Experiment set5IT078 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

200 most important genes:

  gene name fitness t score description  
CSW01_01300 -2.9 -5.1 sugar ABC transporter compare
CSW01_01295 -2.6 -1.7 ABC transporter permease compare
CSW01_05575 -2.2 -4.6 phosphate acetyltransferase compare
CSW01_13305 -2.1 -2.9 shikimate kinase compare
CSW01_13805 -1.6 -4.3 Hsp33 family molecular chaperone HslO compare
CSW01_09365 -1.6 -6.0 pyruvate formate lyase 1-activating protein compare
CSW01_04935 -1.6 -1.8 phosphocarrier protein HPr compare
CSW01_03985 -1.4 -4.0 GMP synthase (glutamine-hydrolyzing) compare
CSW01_10190 -1.4 -5.8 nucleoid-associated protein compare
CSW01_13420 -1.3 -3.0 elongation factor P--(R)-beta-lysine ligase compare
CSW01_14130 -1.3 -2.0 hypothetical protein compare
CSW01_09525 -1.2 -0.8 DNA translocase FtsK compare
CSW01_09350 -1.2 -8.8 formate C-acetyltransferase compare
CSW01_03410 -1.2 -2.3 polyribonucleotide nucleotidyltransferase compare
CSW01_14680 -1.1 -1.9 aminotransferase compare
CSW01_17595 -1.1 -1.5 TIGR02808 family protein compare
CSW01_07190 -1.1 -4.0 transcriptional regulator FNR compare
CSW01_00450 -1.0 -2.0 SCP2 domain-containing protein compare
CSW01_02890 -1.0 -6.3 aspartate kinase compare
CSW01_01800 -1.0 -2.1 tRNA-Met compare
CSW01_12250 -1.0 -4.0 site-specific tyrosine recombinase XerD compare
CSW01_04930 -1.0 -3.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_09620 -1.0 -2.3 trigger factor compare
CSW01_00560 -0.9 -2.7 DNA polymerase I compare
CSW01_05580 -0.9 -3.9 acetate kinase compare
CSW01_00095 -0.9 -2.3 hypothetical protein compare
CSW01_06810 -0.9 -1.1 hypothetical protein compare
CSW01_07200 -0.9 -1.6 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_01265 -0.9 -2.4 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_05265 -0.9 -1.3 methionine--tRNA ligase compare
CSW01_16920 -0.8 -2.3 hypothetical protein compare
CSW01_17780 -0.8 -2.6 hypothetical protein compare
CSW01_09245 -0.8 -3.2 Holliday junction branch migration protein RuvA compare
CSW01_17855 -0.8 -5.5 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_00650 -0.8 -4.3 tyrosine recombinase XerC compare
CSW01_10390 -0.8 -1.5 ferrous iron transport protein A compare
CSW01_10165 -0.8 -6.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_01015 -0.8 -5.7 DNA helicase II compare
CSW01_03475 -0.8 -2.7 ATP-dependent RNA helicase SrmB compare
CSW01_08705 -0.8 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_10485 -0.8 -1.3 DUF2788 domain-containing protein compare
CSW01_03075 -0.8 -2.6 phosphoheptose isomerase compare
CSW01_09240 -0.7 -2.6 Holliday junction branch migration DNA helicase RuvB compare
CSW01_07230 -0.7 -3.1 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_01515 -0.7 -2.2 type II 3-dehydroquinate dehydratase compare
CSW01_11535 -0.7 -3.1 thiamine-phosphate kinase compare
CSW01_14125 -0.7 -3.0 1,4-alpha-glucan branching enzyme compare
CSW01_05275 -0.7 -1.4 hypothetical protein compare
CSW01_03155 -0.7 -4.4 RNA polymerase-binding transcription factor DksA compare
CSW01_08630 -0.7 -3.3 condensin subunit F compare
CSW01_10875 -0.7 -2.4 redox-regulated ATPase YchF compare
CSW01_03870 -0.7 -0.9 inositol monophosphatase compare
CSW01_11690 -0.7 -4.4 hypothetical protein compare
CSW01_10385 -0.7 -4.8 Fe(2+) transporter permease subunit FeoB compare
CSW01_13300 -0.7 -3.7 3-dehydroquinate synthase compare
CSW01_03785 -0.7 -1.7 phosphate ABC transporter permease compare
CSW01_15430 -0.7 -2.1 hypothetical protein compare
CSW01_04820 -0.7 -4.9 serine hydroxymethyltransferase compare
CSW01_18315 -0.7 -2.6 methyltransferase compare
CSW01_16205 -0.7 -1.5 DUF3465 domain-containing protein compare
CSW01_03790 -0.7 -1.7 phosphate ABC transporter, permease protein PstA compare
CSW01_11115 -0.7 -2.7 hypothetical protein compare
CSW01_06970 -0.7 -0.7 DUF2256 domain-containing protein compare
CSW01_12365 -0.7 -1.8 inorganic phosphate transporter compare
CSW01_11565 -0.6 -1.6 transcriptional regulator NrdR compare
CSW01_15000 -0.6 -1.7 rfbP protein compare
CSW01_15560 -0.6 -1.6 lipocalin compare
CSW01_04375 -0.6 -1.9 SsrA-binding protein compare
CSW01_03330 -0.6 -2.3 transcription elongation factor GreA compare
CSW01_02875 -0.6 -3.2 DNA recombination/repair protein RecA compare
CSW01_03065 -0.6 -1.7 ClpXP protease specificity-enhancing factor compare
CSW01_11730 -0.6 -1.5 2-dehydropantoate 2-reductase compare
CSW01_08625 -0.6 -2.4 chromosome partition protein MukE compare
CSW01_04660 -0.6 -4.7 PTS trehalose transporter subunit IIBC compare
CSW01_08435 -0.6 -2.5 phage shock protein PspA compare
CSW01_17275 -0.6 -0.8 large conductance mechanosensitive channel protein MscL compare
CSW01_09045 -0.6 -2.3 hypothetical protein compare
CSW01_02450 -0.6 -4.4 pyrroline-5-carboxylate reductase compare
CSW01_00330 -0.6 -2.4 fluoride efflux transporter CrcB compare
CSW01_10560 -0.6 -2.3 chorismate synthase compare
CSW01_15680 -0.6 -1.9 DUF3265 domain-containing protein compare
CSW01_15145 -0.6 -3.1 acetate kinase compare
CSW01_15005 -0.6 -2.1 HNH endonuclease compare
CSW01_08240 -0.6 -1.4 ATP-binding protein compare
CSW01_06030 -0.6 -1.8 helicase compare
CSW01_05195 -0.5 -2.3 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_00735 -0.5 -1.4 DUF1145 domain-containing protein compare
CSW01_04320 -0.5 -3.9 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_05990 -0.5 -2.1 agglutination protein compare
CSW01_17575 -0.5 -2.0 mycothiol reductase compare
CSW01_01195 -0.5 -0.8 ADP-heptose--LPS heptosyltransferase I compare
CSW01_10750 -0.5 -2.1 outer membrane protein assembly factor BamC compare
CSW01_00955 -0.5 -3.5 hypothetical protein compare
CSW01_03975 -0.5 -2.5 exodeoxyribonuclease VII large subunit compare
CSW01_09955 -0.5 -2.5 L-asparaginase 1 compare
CSW01_17605 -0.5 -1.5 DNA-binding response regulator compare
CSW01_16325 -0.5 -1.0 hypothetical protein compare
CSW01_07215 -0.5 -1.8 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_14815 -0.5 -2.0 hypothetical protein compare
CSW01_12320 -0.5 -0.9 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_14470 -0.5 -2.5 DUF134 domain-containing protein compare
CSW01_04315 -0.5 -2.3 TCP pilus virulence regulatory protein compare
CSW01_08620 -0.5 -3.3 chromosome partition protein MukB compare
CSW01_09520 -0.5 -1.7 disulfide bond formation protein B compare
CSW01_17465 -0.5 -1.9 DedA family protein compare
CSW01_16195 -0.5 -0.8 DUF645 domain-containing protein compare
CSW01_19600 -0.5 -2.3 hypothetical protein compare
CSW01_17255 -0.5 -1.8 nucleoside diphosphate kinase regulator compare
CSW01_04570 -0.5 -1.5 exodeoxyribonuclease 7 small subunit compare
CSW01_07820 -0.4 -1.4 RidA family protein compare
CSW01_02670 -0.4 -2.0 hypothetical protein compare
CSW01_15030 -0.4 -1.7 hypothetical protein compare
CSW01_19345 -0.4 -2.2 YccF domain-containing protein compare
CSW01_15460 -0.4 -0.9 type B-5 chloramphenicol O-acetyltransferase CatB9 compare
CSW01_11915 -0.4 -1.4 hypothetical protein compare
CSW01_10565 -0.4 -2.0 hypothetical protein compare
CSW01_07960 -0.4 -0.9 DUF417 domain-containing protein compare
CSW01_15810 -0.4 -0.9 hypothetical protein compare
CSW01_16930 -0.4 -1.8 YceI family protein compare
CSW01_11075 -0.4 -1.9 hypothetical protein compare
CSW01_00235 -0.4 -1.5 peptide deformylase compare
CSW01_04650 -0.4 -0.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_02315 -0.4 -2.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_08550 -0.4 -2.0 hypothetical protein compare
CSW01_10460 -0.4 -1.8 Nif3-like dinuclear metal center hexameric protein compare
CSW01_07705 -0.4 -2.4 sterol desaturase family protein compare
CSW01_16455 -0.4 -2.0 DJ-1/PfpI family protein compare
CSW01_18525 -0.4 -1.1 integrase compare
CSW01_12815 -0.4 -2.2 RNA polymerase sigma-54 factor compare
CSW01_10290 -0.4 -1.4 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_03915 -0.4 -1.1 Fe-S assembly protein IscX compare
CSW01_16040 -0.4 -2.3 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_11080 -0.4 -1.9 transcriptional regulator compare
CSW01_12680 -0.4 -2.6 cytosol aminopeptidase compare
CSW01_07155 -0.4 -1.1 spermidine/putrescine ABC transporter permease PotB compare
CSW01_06315 -0.4 -1.8 DUF3943 domain-containing protein compare
CSW01_17870 -0.4 -1.4 GIY-YIG nuclease family protein compare
CSW01_10740 -0.4 -0.8 peptidase M15 compare
CSW01_17905 -0.4 -1.6 aquaporin family protein compare
CSW01_13485 -0.4 -2.7 5-carboxymethyl-2-hydroxymuconate isomerase compare
CSW01_11415 -0.4 -1.9 phenolic acid decarboxylase compare
CSW01_10180 -0.4 -3.1 Na+/H+ antiporter NhaC compare
CSW01_18595 -0.4 -1.8 VOC family protein compare
CSW01_13565 -0.4 -1.8 cell division protein ZapB compare
CSW01_08675 -0.4 -0.8 DUF2007 domain-containing protein compare
CSW01_04850 -0.4 -2.2 septal ring lytic transglycosylase RlpA compare
CSW01_12465 -0.4 -1.4 elongation factor 4 compare
CSW01_02755 -0.4 -0.9 glutamyl-tRNA amidotransferase compare
CSW01_03055 -0.4 -0.9 cytochrome c1 compare
CSW01_14220 -0.4 -1.7 HDOD domain-containing protein compare
CSW01_15120 -0.4 -1.2 iron(III) ABC transporter permease compare
CSW01_07605 -0.4 -1.3 molecular chaperone compare
CSW01_11710 -0.4 -1.9 transcriptional regulator compare
CSW01_17390 -0.4 -1.8 oxygen-insensitive NAD(P)H-dependent nitroreductase NfsB compare
CSW01_03850 -0.4 -2.4 tRNA guanosine(34) transglycosylase Tgt compare
CSW01_05230 -0.4 -1.8 molybdopterin synthase catalytic subunit compare
CSW01_11880 -0.4 -1.1 hypothetical protein compare
CSW01_13285 -0.4 -0.9 ribulose-phosphate 3-epimerase compare
CSW01_14055 -0.4 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_19175 -0.4 -2.2 hypothetical protein compare
CSW01_08395 -0.4 -1.8 cardiolipin synthase compare
CSW01_16120 -0.4 -1.6 N-acetyltransferase compare
CSW01_15105 -0.4 -1.7 class II glutamine amidotransferase compare
CSW01_06920 -0.4 -0.9 DUF2760 domain-containing protein compare
CSW01_04285 -0.4 -1.4 toxin coregulated pilus biosynthesis protein R compare
CSW01_03835 -0.4 -1.6 acetoin utilization protein AcuB compare
CSW01_07895 -0.4 -2.4 class II fumarate hydratase compare
CSW01_11120 -0.4 -1.2 hypothetical protein compare
CSW01_17550 -0.3 -2.2 nuclear transport factor 2 family protein compare
CSW01_18545 -0.3 -2.0 non-hemolytic enterotoxin lytic component L1 compare
CSW01_16785 -0.3 -1.3 hypothetical protein compare
CSW01_18775 -0.3 -1.5 hypothetical protein compare
CSW01_08450 -0.3 -0.7 antimicrobial peptide ABC transporter permease SapB compare
CSW01_00540 -0.3 -0.5 hypothetical protein compare
CSW01_16945 -0.3 -1.4 DUF1097 domain-containing protein compare
CSW01_12360 -0.3 -1.6 TIGR00153 family protein compare
CSW01_07890 -0.3 -1.3 hypothetical protein compare
CSW01_02425 -0.3 -1.9 YggW family oxidoreductase compare
CSW01_08590 -0.3 -1.6 hypothetical protein compare
CSW01_13440 -0.3 -1.7 fumarate reductase subunit D compare
CSW01_08665 -0.3 -0.9 DNA transformation protein compare
CSW01_04910 -0.3 -1.2 PhoH family protein compare
CSW01_04585 -0.3 -1.7 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_05430 -0.3 -2.4 GGDEF domain-containing protein compare
CSW01_18570 -0.3 -2.4 glycine C-acetyltransferase compare
CSW01_01440 -0.3 -2.9 lysine:cadaverine antiporter compare
CSW01_17385 -0.3 -1.5 antibiotic biosynthesis monooxygenase compare
CSW01_18040 -0.3 -2.2 methyl-accepting chemotaxis protein compare
CSW01_01490 -0.3 -1.2 Fis family transcriptional regulator compare
CSW01_15310 -0.3 -1.2 exoribonuclease R compare
CSW01_10255 -0.3 -0.7 cytochrome c-type biogenesis protein CcmH compare
CSW01_05215 -0.3 -1.6 molybdenum cofactor biosynthesis protein B compare
CSW01_19540 -0.3 -1.9 chemotaxis protein CheW compare
CSW01_17075 -0.3 -1.5 stress response translation initiation inhibitor YciH compare
CSW01_00400 -0.3 -1.4 hypothetical protein compare
CSW01_12120 -0.3 -1.7 8-oxo-dGTP diphosphatase MutT compare
CSW01_10215 -0.3 -1.6 histone deacetylase compare
CSW01_06940 -0.3 -2.1 hypothetical protein compare
CSW01_05180 -0.3 -0.7 tRNA-Asn compare
CSW01_09660 -0.3 -0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_anaerobic experiments

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids across organisms