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Experiment set5IT077 for
Burkholderia phytofirmans PsJN
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No vitamins, timepoint 1
200 most important genes:
gene
name
fitness
t score
description
BPHYT
_RS17675
-5.3
-2.6
phosphoribosyl-AMP cyclohydrolase
compare
BPHYT
_RS33835
-4.9
-5.8
O-succinylhomoserine sulfhydrylase
compare
BPHYT
_RS17395
-4.8
-3.3
anthranilate synthase subunit II
compare
BPHYT
_RS33915
-4.8
-8.5
isopropylmalate isomerase
compare
BPHYT
_RS14855
-4.8
-3.2
ADP-L-glycero-D-manno-heptose-6-epimerase
compare
BPHYT
_RS02610
-4.8
-3.3
glycerol-3-phosphate dehydrogenase [NAD(P)+]
compare
BPHYT
_RS02590
-4.7
-8.4
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
compare
BPHYT
_RS09500
-4.7
-5.5
glucose-6-phosphate isomerase
compare
BPHYT
_RS33880
-4.6
-7.7
N-(5'-phosphoribosyl)anthranilate isomerase
compare
BPHYT
_RS03150
-4.6
-11.4
Phosphoglycerate dehydrogenase (EC:1.1.1.95)
(from data)
compare
BPHYT
_RS15920
-4.6
-8.2
argininosuccinate synthase
compare
BPHYT
_RS13705
-4.6
-3.1
chorismate synthase
compare
BPHYT
_RS06545
-4.5
-6.2
acetolactate synthase
compare
BPHYT
_RS17855
-4.5
-8.6
glutamate synthase
compare
BPHYT
_RS33865
-4.5
-7.4
tryptophan synthase alpha chain
compare
BPHYT
_RS01590
-4.4
-7.8
methionine biosynthesis protein MetW
compare
BPHYT
_RS14915
-4.4
-7.9
phosphoserine aminotransferase
compare
BPHYT
_RS16835
-4.4
-6.7
glyceraldehyde-3-phosphate dehydrogenase
compare
BPHYT
_RS33900
-4.4
-10.9
3-isopropylmalate dehydrogenase
compare
BPHYT
_RS18320
-4.4
-9.3
orotate phosphoribosyltransferase
compare
BPHYT
_RS17670
-4.3
-4.1
phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
(from data)
compare
BPHYT
_RS09515
-4.3
-2.9
phosphoribosylformylglycinamidine synthase
compare
BPHYT
_RS04740
-4.3
-6.4
sulfate adenylyltransferase subunit 2
compare
BPHYT
_RS17390
-4.3
-13.3
anthranilate synthase subunit I
compare
BPHYT
_RS33840
-4.2
-9.6
amidophosphoribosyltransferase
compare
BPHYT
_RS17685
-4.2
-7.4
1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16)
(from data)
compare
BPHYT
_RS14895
-4.2
-2.9
3-phosphoshikimate 1-carboxyvinyltransferase
compare
BPHYT
_RS16735
-4.2
-4.9
phosphogluconate dehydratase
compare
BPHYT
_RS33645
-4.1
-6.2
homoserine kinase
compare
BPHYT
_RS04725
-4.1
-7.3
sulfite reductase
compare
BPHYT
_RS05225
-4.1
-10.7
phosphoenolpyruvate carboxylase
compare
BPHYT
_RS17680
-4.0
-4.7
imidazole glycerol phosphate synthase subunit HisF
compare
BPHYT
_RS17690
-4.0
-10.7
imidazole glycerol phosphate synthase
compare
BPHYT
_RS15915
-4.0
-6.6
ornithine carbamoyltransferase
compare
BPHYT
_RS06555
-4.0
-6.6
ketol-acid reductoisomerase
compare
BPHYT
_RS08960
-4.0
-2.7
threonine synthase
compare
BPHYT
_RS17400
-3.9
-8.1
anthranilate phosphoribosyltransferase
compare
BPHYT
_RS33875
-3.9
-7.3
tryptophan synthase subunit alpha
compare
BPHYT
_RS18705
-3.8
-2.5
5,10-methylenetetrahydrofolate reductase
compare
BPHYT
_RS03725
-3.8
-2.5
serine hydroxymethyltransferase
compare
BPHYT
_RS14910
-3.8
-10.7
chorismate mutase
compare
BPHYT
_RS06405
-3.7
-7.0
phosphoribosylamine--glycine ligase
compare
BPHYT
_RS05010
-3.7
-5.0
RpiR family transcriptional regulator
compare
BPHYT
_RS01595
-3.7
-8.8
homoserine O-acetyltransferase
compare
BPHYT
_RS14845
-3.7
-4.3
cysteine synthase
compare
BPHYT
_RS17890
-3.7
-2.5
shikimate kinase
compare
BPHYT
_RS04745
-3.7
-2.5
sulfate adenylyltransferase
compare
BPHYT
_RS08955
-3.7
-2.5
homoserine dehydrogenase
compare
BPHYT
_RS14190
-3.6
-6.8
carbamoyl phosphate synthase large subunit
compare
BPHYT
_RS12845
-3.6
-18.3
ATPase
compare
BPHYT
_RS04955
-3.6
-3.3
methionyl-tRNA synthetase
compare
BPHYT
_RS16270
-3.5
-3.7
phosphoglycerate kinase
compare
BPHYT
_RS14195
-3.4
-3.2
carbamoyl phosphate synthase small subunit
compare
BPHYT
_RS04720
-3.4
-5.7
transcriptional regulator
compare
BPHYT
_RS06900
-3.3
-4.5
aspartate aminotransferase
compare
BPHYT
_RS12530
-3.3
-4.3
ATP phosphoribosyltransferase regulatory subunit
compare
BPHYT
_RS15650
-3.3
-12.7
quinolinate synthetase
compare
BPHYT
_RS16245
-3.3
-4.8
phosphoribosylaminoimidazole carboxylase
compare
BPHYT
_RS16905
-3.2
-6.0
orotidine 5'-phosphate decarboxylase
compare
BPHYT
_RS17715
-3.2
-6.8
ATP phosphoribosyltransferase (EC 2.4.2.17)
(from data)
compare
BPHYT
_RS06045
-3.1
-9.4
transaldolase
compare
BPHYT
_RS07325
-3.1
-1.4
GntR family transcriptional regulator
compare
BPHYT
_RS15075
-3.1
-2.8
dihydrokaempferol 4-reductase
compare
BPHYT
_RS17885
-2.9
-6.0
3-dehydroquinate synthase
compare
BPHYT
_RS06685
-2.9
-3.3
NADH:ubiquinone oxidoreductase subunit M
compare
BPHYT
_RS03640
-2.8
-3.2
phosphoribosylformylglycinamidine cyclo-ligase
compare
BPHYT
_RS17405
-2.8
-1.3
indole-3-glycerol phosphate synthase
compare
BPHYT
_RS12985
-2.8
-1.8
amino acid acetyltransferase
compare
BPHYT
_RS33905
-2.7
-1.7
3-isopropylmalate dehydratase small subunit
compare
BPHYT
_RS17700
-2.7
-3.6
imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
(from data)
compare
BPHYT
_RS05960
-2.7
-6.8
endoribonuclease L-PSP
compare
BPHYT
_RS04730
-2.7
-2.6
required for sulfate utilization, putative electron transport protein for sulfite reductase
(from data)
compare
BPHYT
_RS13220
-2.6
-7.5
phosphomethylpyrimidine synthase
compare
BPHYT
_RS04965
-2.6
-7.8
ATP-binding protein
compare
BPHYT
_RS15640
-2.6
-14.2
L-aspartate oxidase
compare
BPHYT
_RS05025
-2.5
-5.5
sugar ABC transporter substrate-binding protein
compare
BPHYT
_RS06175
-2.5
-6.2
LPS biosynthesis
compare
BPHYT
_RS06610
-2.5
-1.4
triosephosphate isomerase
compare
BPHYT
_RS35885
-2.5
-5.0
hypothetical protein
compare
BPHYT
_RS16255
-2.5
-2.4
phosphoribosylaminoimidazole-succinocarboxamide synthase
compare
BPHYT
_RS16840
-2.4
-1.7
transketolase
compare
BPHYT
_RS17520
-2.4
-7.0
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
compare
BPHYT
_RS16675
-2.4
-1.6
dihydroorotase
compare
BPHYT
_RS05030
-2.4
-3.9
sugar ABC transporter permease
compare
BPHYT
_RS05420
-2.4
-2.6
glutathione S-transferase
compare
BPHYT
_RS15645
-2.3
-8.2
nicotinate-nucleotide pyrophosphorylase
compare
BPHYT
_RS30450
-2.3
-1.8
ABC transporter permease
compare
BPHYT
_RS10100
-2.3
-3.8
dihydroxy-acid dehydratase
compare
BPHYT
_RS05020
-2.3
-4.8
glucose-6-phosphate 1-dehydrogenase
compare
BPHYT
_RS03535
-2.2
-4.7
phospho-2-dehydro-3-deoxyheptonate aldolase
compare
BPHYT
_RS23650
-2.2
-1.7
hypothetical protein
compare
BPHYT
_RS02865
-2.2
-3.7
hypothetical protein
compare
BPHYT
_RS12840
-2.2
-3.7
pyruvate dehydrogenase
compare
BPHYT
_RS31910
-2.2
-3.0
hypothetical protein
compare
BPHYT
_RS29085
-2.1
-2.6
LysR family transcriptional regulator
compare
BPHYT
_RS08850
-2.1
-1.9
transcriptional regulator
compare
BPHYT
_RS03625
-2.1
-9.0
Histidinol-phosphatase (EC:3.1.3.15)
(from data)
compare
BPHYT
_RS05040
-2.0
-5.2
sugar ABC transporter ATPase
compare
BPHYT
_RS33920
-2.0
-7.6
type II citrate synthase
compare
BPHYT
_RS05730
-1.9
-5.6
hypothetical protein
compare
BPHYT
_RS05035
-1.9
-4.5
sugar ABC transporter permease
compare
BPHYT
_RS31495
-1.9
-2.8
transposase
compare
BPHYT
_RS33805
-1.9
-1.4
hypothetical protein
compare
BPHYT
_RS09145
-1.9
-7.3
poly-beta-hydroxybutyrate polymerase
compare
BPHYT
_RS28470
-1.9
-2.2
hypothetical protein
compare
BPHYT
_RS22860
-1.9
-1.6
chemotaxis protein CheY
compare
BPHYT
_RS36365
-1.9
-2.6
hypothetical protein
compare
BPHYT
_RS01455
-1.9
-1.1
peptide deformylase
compare
BPHYT
_RS26390
-1.8
-1.4
antibiotic resistance protein
compare
BPHYT
_RS27065
-1.8
-1.9
hypothetical protein
compare
BPHYT
_RS10645
-1.8
-1.7
cyanate hydratase
compare
BPHYT
_RS30140
-1.8
-2.4
3-methylitaconate isomerase
compare
BPHYT
_RS06990
-1.8
-2.0
membrane protein
compare
BPHYT
_RS08565
-1.8
-1.0
dihydroorotate dehydrogenase
compare
BPHYT
_RS23230
-1.8
-1.3
histidine kinase
compare
BPHYT
_RS03645
-1.7
-2.6
tRNA dimethylallyltransferase
compare
BPHYT
_RS12550
-1.7
-1.0
GTP-binding protein HflX
compare
BPHYT
_RS24630
-1.7
-2.0
(2Fe-2S)-binding protein
compare
BPHYT
_RS19985
-1.6
-1.3
CoA-transferase
compare
BPHYT
_RS29250
-1.6
-1.9
dihydrodipicolinate synthase
compare
BPHYT
_RS19435
-1.6
-3.5
16S rRNA methyltransferase
compare
BPHYT
_RS12465
-1.5
-3.6
inositol monophosphatase
compare
BPHYT
_RS02905
-1.5
-11.4
RNA polymerase subunit sigma-54
compare
BPHYT
_RS12150
-1.5
-10.7
PII uridylyl-transferase
compare
BPHYT
_RS13885
-1.5
-1.8
myo-inositol 2-dehydrogenase
compare
BPHYT
_RS14900
-1.5
-2.5
prephenate dehydrogenase
compare
BPHYT
_RS06190
-1.5
-2.9
heptosyltransferase
compare
BPHYT
_RS17920
-1.4
-2.1
protein CyaY
compare
BPHYT
_RS10670
-1.4
-1.4
catechol 1,2-dioxygenase
compare
BPHYT
_RS09895
-1.4
-1.3
LysR family transcriptional regulator
compare
BPHYT
_RS34745
-1.4
-1.1
hypothetical protein
compare
BPHYT
_RS29520
-1.4
-1.1
hypothetical protein
compare
BPHYT
_RS10165
-1.4
-1.7
transcriptional regulator
compare
BPHYT
_RS28860
-1.4
-1.3
haloacid dehalogenase
compare
BPHYT
_RS23030
-1.4
-1.5
gluconate 2-dehydrogenase
compare
BPHYT
_RS07705
-1.4
-2.6
arginine succinyltransferase
compare
BPHYT
_RS25470
-1.4
-1.1
alkylhydroperoxidase
compare
BPHYT
_RS06375
-1.4
-3.7
ribonuclease
compare
BPHYT
_RS29975
-1.4
-3.4
multidrug ABC transporter ATP-binding protein
compare
BPHYT
_RS15570
-1.4
-5.7
NAD-dependent dehydratase
compare
BPHYT
_RS24500
-1.3
-1.9
histidine kinase
compare
BPHYT
_RS20840
-1.3
-2.3
beta-lactamase
compare
BPHYT
_RS34295
-1.3
-1.1
fimbrial protein
compare
BPHYT
_RS36275
-1.3
-1.3
hypothetical protein
compare
BPHYT
_RS15710
-1.3
-1.7
ATP-dependent Clp protease ATP-binding protein
compare
BPHYT
_RS15670
-1.3
-4.3
phosphoribosylglycinamide formyltransferase
compare
BPHYT
_RS34035
-1.3
-1.9
type II and III secretion system outermembrane protein, secretin
compare
BPHYT
_RS02540
-1.3
-1.7
hypothetical protein
compare
BPHYT
_RS18340
-1.3
-1.5
n-acetyl-gamma-glutamyl-phosphate reductase
compare
BPHYT
_RS25770
-1.3
-1.5
hypothetical protein
compare
BPHYT
_RS35480
-1.3
-2.6
salicylyl-CoA 5-hydroxylase
compare
BPHYT
_RS25070
-1.3
-1.3
choline ABC transporter permease
compare
BPHYT
_RS10470
-1.3
-2.0
hypothetical protein
compare
BPHYT
_RS21025
-1.3
-1.0
cation-binding protein
compare
BPHYT
_RS16215
-1.3
-3.5
sensor histidine kinase
compare
BPHYT
_RS02365
-1.2
-1.5
hypothetical protein
compare
BPHYT
_RS04385
-1.2
-2.8
nucleoside-diphosphate sugar oxidoreductase
compare
BPHYT
_RS25005
-1.2
-1.3
FMN reductase
compare
BPHYT
_RS10135
-1.2
-0.9
hypothetical protein
compare
BPHYT
_RS34490
-1.2
-0.9
hypothetical protein
compare
BPHYT
_RS22870
-1.2
-1.6
copper transporter
compare
BPHYT
_RS18255
-1.2
-2.0
phenylacetate-CoA oxygenase subunit PaaB
compare
BPHYT
_RS18765
-1.2
-5.2
flagellar biosynthesis protein FliS
compare
BPHYT
_RS14755
-1.1
-2.9
tRNA (guanine-N(1)-)-methyltransferase
compare
BPHYT
_RS08000
-1.1
-1.6
antibiotic biosynthesis monooxygenase
compare
BPHYT
_RS04865
-1.1
-2.6
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
compare
BPHYT
_RS27410
-1.1
-1.6
amidohydrolase
compare
BPHYT
_RS32870
-1.1
-2.1
hypothetical protein
compare
BPHYT
_RS31635
-1.1
-1.8
choline dehydrogenase
compare
BPHYT
_RS28090
-1.1
-2.6
ferredoxin
compare
BPHYT
_RS01315
-1.1
-2.3
cupin
compare
BPHYT
_RS21035
-1.1
-2.5
ABC transporter permease
compare
BPHYT
_RS17100
-1.1
-5.0
RNA pyrophosphohydrolase
compare
BPHYT
_RS35770
-1.1
-1.3
glyoxalase
compare
BPHYT
_RS28605
-1.1
-1.6
NADPH-dependent FMN reductase
compare
BPHYT
_RS26510
-1.1
-1.4
transcriptional regulator
compare
BPHYT
_RS17380
-1.1
-5.4
ribulose-phosphate 3-epimerase
compare
BPHYT
_RS28870
-1.1
-1.9
MarR family transcriptional regulator
compare
BPHYT
_RS03570
-1.1
-3.3
heat-inducible transcription repressor HrcA
compare
BPHYT
_RS14865
-1.1
-2.6
UDP-glucose 6-dehydrogenase
compare
BPHYT
_RS10400
-1.1
-0.9
taurine ABC transporter permease
compare
BPHYT
_RS03235
-1.1
-1.8
enoyl-CoA hydratase
compare
BPHYT
_RS08950
-1.1
-3.7
aminotransferase
compare
BPHYT
_RS14670
-1.1
-1.1
hypothetical protein
compare
BPHYT
_RS14185
-1.0
-1.8
transcription elongation factor GreA
compare
BPHYT
_RS12935
-1.0
-4.8
chemotaxis protein CheY
compare
BPHYT
_RS29920
-1.0
-0.8
hypothetical protein
compare
BPHYT
_RS27920
-1.0
-1.2
tricarballylate utilization protein B
compare
BPHYT
_RS10705
-1.0
-2.2
MFS transporter
compare
BPHYT
_RS28405
-1.0
-2.5
membrane protein
compare
BPHYT
_RS25980
-1.0
-1.0
urea carboxylase
compare
BPHYT
_RS23225
-1.0
-1.2
hypothetical protein
compare
BPHYT
_RS17240
-1.0
-1.3
cell division protein FtsW
compare
BPHYT
_RS20155
-1.0
-1.4
hypothetical protein
compare
BPHYT
_RS08410
-1.0
-0.8
dehydrogenase
compare
BPHYT
_RS25645
-1.0
-1.4
dehydrogenase
compare
BPHYT
_RS30610
-1.0
-1.2
major facilitator transporter
compare
BPHYT
_RS27830
-1.0
-3.0
universal stress protein A
compare
BPHYT
_RS25705
-1.0
-2.1
aldehyde dehydrogenase
compare
BPHYT
_RS32930
-1.0
-2.4
NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein
compare
Specific Phenotypes
None in this experiment
For Burkholderia phytofirmans PsJN in vitamin experiments