Experiment set5IT078 for Burkholderia phytofirmans PsJN

Compare to:

No vitamins, timepoint 2

200 most important genes:

  gene name fitness t score description  
BPHYT_RS05730 -6.2 -6.0 hypothetical protein compare
BPHYT_RS16270 -5.9 -4.0 phosphoglycerate kinase compare
BPHYT_RS13220 -5.9 -5.7 phosphomethylpyrimidine synthase compare
BPHYT_RS18320 -5.9 -4.0 orotate phosphoribosyltransferase compare
BPHYT_RS01590 -5.8 -6.9 methionine biosynthesis protein MetW compare
BPHYT_RS16835 -5.8 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17690 -5.8 -4.0 imidazole glycerol phosphate synthase compare
BPHYT_RS05960 -5.7 -6.8 endoribonuclease L-PSP compare
BPHYT_RS17395 -5.7 -2.9 anthranilate synthase subunit II compare
BPHYT_RS33915 -5.6 -5.5 isopropylmalate isomerase compare
BPHYT_RS14915 -5.6 -3.8 phosphoserine aminotransferase compare
BPHYT_RS04955 -5.4 -2.8 methionyl-tRNA synthetase compare
BPHYT_RS05030 -5.4 -3.7 sugar ABC transporter permease compare
BPHYT_RS17400 -5.4 -5.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS02590 -5.4 -6.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS15650 -5.3 -8.1 quinolinate synthetase compare
BPHYT_RS17685 -5.3 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS15640 -5.3 -9.5 L-aspartate oxidase compare
BPHYT_RS33835 -5.2 -3.6 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17680 -5.2 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17675 -5.1 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16245 -5.1 -3.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33900 -5.1 -6.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS04725 -5.1 -6.0 sulfite reductase compare
BPHYT_RS03150 -5.1 -6.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14845 -5.0 -3.4 cysteine synthase compare
BPHYT_RS14910 -5.0 -5.9 chorismate mutase compare
BPHYT_RS33865 -4.9 -3.4 tryptophan synthase alpha chain compare
BPHYT_RS33880 -4.9 -3.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS15920 -4.9 -5.8 argininosuccinate synthase compare
BPHYT_RS09500 -4.8 -4.7 glucose-6-phosphate isomerase compare
BPHYT_RS05020 -4.8 -3.3 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS06555 -4.8 -4.7 ketol-acid reductoisomerase compare
BPHYT_RS12845 -4.8 -15.7 ATPase compare
BPHYT_RS05225 -4.7 -7.2 phosphoenolpyruvate carboxylase compare
BPHYT_RS17670 -4.7 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17885 -4.7 -3.2 3-dehydroquinate synthase compare
BPHYT_RS17390 -4.7 -8.4 anthranilate synthase subunit I compare
BPHYT_RS12530 -4.6 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS04740 -4.6 -3.2 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS13705 -4.6 -3.1 chorismate synthase compare
BPHYT_RS33875 -4.6 -6.2 tryptophan synthase subunit alpha compare
BPHYT_RS02610 -4.5 -3.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33920 -4.5 -4.4 type II citrate synthase compare
BPHYT_RS05025 -4.5 -5.2 sugar ABC transporter substrate-binding protein compare
BPHYT_RS17855 -4.5 -7.4 glutamate synthase compare
BPHYT_RS16735 -4.4 -4.3 phosphogluconate dehydratase compare
BPHYT_RS09515 -4.4 -3.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS05010 -4.4 -3.0 RpiR family transcriptional regulator compare
BPHYT_RS04965 -4.3 -6.5 ATP-binding protein compare
BPHYT_RS06545 -4.3 -7.6 acetolactate synthase compare
BPHYT_RS14865 -4.3 -4.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS05035 -4.3 -4.1 sugar ABC transporter permease compare
BPHYT_RS33840 -4.2 -7.0 amidophosphoribosyltransferase compare
BPHYT_RS15915 -4.2 -4.1 ornithine carbamoyltransferase compare
BPHYT_RS15645 -4.1 -7.8 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS14895 -4.1 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS01595 -4.1 -9.1 homoserine O-acetyltransferase compare
BPHYT_RS03535 -4.0 -3.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS08960 -4.0 -2.7 threonine synthase compare
BPHYT_RS15670 -4.0 -7.5 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS10100 -4.0 -2.7 dihydroxy-acid dehydratase compare
BPHYT_RS14855 -4.0 -3.8 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS15075 -3.8 -2.6 dihydrokaempferol 4-reductase compare
BPHYT_RS06685 -3.8 -2.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS06045 -3.8 -9.3 transaldolase compare
BPHYT_RS08955 -3.7 -2.6 homoserine dehydrogenase compare
BPHYT_RS16905 -3.7 -5.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS03725 -3.7 -2.4 serine hydroxymethyltransferase compare
BPHYT_RS03645 -3.7 -3.5 tRNA dimethylallyltransferase compare
BPHYT_RS14190 -3.6 -6.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12465 -3.6 -4.2 inositol monophosphatase compare
BPHYT_RS33645 -3.6 -4.9 homoserine kinase compare
BPHYT_RS06405 -3.6 -7.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS17890 -3.6 -2.4 shikimate kinase compare
BPHYT_RS05040 -3.6 -4.8 sugar ABC transporter ATPase compare
BPHYT_RS02905 -3.6 -21.5 RNA polymerase subunit sigma-54 compare
BPHYT_RS04720 -3.5 -4.9 transcriptional regulator compare
BPHYT_RS06190 -3.4 -3.9 heptosyltransferase compare
BPHYT_RS03640 -3.4 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06900 -3.4 -3.3 aspartate aminotransferase compare
BPHYT_RS14195 -3.4 -3.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS12150 -3.2 -17.4 PII uridylyl-transferase compare
BPHYT_RS12840 -3.2 -2.2 pyruvate dehydrogenase compare
BPHYT_RS03625 -3.1 -8.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS02150 -3.1 -3.5 biotin synthase compare
BPHYT_RS17715 -3.1 -4.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17520 -3.1 -6.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS14900 -3.1 -3.3 prephenate dehydrogenase compare
BPHYT_RS17700 -3.0 -2.1 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06375 -3.0 -4.8 ribonuclease compare
BPHYT_RS08850 -2.9 -1.9 transcriptional regulator compare
BPHYT_RS27065 -2.8 -2.3 hypothetical protein compare
BPHYT_RS12985 -2.8 -1.8 amino acid acetyltransferase compare
BPHYT_RS09145 -2.8 -7.4 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS17380 -2.8 -9.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS17405 -2.7 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS02865 -2.7 -3.5 hypothetical protein compare
BPHYT_RS03495 -2.6 -4.1 hypothetical protein compare
BPHYT_RS04745 -2.6 -4.8 sulfate adenylyltransferase compare
BPHYT_RS06610 -2.6 -1.5 triosephosphate isomerase compare
BPHYT_RS33905 -2.6 -1.6 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS16255 -2.5 -1.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS35885 -2.5 -4.7 hypothetical protein compare
BPHYT_RS06175 -2.5 -6.8 LPS biosynthesis compare
BPHYT_RS15710 -2.5 -2.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS16840 -2.4 -1.6 transketolase compare
BPHYT_RS02165 -2.4 -7.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
BPHYT_RS16675 -2.3 -1.5 dihydroorotase compare
BPHYT_RS07325 -2.2 -1.4 GntR family transcriptional regulator compare
BPHYT_RS12940 -2.1 -5.9 signal transduction histidine kinase compare
BPHYT_RS29085 -2.1 -2.5 LysR family transcriptional regulator compare
BPHYT_RS15015 -2.1 -1.8 ArsR family transcriptional regulator compare
BPHYT_RS02155 -2.1 -4.1 dithiobiotin synthetase compare
BPHYT_RS28535 -2.0 -1.3 response regulator receiver compare
BPHYT_RS04730 -2.0 -2.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS12935 -2.0 -4.8 chemotaxis protein CheY compare
BPHYT_RS16975 -2.0 -5.7 shikimate 5-dehydrogenase compare
BPHYT_RS17100 -1.9 -6.8 RNA pyrophosphohydrolase compare
BPHYT_RS08565 -1.9 -1.1 dihydroorotate dehydrogenase compare
BPHYT_RS20025 -1.8 -2.2 crotonase compare
BPHYT_RS17920 -1.8 -2.3 protein CyaY compare
BPHYT_RS10645 -1.8 -1.8 cyanate hydratase compare
BPHYT_RS14550 -1.8 -1.4 tRNA-Asn compare
BPHYT_RS13320 -1.8 -2.1 allantoate amidohydrolase compare
BPHYT_RS19435 -1.7 -3.6 16S rRNA methyltransferase compare
BPHYT_RS14185 -1.7 -2.7 transcription elongation factor GreA compare
BPHYT_RS02690 -1.7 -7.9 protoheme IX farnesyltransferase compare
BPHYT_RS19785 -1.7 -1.8 chemotaxis protein CheY compare
BPHYT_RS26510 -1.7 -1.8 transcriptional regulator compare
BPHYT_RS30995 -1.7 -1.1 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS17095 -1.7 -2.9 proline--tRNA ligase compare
BPHYT_RS16085 -1.7 -3.1 DeoR faimly transcriptional regulator compare
BPHYT_RS09330 -1.7 -8.0 phytoene synthase compare
BPHYT_RS16340 -1.6 -5.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS01660 -1.6 -2.5 hypothetical protein compare
BPHYT_RS13645 -1.6 -11.8 threonine--tRNA ligase compare
BPHYT_RS24820 -1.6 -4.4 cobyrinic acid a,c-diamide synthase compare
BPHYT_RS17445 -1.6 -4.1 GTP-binding protein YchF compare
BPHYT_RS18705 -1.6 -1.9 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS33580 -1.6 -4.3 geranyltranstransferase compare
BPHYT_RS25500 -1.6 -1.2 hypothetical protein compare
BPHYT_RS02285 -1.6 -3.9 cell division protein compare
BPHYT_RS06075 -1.6 -6.6 hypothetical protein compare
BPHYT_RS16345 -1.5 -4.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS13080 -1.5 -2.2 hypothetical protein compare
BPHYT_RS15415 -1.5 -9.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS25005 -1.5 -1.7 FMN reductase compare
BPHYT_RS32830 -1.5 -2.1 AraC family transcriptional regulator compare
BPHYT_RS18340 -1.5 -1.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS02640 -1.5 -8.6 cytochrome C oxidase compare
BPHYT_RS26390 -1.5 -1.2 antibiotic resistance protein compare
BPHYT_RS04820 -1.5 -4.7 LysR family transcriptional regulator compare
BPHYT_RS08950 -1.5 -3.5 aminotransferase compare
BPHYT_RS15890 -1.5 -1.4 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS17530 -1.5 -5.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS03570 -1.5 -5.1 heat-inducible transcription repressor HrcA compare
BPHYT_RS15620 -1.4 -2.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS04750 -1.4 -2.7 uroporphyrin-III C-methyltransferase compare
BPHYT_RS35480 -1.4 -2.0 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS18765 -1.4 -6.4 flagellar biosynthesis protein FliS compare
BPHYT_RS14395 -1.4 -4.9 sugar dehydratase compare
BPHYT_RS19565 -1.4 -7.4 gamma-glutamyl:cysteine ligase compare
BPHYT_RS09160 -1.4 -4.1 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS02975 -1.4 -3.0 membrane protein compare
BPHYT_RS08125 -1.4 -7.2 ATPase compare
BPHYT_RS11635 -1.4 -1.0 RNA polymerase subunit sigma-24 compare
BPHYT_RS16435 -1.4 -8.4 alcohol dehydrogenase compare
BPHYT_RS10095 -1.4 -1.9 integrase compare
BPHYT_RS14755 -1.4 -3.2 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS29520 -1.4 -1.2 hypothetical protein compare
BPHYT_RS36570 -1.4 -1.1 histone compare
BPHYT_RS09650 -1.3 -2.1 hypothetical protein compare
BPHYT_RS04385 -1.3 -2.4 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS25370 -1.3 -2.6 acyl-CoA dehydrogenase compare
BPHYT_RS06530 -1.3 -1.8 membrane protein compare
BPHYT_RS32225 -1.3 -1.3 hypothetical protein compare
BPHYT_RS08945 -1.3 -5.0 hypothetical protein compare
BPHYT_RS15570 -1.3 -5.5 NAD-dependent dehydratase compare
BPHYT_RS16430 -1.3 -9.3 cytochrome C compare
BPHYT_RS10925 -1.3 -1.6 aldehyde dehydrogenase compare
BPHYT_RS02525 -1.2 -6.4 membrane protein compare
BPHYT_RS06065 -1.2 -6.4 cytochrome C compare
BPHYT_RS08245 -1.2 -4.5 anti-sigma factor compare
BPHYT_RS02965 -1.2 -1.9 membrane protein compare
BPHYT_RS18710 -1.2 -1.5 membrane protein compare
BPHYT_RS27410 -1.2 -1.8 amidohydrolase compare
BPHYT_RS20665 -1.2 -1.0 LysR family transcriptional regulator compare
BPHYT_RS31910 -1.2 -1.9 hypothetical protein compare
BPHYT_RS12265 -1.2 -1.2 alanine acetyltransferase compare
BPHYT_RS12725 -1.2 -6.8 regulator compare
BPHYT_RS36215 -1.2 -3.0 hypothetical protein compare
BPHYT_RS30140 -1.2 -1.9 3-methylitaconate isomerase compare
BPHYT_RS34410 -1.2 -1.4 hypothetical protein compare
BPHYT_RS02665 -1.2 -6.3 MFS transporter compare
BPHYT_RS03875 -1.2 -1.6 dehydrogenase compare
BPHYT_RS09155 -1.2 -4.8 3-ketoacyl-ACP reductase compare
BPHYT_RS33460 -1.2 -0.9 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS17525 -1.2 -2.3 glutaredoxin compare
BPHYT_RS06990 -1.1 -1.7 membrane protein compare


Specific Phenotypes

For 1 genes in this experiment