Experiment set5IT078 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Glucosamine Hydrochloride carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO356_05065 +4.4 36.1 LacI family transcriptional regulator conserved
AO356_19840 +2.8 18.5 histidine kinase compare
AO356_19520 +2.6 15.6 isochorismatase compare
AO356_05195 +1.7 12.7 sugar ABC transporter substrate-binding protein compare
AO356_01830 +1.6 9.7 shikimate dehydrogenase conserved
AO356_05190 +1.5 13.4 sugar ABC transporter permease compare
AO356_05060 +1.4 2.1 gluconokinase compare
AO356_05185 +1.4 9.0 sugar ABC transporter permease compare
AO356_05210 +1.3 5.9 chemotaxis protein CheY compare
AO356_05180 +1.3 7.8 sugar ABC transporter ATP-binding protein compare
AO356_05205 +1.2 7.8 histidine kinase compare
AO356_12715 +1.2 4.2 hypothetical protein compare
AO356_00920 +1.2 3.5 cold-shock protein compare
AO356_24520 +1.2 5.1 ArsR family transcriptional regulator compare
AO356_01015 +1.1 2.7 peptidylprolyl isomerase compare
AO356_21835 +1.1 1.3 glyoxalase compare
AO356_13275 +1.1 2.4 multidrug transporter compare
AO356_00130 +1.0 3.0 XRE family transcriptional regulator compare
AO356_25260 +1.0 1.7 iron transporter compare
AO356_29025 +1.0 2.1 hypothetical protein compare
AO356_10145 +1.0 2.8 molecular chaperone Hsp33 compare
AO356_01875 +1.0 1.7 Cro/Cl family transcriptional regulator compare
AO356_07400 +0.9 5.5 pseudouridine synthase compare
AO356_15305 +0.9 2.4 50S rRNA methyltransferase compare
AO356_24580 +0.9 3.3 GntR family transcriptional regulator compare
AO356_29855 +0.9 1.4 hypothetical protein compare
AO356_17050 +0.8 6.5 aldo/keto reductase compare
AO356_28450 +0.8 3.7 aldo/keto reductase compare
AO356_06685 +0.8 1.4 preprotein translocase subunit YajC compare
AO356_11055 +0.8 4.0 long-chain acyl-CoA thioester hydrolase compare
AO356_21310 +0.8 2.1 filamentous hemagglutinin compare
AO356_03065 +0.8 4.0 AAA family ATPase compare
AO356_29795 +0.8 2.1 amino acid transporter compare
AO356_26390 +0.8 2.0 hypothetical protein compare
AO356_02905 +0.8 5.7 amino acid ABC transporter substrate-binding protein compare
AO356_12500 +0.8 5.5 ribonuclease PH compare
AO356_27405 +0.8 1.9 MarR family transcriptional regulator compare
AO356_22405 +0.7 1.8 hypothetical protein compare
AO356_29270 +0.7 1.8 ABC transporter permease compare
AO356_07495 +0.7 2.9 molecular chaperone DnaJ compare
AO356_21220 +0.7 2.2 peptide ABC transporter substrate-binding protein compare
AO356_22565 +0.7 2.1 hypothetical protein compare
AO356_22585 +0.7 1.8 MerR family transcriptional regulator compare
AO356_10170 +0.7 2.2 chemotaxis protein CheY compare
AO356_01825 +0.7 2.8 hypothetical protein compare
AO356_21315 +0.6 3.5 hypothetical protein compare
AO356_09760 +0.6 2.3 glutaredoxin compare
AO356_28105 +0.6 1.8 LuxR family transcriptional regulator compare
AO356_26410 +0.6 2.2 methyltransferase type 12 compare
AO356_10560 +0.6 5.1 ABC transporter compare
AO356_23420 +0.6 4.2 carboxynorspermidine decarboxylase compare
AO356_10580 +0.6 4.4 hypothetical protein compare
AO356_19745 +0.6 4.5 heat-shock protein Hsp90 compare
AO356_17400 +0.6 2.3 transcriptional regulator compare
AO356_27765 +0.6 1.5 hypothetical protein compare
AO356_07300 +0.6 3.1 choline ABC transporter permease compare
AO356_02210 +0.6 1.4 copper-binding protein compare
AO356_20665 +0.6 1.6 fumarylacetoacetate hydrolase compare
AO356_26910 +0.6 1.3 hypothetical protein compare
AO356_25110 +0.6 1.4 protein DnrP compare
AO356_05885 +0.6 4.7 RNA polymerase sigma factor RpoS compare
AO356_10555 +0.6 5.0 hemolysin secretion protein D compare
AO356_28455 +0.6 2.0 transcriptional regulator compare
AO356_01885 +0.6 1.7 hypothetical protein compare
AO356_10570 +0.6 5.6 large adhesive protein compare
AO356_23425 +0.6 2.4 saccharopine dehydrogenase compare
AO356_22745 +0.6 2.3 2-nitropropane dioxygenase compare
AO356_30080 +0.6 1.4 amidophosphoribosyltransferase compare
AO356_08585 +0.6 2.1 50S ribosomal protein L9 compare
AO356_19155 +0.6 3.4 threonine-phosphate decarboxylase compare
AO356_17380 +0.6 4.7 amino acid ABC transporter substrate-binding protein compare
AO356_03430 +0.6 2.2 hypothetical protein compare
AO356_26450 +0.6 1.7 hypothetical protein compare
AO356_30025 +0.6 1.7 ferredoxin compare
AO356_24410 +0.6 1.6 alanine acetyltransferase compare
AO356_02590 +0.6 1.6 hypothetical protein compare
AO356_18150 +0.6 2.0 hypothetical protein compare
AO356_01115 +0.5 1.0 hypothetical protein compare
AO356_21085 +0.5 2.7 cupin compare
AO356_15735 +0.5 3.9 ABC transporter ATP-binding protein compare
AO356_06905 +0.5 4.5 adhesin compare
AO356_04100 +0.5 2.0 ketosteroid isomerase compare
AO356_08180 +0.5 1.8 chemotaxis protein compare
AO356_28160 +0.5 1.7 hypothetical protein compare
AO356_13565 +0.5 2.8 16S rRNA methyltransferase compare
AO356_06085 +0.5 2.0 thiamine biosynthesis protein ThiF compare
AO356_18780 +0.5 1.1 carbon storage regulator compare
AO356_00135 +0.5 3.4 hypothetical protein compare
AO356_23990 +0.5 1.2 amino acid ABC transporter compare
AO356_14335 +0.5 1.6 rRNA methyltransferase compare
AO356_18130 +0.5 2.0 copper resistance protein CopC compare
AO356_04925 +0.5 2.4 protocatechuate 3,4-dioxygenase compare
AO356_25150 +0.5 1.6 molybdenum cofactor biosynthesis protein B compare
AO356_03495 +0.5 2.2 phosphoglycolate phosphatase compare
AO356_06890 +0.5 1.8 cysteine methyltransferase compare
AO356_24325 +0.5 2.0 type VI secretion protein compare
AO356_05000 +0.5 1.9 lysine transporter LysE compare
AO356_09755 +0.5 2.4 preprotein translocase subunit SecB compare
AO356_09420 +0.5 4.4 peptidase compare
AO356_27420 +0.5 2.6 hypothetical protein compare
AO356_26475 +0.5 1.1 lactoylglutathione lyase compare
AO356_08370 +0.5 1.9 urease subunit gamma compare
AO356_15925 +0.5 2.6 ribosomal large subunit pseudouridine synthase D compare
AO356_04025 +0.5 0.7 hypothetical protein compare
AO356_09615 +0.5 1.8 ABC transporter for L-Histidine, permease component (from data) compare
AO356_06105 +0.5 1.1 cold-shock protein compare
AO356_23285 +0.5 2.2 hypothetical protein compare
AO356_01545 +0.5 0.9 hypothetical protein compare
AO356_14130 +0.5 1.5 amidophosphoribosyltransferase compare
AO356_00125 +0.5 1.4 hypothetical protein compare
AO356_15440 +0.5 4.4 histidine kinase compare
AO356_28695 +0.5 1.1 IclR family transcriptional regulator compare
AO356_09425 +0.5 3.2 malate dehydrogenase compare
AO356_25830 +0.5 0.5 DNA repair protein compare
AO356_01275 +0.5 2.4 GntR family transcriptional regulator compare
AO356_23215 +0.5 3.1 conjugal transfer protein TraR compare
AO356_29460 +0.5 1.9 hypothetical protein compare
AO356_26210 +0.5 0.8 histidine kinase compare
AO356_05795 +0.5 1.9 phage tail protein compare
AO356_04965 +0.5 0.7 ATP-dependent helicase compare
AO356_15545 +0.5 1.9 GNAT family acetyltransferase compare
AO356_22265 +0.5 2.0 hypothetical protein compare
AO356_06115 +0.5 1.9 hypothetical protein compare
AO356_11340 +0.5 0.9 NADH-flavin reductase compare
AO356_04920 +0.5 2.0 protocatechuate 3,4-dioxygenase compare
AO356_03240 +0.5 1.6 transcription elongation factor GreB compare
AO356_06900 +0.5 3.9 hypothetical protein compare
AO356_21765 +0.5 1.1 GntR family transcriptional regulator compare
AO356_24855 +0.4 2.3 hypothetical protein compare
AO356_27835 +0.4 2.3 hypothetical protein compare
AO356_18675 +0.4 1.2 hypothetical protein compare
AO356_29160 +0.4 1.1 (2Fe-2S)-binding protein compare
AO356_27360 +0.4 1.2 nitrile hydratase subunit alpha compare
AO356_08320 +0.4 1.7 copper resistance protein CopZ compare
AO356_11035 +0.4 3.3 phosphate ABC transporter permease compare
AO356_16395 +0.4 2.1 chemotaxis protein compare
AO356_07665 +0.4 1.8 hypothetical protein compare
AO356_28730 +0.4 1.6 acriflavine resistance protein B compare
AO356_24450 +0.4 1.3 microcin ABC transporter ATP-binding protein compare
AO356_16185 +0.4 1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_12140 +0.4 1.0 type VI secretion protein compare
AO356_17465 +0.4 2.2 DNA polymerase III subunit chi compare
AO356_23115 +0.4 1.9 hypothetical protein compare
AO356_13505 +0.4 1.1 chemotaxis protein compare
AO356_21790 +0.4 1.1 sulfonate ABC transporter ATP-binding protein compare
AO356_29730 +0.4 0.7 MarR family transcriptional regulator compare
AO356_27520 +0.4 1.8 betaine-aldehyde dehydrogenase compare
AO356_18500 +0.4 1.4 hypothetical protein compare
AO356_13710 +0.4 1.2 fructose-bisphosphate aldolase compare
AO356_13880 +0.4 1.4 DNA-binding protein compare
AO356_11045 +0.4 3.4 phosphate-binding protein compare
AO356_23195 +0.4 2.1 oxidoreductase compare
AO356_26915 +0.4 1.0 Fe-S oxidoreductase compare
AO356_00740 +0.4 2.0 epimerase compare
AO356_28300 +0.4 0.6 hypothetical protein compare
AO356_06695 +0.4 2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_15200 +0.4 2.9 hypothetical protein compare
AO356_25940 +0.4 3.1 histidine kinase compare
AO356_29380 +0.4 1.2 peptide ABC transporter permease compare
AO356_14965 +0.4 3.6 ABC transporter substrate-binding protein compare
AO356_11010 +0.4 3.5 hypothetical protein compare
AO356_27340 +0.4 2.3 phenylacetaldoxime dehydratase compare
AO356_22955 +0.4 1.2 ArsR family transcriptional regulator compare
AO356_08445 +0.4 1.9 TetR family transcriptional regulator compare
AO356_19790 +0.4 3.7 TonB-dependent receptor compare
AO356_20785 +0.4 0.7 hypothetical protein compare
AO356_22435 +0.4 2.0 decarboxylase compare
AO356_16535 +0.4 2.2 MerR family transcriptional regulator compare
AO356_01820 +0.4 2.4 hypothetical protein compare
AO356_23500 +0.4 2.7 TetR family transcriptional regulator compare
AO356_22130 +0.4 1.5 hypothetical protein compare
AO356_13380 +0.4 2.0 tRNA (guanine-N7)-methyltransferase compare
AO356_03595 +0.4 1.0 carbon storage regulator compare
AO356_09355 +0.4 1.7 cytochrome B compare
AO356_20480 +0.4 1.4 hypothetical protein compare
AO356_19780 +0.4 3.0 histidine kinase compare
AO356_21320 +0.4 0.6 tRNA-Asn compare
AO356_29255 +0.4 1.3 hypothetical protein compare
AO356_07340 +0.4 2.9 transcriptional regulator compare
AO356_09350 +0.4 1.3 hypothetical protein compare
AO356_25270 +0.4 1.5 hypothetical protein compare
AO356_25665 +0.4 0.8 3-beta hydroxysteroid dehydrogenase compare
AO356_25990 +0.4 2.0 hypothetical protein compare
AO356_27265 +0.4 2.0 hypothetical protein compare
AO356_02410 +0.4 1.7 cytochrome C oxidase Cbb3 compare
AO356_06940 +0.4 1.9 16S rRNA methyltransferase compare
AO356_04085 +0.4 1.7 hypothetical protein compare
AO356_10465 +0.4 2.9 transporter compare
AO356_28860 +0.4 1.2 transcriptional regulator compare
AO356_19480 +0.4 2.0 lysine transporter LysE compare
AO356_24190 +0.4 2.1 GntR family transcriptional regulator compare
AO356_04975 +0.4 2.5 RNA polymerase-associated protein RapA compare
AO356_28435 +0.4 1.1 SAM-dependent methyltransferase compare
AO356_16890 +0.4 1.6 hypothetical protein compare
AO356_15395 +0.4 1.7 magnesium transporter compare
AO356_00140 +0.4 2.1 hypothetical protein compare
AO356_21200 +0.4 0.7 quercetin 2,3-dioxygenase compare
AO356_21585 +0.4 1.5 branched-chain amino acid transporter compare
AO356_19210 +0.4 1.0 hypothetical protein compare
AO356_26575 +0.4 1.8 low temperature requirement protein A compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source D-Glucosamine Hydrochloride in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Glucosamine Hydrochloride across organisms