Experiment set5IT077 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Anaerobic_120MIN_ZN12B

200 most important genes:

  gene name fitness t score description  
CSW01_01300 -2.8 -5.0 sugar ABC transporter compare
CSW01_01295 -2.6 -1.7 ABC transporter permease compare
CSW01_13420 -2.3 -3.9 elongation factor P--(R)-beta-lysine ligase compare
CSW01_05575 -2.3 -4.4 phosphate acetyltransferase compare
CSW01_18350 -2.0 -1.3 cell division protein DedD compare
CSW01_08450 -2.0 -2.8 antimicrobial peptide ABC transporter permease SapB compare
CSW01_13805 -1.8 -4.1 Hsp33 family molecular chaperone HslO compare
CSW01_09245 -1.5 -4.9 Holliday junction branch migration protein RuvA compare
CSW01_04375 -1.5 -4.6 SsrA-binding protein compare
CSW01_09365 -1.3 -4.1 pyruvate formate lyase 1-activating protein compare
CSW01_04650 -1.2 -1.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_09350 -1.2 -8.8 formate C-acetyltransferase compare
CSW01_07190 -1.2 -3.8 transcriptional regulator FNR compare
CSW01_02890 -1.2 -6.6 aspartate kinase compare
CSW01_08705 -1.2 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_09525 -1.2 -0.7 DNA translocase FtsK compare
CSW01_09240 -1.2 -3.4 Holliday junction branch migration DNA helicase RuvB compare
CSW01_11535 -1.2 -4.1 thiamine-phosphate kinase compare
CSW01_03870 -1.2 -1.6 inositol monophosphatase compare
CSW01_03410 -1.1 -2.2 polyribonucleotide nucleotidyltransferase compare
CSW01_10190 -1.1 -3.8 nucleoid-associated protein compare
CSW01_00560 -1.1 -2.9 DNA polymerase I compare
CSW01_17525 -1.1 -1.7 hypothetical protein compare
CSW01_13285 -1.1 -2.5 ribulose-phosphate 3-epimerase compare
CSW01_16325 -1.1 -1.8 hypothetical protein compare
CSW01_14680 -1.0 -1.6 aminotransferase compare
CSW01_12365 -1.0 -2.6 inorganic phosphate transporter compare
CSW01_11670 -1.0 -1.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_09660 -1.0 -2.3 hypothetical protein compare
CSW01_03790 -0.9 -2.4 phosphate ABC transporter, permease protein PstA compare
CSW01_03985 -0.9 -3.0 GMP synthase (glutamine-hydrolyzing) compare
CSW01_13300 -0.9 -4.4 3-dehydroquinate synthase compare
CSW01_03795 -0.9 -1.2 phosphate ABC transporter ATP-binding protein compare
CSW01_01490 -0.9 -2.7 Fis family transcriptional regulator compare
CSW01_11565 -0.9 -1.5 transcriptional regulator NrdR compare
CSW01_10390 -0.9 -3.0 ferrous iron transport protein A compare
CSW01_13305 -0.9 -1.6 shikimate kinase compare
CSW01_01015 -0.9 -6.4 DNA helicase II compare
CSW01_05195 -0.9 -3.1 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_08630 -0.8 -3.7 condensin subunit F compare
CSW01_15310 -0.8 -2.6 exoribonuclease R compare
CSW01_02450 -0.8 -4.8 pyrroline-5-carboxylate reductase compare
CSW01_10485 -0.8 -1.3 DUF2788 domain-containing protein compare
CSW01_15730 -0.8 -1.0 VOC family protein compare
CSW01_14055 -0.8 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_03475 -0.8 -3.2 ATP-dependent RNA helicase SrmB compare
CSW01_00650 -0.8 -4.2 tyrosine recombinase XerC compare
CSW01_16310 -0.8 -1.4 DUF3709 domain-containing protein compare
CSW01_03075 -0.8 -2.6 phosphoheptose isomerase compare
CSW01_05275 -0.8 -1.4 hypothetical protein compare
CSW01_17855 -0.8 -5.0 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_10165 -0.8 -6.0 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_03155 -0.8 -4.1 RNA polymerase-binding transcription factor DksA compare
CSW01_08620 -0.7 -5.0 chromosome partition protein MukB compare
CSW01_05380 -0.7 -1.5 YkgJ family cysteine cluster protein compare
CSW01_12250 -0.7 -3.7 site-specific tyrosine recombinase XerD compare
CSW01_14910 -0.7 -1.0 cold-shock protein compare
CSW01_16590 -0.7 -1.2 N-acetyltransferase compare
CSW01_11785 -0.7 -0.8 exonuclease V subunit gamma compare
CSW01_07720 -0.7 -1.1 DUF3802 domain-containing protein compare
CSW01_18525 -0.7 -1.2 integrase compare
CSW01_09620 -0.7 -2.3 trigger factor compare
CSW01_08730 -0.7 -2.4 phage-shock protein compare
CSW01_08935 -0.7 -1.2 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_03785 -0.7 -1.7 phosphate ABC transporter permease compare
CSW01_05020 -0.7 -1.9 regulatory protein ToxS compare
CSW01_02940 -0.7 -2.4 oxaloacetate decarboxylase subunit gamma compare
CSW01_10565 -0.7 -2.6 hypothetical protein compare
CSW01_07820 -0.7 -1.6 RidA family protein compare
CSW01_05265 -0.7 -0.8 methionine--tRNA ligase compare
CSW01_18310 -0.7 -1.2 hypothetical protein compare
CSW01_15680 -0.7 -2.0 DUF3265 domain-containing protein compare
CSW01_10560 -0.7 -2.6 chorismate synthase compare
CSW01_10385 -0.7 -4.3 Fe(2+) transporter permease subunit FeoB compare
CSW01_10260 -0.6 -1.4 thiol:disulfide interchange protein DsbE compare
CSW01_12320 -0.6 -1.2 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_04820 -0.6 -3.9 serine hydroxymethyltransferase compare
CSW01_08675 -0.6 -0.8 DUF2007 domain-containing protein compare
CSW01_06415 -0.6 -1.3 MBL fold metallo-hydrolase compare
CSW01_01515 -0.6 -1.5 type II 3-dehydroquinate dehydratase compare
CSW01_04935 -0.6 -0.8 phosphocarrier protein HPr compare
CSW01_01800 -0.6 -0.8 tRNA-Met compare
CSW01_02875 -0.6 -2.6 DNA recombination/repair protein RecA compare
CSW01_15120 -0.6 -1.9 iron(III) ABC transporter permease compare
CSW01_08625 -0.6 -2.5 chromosome partition protein MukE compare
CSW01_18705 -0.6 -2.5 biopolymer transporter exbD1 compare
CSW01_08990 -0.6 -2.2 glyoxalase compare
CSW01_03975 -0.6 -2.7 exodeoxyribonuclease VII large subunit compare
CSW01_06935 -0.6 -1.5 exonuclease compare
CSW01_14060 -0.6 -2.6 hypothetical protein compare
CSW01_04490 -0.6 -1.9 DUF533 domain-containing protein compare
CSW01_16785 -0.6 -1.6 hypothetical protein compare
CSW01_04660 -0.5 -4.1 PTS trehalose transporter subunit IIBC compare
CSW01_05890 -0.5 -2.7 hypothetical protein compare
CSW01_05580 -0.5 -2.1 acetate kinase compare
CSW01_00615 -0.5 -1.5 hypothetical protein compare
CSW01_09485 -0.5 -1.7 DUF1425 domain-containing protein compare
CSW01_15005 -0.5 -1.8 HNH endonuclease compare
CSW01_14455 -0.5 -1.6 hypothetical protein compare
CSW01_06970 -0.5 -1.4 DUF2256 domain-containing protein compare
CSW01_12005 -0.5 -1.0 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_04850 -0.5 -2.4 septal ring lytic transglycosylase RlpA compare
CSW01_11415 -0.5 -2.5 phenolic acid decarboxylase compare
CSW01_08125 -0.5 -1.2 glutaredoxin family protein compare
CSW01_11020 -0.5 -2.5 molecular chaperone DnaK compare
CSW01_11690 -0.5 -3.4 hypothetical protein compare
CSW01_11730 -0.5 -1.1 2-dehydropantoate 2-reductase compare
CSW01_12895 -0.5 -2.1 gamma-glutamylcyclotransferase compare
CSW01_00540 -0.5 -1.3 hypothetical protein compare
CSW01_10875 -0.5 -1.4 redox-regulated ATPase YchF compare
CSW01_11725 -0.5 -2.2 hypothetical protein compare
CSW01_09970 -0.5 -2.6 peptide-methionine (R)-S-oxide reductase compare
CSW01_13565 -0.5 -1.9 cell division protein ZapB compare
CSW01_02670 -0.5 -2.0 hypothetical protein compare
CSW01_19510 -0.5 -1.1 anti-sigma factor antagonist compare
CSW01_17030 -0.5 -1.9 competence protein ComFB compare
CSW01_07435 -0.5 -0.8 hypothetical protein compare
CSW01_00005 -0.5 -1.4 hypothetical protein compare
CSW01_15000 -0.5 -1.2 rfbP protein compare
CSW01_14310 -0.5 -2.9 DUF1722 domain-containing protein compare
CSW01_07770 -0.5 -1.7 MotA/TolQ/ExbB proton channel family protein compare
CSW01_00380 -0.5 -0.5 hypothetical protein compare
CSW01_05480 -0.5 -1.3 hypothetical protein compare
CSW01_11780 -0.5 -0.6 exodeoxyribonuclease V subunit beta compare
CSW01_04355 -0.5 -2.0 preprotein translocase compare
CSW01_07200 -0.5 -0.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_14965 -0.5 -1.6 hypothetical protein compare
CSW01_15990 -0.5 -1.7 hypothetical protein compare
CSW01_19600 -0.5 -2.5 hypothetical protein compare
CSW01_07140 -0.5 -1.9 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_12680 -0.4 -2.6 cytosol aminopeptidase compare
CSW01_02315 -0.4 -3.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_14125 -0.4 -2.1 1,4-alpha-glucan branching enzyme compare
CSW01_08980 -0.4 -1.3 hypothetical protein compare
CSW01_00015 -0.4 -0.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_14235 -0.4 -1.9 copper chaperone PCu(A)C compare
CSW01_17410 -0.4 -1.8 transporter compare
CSW01_07145 -0.4 -0.9 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_08665 -0.4 -1.0 DNA transformation protein compare
CSW01_06610 -0.4 -1.7 30S ribosomal protein S5 alanine N-acetyltransferase compare
CSW01_12815 -0.4 -2.3 RNA polymerase sigma-54 factor compare
CSW01_09045 -0.4 -1.8 hypothetical protein compare
CSW01_06560 -0.4 -1.9 6-carboxytetrahydropterin synthase QueD compare
CSW01_17090 -0.4 -2.2 SPOR domain-containing protein compare
CSW01_17780 -0.4 -1.3 hypothetical protein compare
CSW01_12465 -0.4 -1.8 elongation factor 4 compare
CSW01_04315 -0.4 -2.1 TCP pilus virulence regulatory protein compare
CSW01_18060 -0.4 -1.2 allophanate hydrolase compare
CSW01_05315 -0.4 -1.3 RNA polymerase subunit sigma compare
CSW01_00025 -0.4 -0.6 membrane protein insertion efficiency factor YidD compare
CSW01_04390 -0.4 -0.8 outer membrane protein assembly factor BamE compare
CSW01_04515 -0.4 -1.6 50S ribosomal protein L36 compare
CSW01_15215 -0.4 -1.5 cytochrome b compare
CSW01_07715 -0.4 -1.0 lipoprotein NlpC compare
CSW01_19175 -0.4 -2.0 hypothetical protein compare
CSW01_10460 -0.4 -1.5 Nif3-like dinuclear metal center hexameric protein compare
CSW01_01245 -0.4 -1.6 lipopolysaccharide heptosyltransferase II compare
CSW01_13730 -0.4 -2.4 ADP compounds hydrolase NudE compare
CSW01_17385 -0.4 -1.0 antibiotic biosynthesis monooxygenase compare
CSW01_06990 -0.4 -1.7 QacE family quaternary ammonium compound efflux SMR transporter compare
CSW01_01440 -0.4 -3.4 lysine:cadaverine antiporter compare
CSW01_11230 -0.4 -1.5 chemotaxis protein methyltransferase 1 compare
CSW01_05370 -0.4 -0.7 YbaB/EbfC family nucleoid-associated protein compare
CSW01_05280 -0.4 -1.8 uridine kinase compare
CSW01_06870 -0.4 -1.7 7-carboxy-7-deazaguanine synthase QueE compare
CSW01_17690 -0.4 -2.7 NADH-dependent alcohol dehydrogenase compare
CSW01_17255 -0.4 -1.7 nucleoside diphosphate kinase regulator compare
CSW01_08240 -0.4 -1.1 ATP-binding protein compare
CSW01_08140 -0.4 -1.9 DUF1415 domain-containing protein compare
CSW01_18175 -0.4 -2.1 LTA synthase family protein compare
CSW01_05220 -0.4 -2.0 cyclic pyranopterin monophosphate synthase MoaC compare
CSW01_05125 -0.4 -0.8 ribonuclease T compare
CSW01_17870 -0.4 -2.1 GIY-YIG nuclease family protein compare
CSW01_00955 -0.4 -3.2 hypothetical protein compare
CSW01_17005 -0.4 -1.9 sensor domain-containing diguanylate cyclase compare
CSW01_11710 -0.4 -2.4 transcriptional regulator compare
CSW01_14790 -0.4 -1.5 hypothetical protein compare
CSW01_04930 -0.4 -1.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_09465 -0.4 -2.0 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_02265 -0.4 -1.3 arginine repressor compare
CSW01_15115 -0.4 -1.9 iron(III) ABC transporter permease compare
CSW01_09250 -0.4 -0.5 crossover junction endodeoxyribonuclease RuvC compare
CSW01_02880 -0.4 -2.0 regulatory protein RecX compare
CSW01_05990 -0.4 -1.6 agglutination protein compare
CSW01_15870 -0.4 -0.8 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_01225 -0.4 -2.1 capsular biosynthesis protein compare
CSW01_11035 -0.4 -1.7 phage virion morphogenesis protein compare
CSW01_02570 -0.4 -2.1 hypothetical protein compare
CSW01_07485 -0.4 -2.3 cell division protein ZapC compare
CSW01_02490 -0.4 -2.0 glutathione synthetase compare
CSW01_04195 -0.4 -2.5 class I SAM-dependent methyltransferase compare
CSW01_06575 -0.4 -1.2 CoA pyrophosphatase compare
CSW01_18975 -0.4 -2.5 MFS transporter compare
CSW01_09185 -0.4 -2.0 tol-pal system protein YbgF compare
CSW01_05335 -0.4 -1.9 NAD(P)H nitroreductase compare
CSW01_02580 -0.4 -1.9 DeoR/GlpR transcriptional regulator compare
CSW01_07460 -0.4 -0.7 ribosome modulation factor compare
CSW01_00095 -0.4 -0.8 hypothetical protein compare
CSW01_18330 -0.4 -1.9 drug/metabolite DMT transporter permease compare
CSW01_11760 -0.4 -1.7 DUF2850 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_anaerobic experiments

For lb_anaerobic LB across organisms