Experiment set5IT077 for Rhodanobacter denitrificans FW104-10B01

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casamino acids 2 mg/mL

200 most important genes:

  gene name fitness t score description  
LRK54_RS01340 -4.4 -12.9 amidophosphoribosyltransferase compare
LRK54_RS16870 -4.3 -20.6 phosphoenolpyruvate synthase compare
LRK54_RS05765 -4.2 -7.5 fructose-bisphosphate aldolase class I compare
LRK54_RS02275 -4.1 -6.2 enoyl-CoA hydratase-related protein compare
LRK54_RS10165 -4.1 -16.1 phosphoribosylamine--glycine ligase compare
LRK54_RS04585 -4.0 -5.5 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS11375 -3.9 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS12710 -3.8 -11.5 DNA starvation/stationary phase protection protein compare
LRK54_RS05740 -3.6 -4.3 phosphoglycerate kinase compare
LRK54_RS00305 -3.6 -10.5 asparagine synthase B compare
LRK54_RS09805 -3.5 -2.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS16940 -3.4 -6.1 RNA polymerase sigma factor RpoE compare
LRK54_RS05785 -3.4 -6.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS00675 -3.3 -11.7 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS12975 -3.2 -3.8 hemolysin family protein compare
LRK54_RS04720 -3.2 -7.0 phosphoribosylformylglycinamidine synthase compare
LRK54_RS12945 -3.2 -7.9 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS17505 -3.1 -5.2 preprotein translocase subunit SecG compare
LRK54_RS03125 -3.1 -2.1 preprotein translocase subunit YajC compare
LRK54_RS00670 -3.0 -6.0 OmpA family protein compare
LRK54_RS13710 -3.0 -5.0 CBS domain-containing protein compare
LRK54_RS02285 -2.9 -15.9 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS00440 -2.9 -9.5 high frequency lysogenization protein HflD compare
LRK54_RS03290 -2.9 -2.0 RIP metalloprotease RseP compare
LRK54_RS16615 -2.9 -2.7 phosphopyruvate hydratase compare
LRK54_RS11170 -2.8 -4.3 NADP-dependent malic enzyme compare
LRK54_RS05550 -2.8 -1.9 FAD-binding protein compare
LRK54_RS05415 -2.8 -9.9 TetR/AcrR family transcriptional regulator compare
LRK54_RS12860 -2.8 -6.9 RNase adapter RapZ compare
LRK54_RS06470 -2.8 -10.7 carboxy terminal-processing peptidase compare
LRK54_RS11975 -2.8 -7.0 SLC13 family permease compare
LRK54_RS16755 -2.7 -5.8 SurA N-terminal domain-containing protein compare
LRK54_RS02325 -2.7 -4.3 SDR family oxidoreductase compare
LRK54_RS00690 -2.7 -14.8 2-methylcitrate synthase compare
LRK54_RS00695 -2.7 -7.0 methylisocitrate lyase compare
LRK54_RS05980 -2.6 -1.8 ATP-binding protein compare
LRK54_RS12460 -2.6 -3.5 hypothetical protein compare
LRK54_RS15035 -2.6 -7.7 M48 family metalloprotease compare
LRK54_RS13760 -2.6 -10.8 trypsin-like peptidase domain-containing protein compare
LRK54_RS05985 -2.5 -1.8 response regulator transcription factor compare
LRK54_RS02090 -2.5 -16.8 NAD-glutamate dehydrogenase compare
LRK54_RS14590 -2.5 -8.9 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS16945 -2.5 -5.0 sigma-E factor negative regulatory protein compare
LRK54_RS16730 -2.4 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS03675 -2.4 -1.7 redox-regulated ATPase YchF compare
LRK54_RS02855 -2.4 -6.2 type I restriction-modification system subunit M compare
LRK54_RS14825 -2.4 -6.3 protease HtpX compare
LRK54_RS02185 -2.4 -5.2 exodeoxyribonuclease V subunit alpha compare
LRK54_RS06425 -2.3 -2.6 ribonucleoside-diphosphate reductase compare
LRK54_RS00635 -2.2 -2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS15265 -2.2 -12.4 acetyl-CoA C-acyltransferase compare
LRK54_RS06415 -2.2 -1.5 hypothetical protein compare
LRK54_RS00615 -2.2 -9.6 protease modulator HflC compare
LRK54_RS16735 -2.2 -14.7 endopeptidase La compare
LRK54_RS12865 -2.2 -9.7 HPr(Ser) kinase/phosphatase compare
LRK54_RS00080 -2.1 -11.4 helix-turn-helix domain-containing protein compare
LRK54_RS02895 -2.1 -13.5 rhomboid family intramembrane serine protease compare
LRK54_RS11570 -2.1 -5.3 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS17270 -2.1 -4.7 DNA translocase FtsK compare
LRK54_RS07980 -2.1 -2.0 nitrogen regulation protein NR(I) compare
LRK54_RS00620 -2.1 -11.7 FtsH protease activity modulator HflK compare
LRK54_RS05735 -2.1 -11.7 maleylacetoacetate isomerase compare
LRK54_RS18050 -2.0 -13.6 lipopolysaccharide assembly protein LapB compare
LRK54_RS01685 -2.0 -12.2 tryptophan synthase subunit beta compare
LRK54_RS09280 -2.0 -19.1 TonB-dependent receptor compare
LRK54_RS05530 -2.0 -6.7 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS11565 -1.9 -4.6 anthranilate phosphoribosyltransferase compare
LRK54_RS02070 -1.9 -5.8 acyl-CoA dehydrogenase family protein compare
LRK54_RS00085 -1.9 -2.5 tetratricopeptide repeat protein compare
LRK54_RS06420 -1.9 -2.5 hypothetical protein compare
LRK54_RS06785 -1.9 -2.2 protein-disulfide reductase DsbD compare
LRK54_RS12875 -1.9 -7.9 RNA polymerase factor sigma-54 compare
LRK54_RS16660 -1.9 -10.8 VTT domain-containing protein compare
LRK54_RS03110 -1.9 -10.3 nucleotidyltransferase family protein compare
LRK54_RS04630 -1.9 -2.7 energy-dependent translational throttle protein EttA compare
LRK54_RS04350 -1.8 -6.7 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS11175 -1.8 -7.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS02180 -1.8 -7.5 UvrD-helicase domain-containing protein compare
LRK54_RS11290 -1.8 -2.6 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS01680 -1.8 -7.3 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS04765 -1.8 -11.0 LysR substrate-binding domain-containing protein compare
LRK54_RS05655 -1.8 -4.5 ABC transporter permease compare
LRK54_RS05200 -1.7 -3.2 hypothetical protein compare
LRK54_RS02175 -1.7 -8.8 exodeoxyribonuclease V subunit gamma compare
LRK54_RS05650 -1.7 -6.1 ABC transporter ATP-binding protein compare
LRK54_RS05285 -1.7 -13.2 APC family permease compare
LRK54_RS00430 -1.7 -2.7 NUDIX hydrolase compare
LRK54_RS07215 -1.7 -5.4 cytochrome c4 compare
LRK54_RS05255 -1.6 -11.6 L-serine ammonia-lyase compare
LRK54_RS16955 -1.6 -10.7 translation elongation factor 4 compare
LRK54_RS12855 -1.6 -5.7 PTS fructose transporter subunit IIA compare
LRK54_RS06840 -1.5 -13.2 DNA polymerase I compare
LRK54_RS16930 -1.5 -8.8 hypothetical protein compare
LRK54_RS06885 -1.5 -6.8 rhodanese-like domain-containing protein compare
LRK54_RS17025 -1.5 -1.8 cold-shock protein compare
LRK54_RS09200 -1.5 -10.5 MFS transporter compare
LRK54_RS12295 -1.5 -4.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS02535 -1.5 -6.0 50S ribosomal protein L9 compare
LRK54_RS02440 -1.4 -2.4 RNA polymerase-binding protein DksA compare
LRK54_RS12300 -1.4 -5.5 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS01520 -1.4 -10.9 amino acid permease compare
LRK54_RS09210 -1.4 -7.0 anhydro-N-acetylmuramic acid kinase compare
LRK54_RS03105 -1.4 -9.5 phosphotransferase compare
LRK54_RS08365 -1.3 -10.8 class 1 fructose-bisphosphatase conserved
LRK54_RS03405 -1.3 -7.6 ribonuclease G compare
LRK54_RS00805 -1.3 -3.7 segregation/condensation protein A compare
LRK54_RS08625 -1.3 -11.0 exodeoxyribonuclease III compare
LRK54_RS15165 -1.3 -3.7 enoyl-CoA hydratase-related protein compare
LRK54_RS02495 -1.3 -5.2 50S ribosomal protein L19 compare
LRK54_RS11415 -1.2 -9.3 anthranilate synthase component I compare
LRK54_RS06755 -1.2 -10.3 LTA synthase family protein compare
LRK54_RS04260 -1.2 -5.2 pyrroline-5-carboxylate reductase compare
LRK54_RS02460 -1.2 -7.5 phosphoglycolate phosphatase compare
LRK54_RS12670 -1.1 -6.9 glycosyltransferase compare
LRK54_RS16935 -1.1 -8.6 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS15765 -1.1 -1.3 hypothetical protein compare
LRK54_RS07085 -1.1 -9.6 heme o synthase compare
LRK54_RS07985 -1.1 -2.9 ATP-binding protein compare
LRK54_RS11385 -1.1 -4.0 co-chaperone DjlA compare
LRK54_RS14695 -1.1 -8.1 rhomboid family intramembrane serine protease compare
LRK54_RS16110 -1.1 -7.3 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS10005 -1.1 -3.2 general secretion pathway protein GspN compare
LRK54_RS11745 -1.1 -6.4 ribonuclease PH compare
LRK54_RS11560 -1.0 -2.8 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS04305 -1.0 -2.7 shikimate kinase compare
LRK54_RS11820 -1.0 -8.0 citrate synthase compare
LRK54_RS12200 -1.0 -4.6 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS06515 -1.0 -3.0 rod shape-determining protein MreD compare
LRK54_RS17900 -1.0 -2.0 4a-hydroxytetrahydrobiopterin dehydratase compare
LRK54_RS13780 -1.0 -4.5 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS16720 -1.0 -5.2 trigger factor compare
LRK54_RS11130 -1.0 -7.8 tetratricopeptide repeat-containing sulfotransferase family protein compare
LRK54_RS09820 -1.0 -7.6 cell division protein ZapE compare
LRK54_RS00970 -1.0 -7.8 YhdH/YhfP family quinone oxidoreductase compare
LRK54_RS13830 -0.9 -5.4 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS10485 -0.9 -4.0 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS05630 -0.9 -5.2 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS02550 -0.9 -2.0 iron-sulfur cluster assembly accessory protein compare
LRK54_RS09910 -0.9 -7.1 NADP-dependent isocitrate dehydrogenase compare
LRK54_RS07130 -0.9 -2.5 DUF2244 domain-containing protein compare
LRK54_RS15090 -0.9 -4.2 hypothetical protein compare
LRK54_RS14670 -0.9 -1.1 NrsF family protein compare
LRK54_RS09945 -0.9 -4.5 class I SAM-dependent methyltransferase compare
LRK54_RS14980 -0.9 -5.1 recombinase RecA compare
LRK54_RS09865 -0.9 -1.6 CRISPR-associated endonuclease Cas2 compare
LRK54_RS07120 -0.9 -7.8 cytochrome c oxidase subunit I compare
LRK54_RS17160 -0.9 -1.5 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS16150 -0.9 -1.3 cell wall hydrolase compare
LRK54_RS12590 -0.9 -6.6 molybdopterin-dependent oxidoreductase compare
LRK54_RS05990 -0.8 -4.8 hypothetical protein compare
LRK54_RS05610 -0.8 -5.3 GtrA family protein compare
LRK54_RS08595 -0.8 -4.9 shikimate dehydrogenase compare
LRK54_RS04615 -0.8 -3.2 transcriptional regulator NrdR compare
LRK54_RS13625 -0.8 -2.3 flagellar hook-length control protein FliK compare
LRK54_RS00775 -0.8 -5.5 translational GTPase TypA compare
LRK54_RS03925 -0.8 -6.4 glycosyltransferase family 4 protein compare
LRK54_RS12005 -0.8 -4.5 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS07830 -0.8 -7.1 TonB-dependent vitamin B12 receptor compare
LRK54_RS16655 -0.8 -1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS17060 -0.8 -2.4 RidA family protein compare
LRK54_RS16140 -0.8 -5.0 glycine zipper 2TM domain-containing protein compare
LRK54_RS00680 -0.8 -5.4 TerC family protein compare
LRK54_RS03875 -0.8 -6.8 pilin compare
LRK54_RS09345 -0.8 -1.1 ATP-binding protein compare
LRK54_RS10510 -0.8 -3.8 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK54_RS07220 -0.7 -3.9 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS11230 -0.7 -1.3 universal stress protein compare
LRK54_RS17915 -0.7 -6.7 cytochrome c compare
LRK54_RS10075 -0.7 -1.7 tetratricopeptide repeat protein compare
LRK54_RS08200 -0.7 -2.7 nucleotidyltransferase domain-containing protein compare
LRK54_RS05535 -0.7 -3.7 glycosyltransferase family 2 protein compare
LRK54_RS17910 -0.7 -6.5 cytochrome c compare
LRK54_RS05845 -0.7 -5.6 homogentisate 1,2-dioxygenase compare
LRK54_RS17760 -0.7 -1.9 cation transporter compare
LRK54_RS06865 -0.7 -4.9 uroporphyrinogen-III C-methyltransferase compare
LRK54_RS12520 -0.7 -4.3 hypothetical protein compare
LRK54_RS06860 -0.7 -5.3 hypothetical protein compare
LRK54_RS07125 -0.7 -5.8 cytochrome c oxidase subunit II compare
LRK54_RS04625 -0.7 -5.4 serine hydroxymethyltransferase compare
LRK54_RS05500 -0.7 -1.5 hypothetical protein compare
LRK54_RS05660 -0.7 -4.2 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS00435 -0.7 -5.8 tRNA 2-thiouridine(34) synthase MnmA compare
LRK54_RS07095 -0.7 -4.9 hypothetical protein compare
LRK54_RS08930 -0.7 -2.6 XRE family transcriptional regulator compare
LRK54_RS07090 -0.7 -5.7 COX15/CtaA family protein compare
LRK54_RS06875 -0.7 -0.8 YiiD C-terminal domain-containing protein compare
LRK54_RS14775 -0.7 -4.2 cold-shock protein compare
LRK54_RS12595 -0.7 -2.8 (2Fe-2S)-binding protein compare
LRK54_RS07100 -0.7 -5.8 SURF1 family protein compare
LRK54_RS06720 -0.7 -5.0 glycosyltransferase compare
LRK54_RS14460 -0.6 -4.0 septum site-determining protein MinD compare
LRK54_RS10150 -0.6 -1.2 DNA topoisomerase I compare
LRK54_RS10845 -0.6 -3.8 50S ribosomal protein L33 compare
LRK54_RS10940 -0.6 -4.6 uracil-DNA glycosylase compare
LRK54_RS00975 -0.6 -3.2 twitching motility response regulator PilH compare
LRK54_RS17895 -0.6 -4.3 RluA family pseudouridine synthase compare
LRK54_RS17205 -0.6 -2.3 heavy metal translocating P-type ATPase compare
LRK54_RS12515 -0.6 -4.9 hypothetical protein compare
LRK54_RS15105 -0.6 -3.0 polynucleotide adenylyltransferase PcnB compare
LRK54_RS03915 -0.6 -4.5 glycosyltransferase family 2 protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source casamino acids in Rhodanobacter denitrificans FW104-10B01

For carbon source casamino acids across organisms