protein compare
BBR_RS12490 +0.3 1.4 hypothetical protein compare
BBR_RS15140 +0.2 1.4 RNA methyltransferase compare
BBR_RS13415 +0.2 1.7 hypothetical protein compare
BBR_RS20855 +0.2 0.6 hypothetical protein compare
BBR_RS13610 +0.2 1.6 iron export ABC transporter permease subunit FetB compare
BBR_RS20660 +0.2 1.4 hypothetical protein compare
BBR_RS18140 +0.2 0.6 tRNA-Asp compare
BBR_RS18620 +0.2 1.3 DUF4125 domain-containing protein compare
BBR_RS21160 +0.2 2.1 DUF2961 domain-containing protein compare
BBR_RS19360 +0.2 1.7 hypothetical protein compare
BBR_RS20635 +0.2 0.9 hypothetical protein compare
BBR_RS16155 +0.2 1.8 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS15735 +0.2 1.8 Helicase helY compare
BBR_RS20070 +0.2 1.9 sugar ABC transporter permease compare
BBR_RS13255 +0.2 0.8 hypothetical protein compare
BBR_RS17300 +0.2 1.1 membrane protein compare
BBR_RS14520 +0.2 1.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BBR_RS13270 +0.2 1.5 ABC transporter ATP-binding protein compare
BBR_RS13340 +0.2 1.5 TIGR03943 family protein compare
BBR_RS14065 +0.2 1.0 TnpV protein compare
BBR_RS16035 +0.2 0.6 hypothetical protein compare
BBR_RS13685 +0.2 1.3 DUF4143 domain-containing protein compare
BBR_RS16095 +0.2 1.1 imidazole glycerol phosphate synthase subunit HisF compare
BBR_RS15550 +0.2 0.7 L-lactate dehydrogenase compare
BBR_RS17570 +0.2 1.5 ribulose-phosphate 3-epimerase compare
BBR_RS20785 +0.2 0.8 PadR family transcriptional regulator compare
BBR_RS18770 +0.2 1.8 hypothetical protein compare
BBR_RS20775 +0.2 0.6 DUF4230 domain-containing protein compare
BBR_RS14605 +0.2 1.8 ABC transporter permease compare
BBR_RS17945 +0.2 1.1 nucleoside deoxyribosyltransferase compare
BBR_RS15365 +0.2 1.1 alpha/beta hydrolase compare
BBR_RS13080 +0.2 1.3 LacI family DNA-binding transcriptional regulator compare
BBR_RS13525 +0.2 0.9 CrcB family protein compare
BBR_RS14595 +0.2 1.6 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
BBR_RS13060 +0.2 1.5 amino acid ABC transporter permease compare
BBR_RS14965 +0.2 1.0 DUF2975 domain-containing protein compare
BBR_RS18700 +0.2 1.7 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS15195 +0.2 1.6 NAD(P) transhydrogenase subunit beta compare
BBR_RS17215 +0.2 1.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BBR_RS18525 +0.2 0.6 hypothetical protein compare
BBR_RS15715 +0.2 1.0 Cof-type HAD-IIB family hydrolase compare
BBR_RS13420 +0.2 0.6 DUF4230 domain-containing protein compare
BBR_RS15220 +0.2 1.1 trimeric intracellular cation channel family protein compare
BBR_RS15420 +0.2 1.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
BBR_RS18560 +0.2 1.6 hypothetical protein compare
BBR_RS14485 +0.2 1.1 DUF3000 domain-containing protein compare
BBR_RS15235 +0.2 1.0 coproporphyrinogen III oxidase compare
BBR_RS18660 +0.2 1.8 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase compare
BBR_RS17580 +0.2 1.2 PTS fructose transporter subunit IIB compare
BBR_RS13680 +0.2 1.4 SPFH domain-containing protein compare
BBR_RS11205 +0.2 1.2 HPr family phosphocarrier protein compare
BBR_RS12905 +0.2 0.7 galactose-1-phosphate uridylyltransferase compare
BBR_RS17110 +0.2 1.3 oleate hydratase compare
BBR_RS10770 +0.2 1.3 CrcB family protein compare
BBR_RS13075 +0.2 1.2 23S rRNA pseudouridylate synthase compare
BBR_RS12155 +0.2 1.5 sugar ABC transporter permease compare
BBR_RS13555 +0.2 1.5 excinuclease ABC subunit A compare
BBR_RS20175 +0.2 1.7 LacI family transcriptional regulator compare
BBR_RS12805 +0.2 0.8 hypothetical protein compare
BBR_RS10890 +0.2 1.5 LacI family transcriptional regulator compare
BBR_RS13240 +0.2 1.5 sugar ABC transporter substrate-binding protein compare
BBR_RS15000 +0.2 1.0 ABC transporter ATP-binding protein compare
BBR_RS16870 +0.2 1.1 ROK family protein compare
BBR_RS13670 +0.2 1.4 hypothetical protein compare
BBR_RS13435 +0.2 1.4 hypothetical protein compare
BBR_RS17035 +0.2 0.9 imidazole glycerol phosphate synthase subunit HisH compare
BBR_RS16695 +0.2 0.9 PadR family transcriptional regulator compare
BBR_RS16470 +0.2 1.1 MFS transporter compare
BBR_RS15320 +0.2 0.4 hypothetical protein compare
BBR_RS12775 +0.2 0.7 hypothetical protein compare
BBR_RS20910 +0.2 0.3 DUF1829 domain-containing protein compare
BBR_RS12995 +0.2 1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS20105 +0.2 1.6 YhgE/Pip domain-containing protein compare
BBR_RS15075 +0.2 1.0 peptidase A24 compare
BBR_RS11650 +0.2 1.3 integrase compare
BBR_RS11645 +0.2 0.8 integrase compare
BBR_RS17975 +0.2 0.9 very short patch repair endonuclease compare
BBR_RS14745 +0.2 1.4 MFS transporter compare
BBR_RS11925 +0.2 1.4 hypothetical protein compare
BBR_RS18670 +0.2 1.4 sugar ABC transporter permease compare
BBR_RS17600 +0.2 1.1 HAD family phosphatase compare
BBR_RS15360 +0.2 0.6 hypothetical protein compare
BBR_RS20840 +0.2 0.6 hypothetical protein compare
BBR_RS17380 +0.2 1.1 hypothetical protein compare
BBR_RS13280 +0.2 0.9 ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Cephradine across organisms