Experiment set5IT079 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -4.8 -12.0 outer membrane protein TolC compare
CSW01_02890 -4.3 -11.6 aspartate kinase compare
CSW01_03795 -2.5 -1.7 phosphate ABC transporter ATP-binding protein compare
CSW01_05575 -2.3 -3.9 phosphate acetyltransferase compare
CSW01_01015 -2.1 -13.3 DNA helicase II compare
CSW01_13305 -1.9 -2.7 shikimate kinase compare
CSW01_01300 -1.8 -4.6 sugar ABC transporter compare
CSW01_11535 -1.8 -6.1 thiamine-phosphate kinase compare
CSW01_02875 -1.6 -6.3 DNA recombination/repair protein RecA compare
CSW01_11670 -1.6 -1.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_09245 -1.5 -4.1 Holliday junction branch migration protein RuvA compare
CSW01_08985 -1.4 -2.6 6-phospho-beta-glucosidase compare
CSW01_01295 -1.3 -1.8 ABC transporter permease compare
CSW01_09240 -1.3 -3.8 Holliday junction branch migration DNA helicase RuvB compare
CSW01_09365 -1.3 -4.0 pyruvate formate lyase 1-activating protein compare
CSW01_09350 -1.3 -9.2 formate C-acetyltransferase compare
CSW01_16590 -1.3 -1.9 N-acetyltransferase compare
CSW01_14910 -1.3 -2.5 cold-shock protein compare
CSW01_14055 -1.2 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_13285 -1.2 -2.6 ribulose-phosphate 3-epimerase compare
CSW01_12250 -1.2 -4.7 site-specific tyrosine recombinase XerD compare
CSW01_05630 -1.1 -7.3 replication-associated recombination protein A compare
CSW01_08630 -1.1 -5.1 condensin subunit F compare
CSW01_10875 -1.1 -3.4 redox-regulated ATPase YchF compare
CSW01_09525 -1.1 -0.7 DNA translocase FtsK compare
CSW01_03915 -1.1 -2.3 Fe-S assembly protein IscX compare
CSW01_00650 -1.0 -4.9 tyrosine recombinase XerC compare
CSW01_19435 -1.0 -2.7 hypothetical protein compare
CSW01_08625 -1.0 -4.3 chromosome partition protein MukE compare
CSW01_10560 -1.0 -3.2 chorismate synthase compare
CSW01_13420 -1.0 -2.0 elongation factor P--(R)-beta-lysine ligase compare
CSW01_15310 -1.0 -3.0 exoribonuclease R compare
CSW01_14130 -0.9 -1.5 hypothetical protein compare
CSW01_12365 -0.9 -2.4 inorganic phosphate transporter compare
CSW01_09045 -0.9 -2.9 hypothetical protein compare
CSW01_13805 -0.8 -2.5 Hsp33 family molecular chaperone HslO compare
CSW01_05590 -0.8 -2.6 DNA-binding protein VF530 compare
CSW01_18350 -0.8 -0.8 cell division protein DedD compare
CSW01_00560 -0.8 -2.4 DNA polymerase I compare
CSW01_14815 -0.8 -3.0 hypothetical protein compare
CSW01_02450 -0.8 -5.0 pyrroline-5-carboxylate reductase compare
CSW01_09250 -0.8 -0.8 crossover junction endodeoxyribonuclease RuvC compare
CSW01_08620 -0.7 -5.2 chromosome partition protein MukB compare
CSW01_15810 -0.7 -1.5 hypothetical protein compare
CSW01_04650 -0.7 -1.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_08675 -0.7 -1.3 DUF2007 domain-containing protein compare
CSW01_03790 -0.7 -2.2 phosphate ABC transporter, permease protein PstA compare
CSW01_10545 -0.7 -2.1 hypothetical protein compare
CSW01_03325 -0.7 -1.5 porin compare
CSW01_17780 -0.7 -0.9 hypothetical protein compare
CSW01_10390 -0.7 -2.2 ferrous iron transport protein A compare
CSW01_10190 -0.7 -2.1 nucleoid-associated protein compare
CSW01_14125 -0.7 -3.3 1,4-alpha-glucan branching enzyme compare
CSW01_11565 -0.7 -1.4 transcriptional regulator NrdR compare
CSW01_00465 -0.7 -2.0 twin-arginine translocase subunit TatB compare
CSW01_14680 -0.7 -1.1 aminotransferase compare
CSW01_09620 -0.7 -1.2 trigger factor compare
CSW01_15180 -0.7 -0.9 3-keto-L-gulonate-6-phosphate decarboxylase compare
CSW01_05580 -0.6 -3.3 acetate kinase compare
CSW01_17585 -0.6 -1.1 periplasmic nitrate reductase electron transfer subunit compare
CSW01_10740 -0.6 -1.2 peptidase M15 compare
CSW01_00450 -0.6 -1.2 SCP2 domain-containing protein compare
CSW01_07460 -0.6 -1.1 ribosome modulation factor compare
CSW01_09485 -0.6 -2.0 DUF1425 domain-containing protein compare
CSW01_09520 -0.6 -1.9 disulfide bond formation protein B compare
CSW01_04845 -0.6 -2.4 D-alanyl-D-alanine carboxypeptidase compare
CSW01_11915 -0.6 -2.4 hypothetical protein compare
CSW01_03975 -0.6 -2.5 exodeoxyribonuclease VII large subunit compare
CSW01_05800 -0.6 -2.0 ATP-dependent Clp protease adaptor ClpS compare
CSW01_18775 -0.6 -2.0 hypothetical protein compare
CSW01_01965 -0.6 -0.7 glucose-6-phosphate isomerase compare
CSW01_01725 -0.6 -2.0 TetR family transcriptional regulator compare
CSW01_06825 -0.6 -1.7 acylphosphatase compare
CSW01_10260 -0.6 -1.3 thiol:disulfide interchange protein DsbE compare
CSW01_07160 -0.6 -2.9 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_12680 -0.6 -3.5 cytosol aminopeptidase compare
CSW01_13680 -0.6 -4.7 DNA helicase RecG compare
CSW01_17895 -0.6 -2.3 hypothetical protein compare
CSW01_05020 -0.6 -2.4 regulatory protein ToxS compare
CSW01_10750 -0.6 -2.0 outer membrane protein assembly factor BamC compare
CSW01_11745 -0.6 -1.0 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_06970 -0.6 -1.0 DUF2256 domain-containing protein compare
CSW01_06585 -0.5 -1.3 fumarate hydratase compare
CSW01_11690 -0.5 -3.0 hypothetical protein compare
CSW01_10385 -0.5 -3.6 Fe(2+) transporter permease subunit FeoB compare
CSW01_19095 -0.5 -2.3 DUF445 domain-containing protein compare
CSW01_01490 -0.5 -1.6 Fis family transcriptional regulator compare
CSW01_04315 -0.5 -2.2 TCP pilus virulence regulatory protein compare
CSW01_00855 -0.5 -4.1 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_10565 -0.5 -1.5 hypothetical protein compare
CSW01_05125 -0.5 -1.4 ribonuclease T compare
CSW01_00850 -0.5 -4.3 multidrug resistance protein compare
CSW01_05700 -0.5 -2.6 DUF2878 domain-containing protein compare
CSW01_07155 -0.5 -1.5 spermidine/putrescine ABC transporter permease PotB compare
CSW01_13300 -0.5 -2.6 3-dehydroquinate synthase compare
CSW01_10170 -0.5 -1.1 MarC family protein compare
CSW01_08435 -0.5 -2.8 phage shock protein PspA compare
CSW01_05480 -0.5 -1.8 hypothetical protein compare
CSW01_00085 -0.5 -1.9 heat-shock protein Hsp20 compare
CSW01_09625 -0.5 -0.9 hypothetical protein compare
CSW01_02940 -0.5 -3.5 oxaloacetate decarboxylase subunit gamma compare
CSW01_09955 -0.5 -2.1 L-asparaginase 1 compare
CSW01_05450 -0.5 -2.9 phosphatase compare
CSW01_12820 -0.5 -1.5 ribosome hibernation promoting factor compare
CSW01_12760 -0.5 -1.7 phospholipid-binding protein MlaC compare
CSW01_16325 -0.5 -0.9 hypothetical protein compare
CSW01_01800 -0.5 -1.1 tRNA-Met compare
CSW01_19555 -0.5 -1.3 response regulator compare
CSW01_07620 -0.5 -2.1 DUF3305 domain-containing protein compare
CSW01_15730 -0.5 -0.7 VOC family protein compare
CSW01_04850 -0.5 -2.8 septal ring lytic transglycosylase RlpA compare
CSW01_14325 -0.5 -2.1 peptidase compare
CSW01_13565 -0.5 -2.0 cell division protein ZapB compare
CSW01_15870 -0.5 -1.0 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_05370 -0.5 -0.9 YbaB/EbfC family nucleoid-associated protein compare
CSW01_13440 -0.5 -2.5 fumarate reductase subunit D compare
CSW01_14915 -0.5 -0.9 ribosome alternative rescue factor ArfA compare
CSW01_08515 -0.5 -0.7 trimethylamine N-oxide reductase system protein TorE compare
CSW01_15120 -0.5 -1.5 iron(III) ABC transporter permease compare
CSW01_07145 -0.5 -1.7 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_05240 -0.5 -1.3 CBS domain-containing protein compare
CSW01_16800 -0.4 -3.1 anaerobic ribonucleoside-triphosphate reductase compare
CSW01_18315 -0.4 -1.3 methyltransferase compare
CSW01_00615 -0.4 -0.7 hypothetical protein compare
CSW01_16730 -0.4 -1.9 glutathione S-transferase compare
CSW01_02755 -0.4 -0.8 glutamyl-tRNA amidotransferase compare
CSW01_12465 -0.4 -1.7 elongation factor 4 compare
CSW01_16575 -0.4 -1.3 acetyltransferase compare
CSW01_03330 -0.4 -1.2 transcription elongation factor GreA compare
CSW01_16785 -0.4 -1.0 hypothetical protein compare
CSW01_18525 -0.4 -1.1 integrase compare
CSW01_06945 -0.4 -1.4 hypothetical protein compare
CSW01_16195 -0.4 -0.7 DUF645 domain-containing protein compare
CSW01_05025 -0.4 -2.1 transcriptional regulator compare
CSW01_04910 -0.4 -1.0 PhoH family protein compare
CSW01_14100 -0.4 -0.8 hypothetical protein compare
CSW01_14315 -0.4 -2.5 helix-turn-helix-type transcriptional regulator compare
CSW01_09915 -0.4 -1.7 starvation-inducible protein compare
CSW01_14310 -0.4 -2.5 DUF1722 domain-containing protein compare
CSW01_09605 -0.4 -1.8 endopeptidase La compare
CSW01_10510 -0.4 -1.7 DUF4442 domain-containing protein compare
CSW01_19140 -0.4 -2.0 organic hydroperoxide resistance protein compare
CSW01_14080 -0.4 -0.5 DUF3283 domain-containing protein compare
CSW01_06920 -0.4 -1.3 DUF2760 domain-containing protein compare
CSW01_00495 -0.4 -0.6 SOS-response transcriptional repressor compare
CSW01_08190 -0.4 -2.9 ABC transporter permease compare
CSW01_16255 -0.4 -1.4 hypothetical protein compare
CSW01_14120 -0.4 -2.8 4-alpha-glucanotransferase compare
CSW01_08445 -0.4 -1.7 ABC transporter substrate-binding protein compare
CSW01_17275 -0.4 -0.5 large conductance mechanosensitive channel protein MscL compare
CSW01_07760 -0.4 -1.8 energy transducer TonB compare
CSW01_05195 -0.4 -1.6 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_15865 -0.4 -0.9 DUF3465 domain-containing protein compare
CSW01_00280 -0.4 -2.6 shikimate dehydrogenase compare
CSW01_12770 -0.4 -2.5 ABC transporter permease compare
CSW01_11780 -0.4 -0.6 exodeoxyribonuclease V subunit beta compare
CSW01_12610 -0.4 -0.8 3-isopropylmalate dehydratase small subunit compare
CSW01_12480 -0.4 -0.8 sigma-E factor negative regulatory protein RseA compare
CSW01_06415 -0.4 -0.7 MBL fold metallo-hydrolase compare
CSW01_19590 -0.4 -2.8 two-component sensor histidine kinase compare
CSW01_18595 -0.4 -1.7 VOC family protein compare
CSW01_14040 -0.4 -2.4 chromosome partitioning protein ParB compare
CSW01_17080 -0.4 -0.6 DUF3319 domain-containing protein compare
CSW01_17385 -0.4 -1.3 antibiotic biosynthesis monooxygenase compare
CSW01_00540 -0.4 -0.9 hypothetical protein compare
CSW01_02315 -0.4 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_19445 -0.4 -1.7 1-pyrroline-5-carboxylate dehydrogenase compare
CSW01_14090 -0.4 -2.2 NAD(P)-dependent oxidoreductase compare
CSW01_10050 -0.4 -1.7 hypothetical protein compare
CSW01_18435 -0.4 -1.5 hypothetical protein compare
CSW01_14060 -0.4 -1.9 hypothetical protein compare
CSW01_19130 -0.4 -2.3 FAA hydrolase family protein compare
CSW01_06025 -0.4 -1.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CSW01_19275 -0.4 -2.0 amino acid ABC transporter ATP-binding protein compare
CSW01_08995 -0.4 -1.0 transcriptional regulator compare
CSW01_18205 -0.4 -1.1 dehydratase compare
CSW01_13410 -0.4 -1.8 protein-export protein SecB compare
CSW01_10730 -0.4 -1.4 ArsC family reductase compare
CSW01_08980 -0.4 -0.9 hypothetical protein compare
CSW01_06100 -0.4 -2.2 histidine utilization repressor compare
CSW01_11115 -0.4 -1.1 hypothetical protein compare
CSW01_10265 -0.4 -1.7 c-type cytochrome biogenesis protein CcmF compare
CSW01_04645 -0.4 -1.8 methionine import ATP-binding protein MetN compare
CSW01_18090 -0.4 -2.1 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
CSW01_06420 -0.4 -1.4 DUF2982 domain-containing protein compare
CSW01_10195 -0.4 -1.7 hypothetical protein compare
CSW01_19360 -0.4 -2.4 NAD(P)-dependent oxidoreductase compare
CSW01_19105 -0.4 -1.3 TetR/AcrR family transcriptional regulator compare
CSW01_07445 -0.4 -1.2 macrodomain Ter protein MatP compare
CSW01_00095 -0.4 -0.7 hypothetical protein compare
CSW01_03950 -0.4 -1.0 hypothetical protein compare
CSW01_11870 -0.4 -2.4 DNA repair protein RadA compare
CSW01_13670 -0.4 -1.1 DNA-directed RNA polymerase subunit omega compare
CSW01_05265 -0.4 -0.6 methionine--tRNA ligase compare
CSW01_19505 -0.3 -2.5 two-component system sensor histidine kinase/response regulator compare
CSW01_03785 -0.3 -0.9 phosphate ABC transporter permease compare
CSW01_16705 -0.3 -1.3 hypothetical protein compare
CSW01_06410 -0.3 -1.6 hypothetical protein compare
CSW01_13505 -0.3 -2.7 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
CSW01_07190 -0.3 -1.5 transcriptional regulator FNR compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_anaerobic experiments

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids across organisms