Experiment set5IT077 for Burkholderia phytofirmans PsJN

Compare to:

No vitamins, timepoint 1

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17675 -5.3 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33835 -4.9 -5.8 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17395 -4.8 -3.3 anthranilate synthase subunit II compare
BPHYT_RS33915 -4.8 -8.5 isopropylmalate isomerase compare
BPHYT_RS14855 -4.8 -3.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS02610 -4.8 -3.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS02590 -4.7 -8.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS09500 -4.7 -5.5 glucose-6-phosphate isomerase compare
BPHYT_RS33880 -4.6 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS03150 -4.6 -11.4 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15920 -4.6 -8.2 argininosuccinate synthase compare
BPHYT_RS13705 -4.6 -3.1 chorismate synthase compare
BPHYT_RS06545 -4.5 -6.2 acetolactate synthase compare
BPHYT_RS17855 -4.5 -8.6 glutamate synthase compare
BPHYT_RS33865 -4.5 -7.4 tryptophan synthase alpha chain compare
BPHYT_RS01590 -4.4 -7.8 methionine biosynthesis protein MetW compare
BPHYT_RS14915 -4.4 -7.9 phosphoserine aminotransferase compare
BPHYT_RS16835 -4.4 -6.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33900 -4.4 -10.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS18320 -4.4 -9.3 orotate phosphoribosyltransferase compare
BPHYT_RS17670 -4.3 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS09515 -4.3 -2.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS04740 -4.3 -6.4 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS17390 -4.3 -13.3 anthranilate synthase subunit I compare
BPHYT_RS33840 -4.2 -9.6 amidophosphoribosyltransferase compare
BPHYT_RS17685 -4.2 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS14895 -4.2 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS16735 -4.2 -4.9 phosphogluconate dehydratase compare
BPHYT_RS33645 -4.1 -6.2 homoserine kinase compare
BPHYT_RS04725 -4.1 -7.3 sulfite reductase compare
BPHYT_RS05225 -4.1 -10.7 phosphoenolpyruvate carboxylase compare
BPHYT_RS17680 -4.0 -4.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17690 -4.0 -10.7 imidazole glycerol phosphate synthase compare
BPHYT_RS15915 -4.0 -6.6 ornithine carbamoyltransferase compare
BPHYT_RS06555 -4.0 -6.6 ketol-acid reductoisomerase compare
BPHYT_RS08960 -4.0 -2.7 threonine synthase compare
BPHYT_RS17400 -3.9 -8.1 anthranilate phosphoribosyltransferase compare
BPHYT_RS33875 -3.9 -7.3 tryptophan synthase subunit alpha compare
BPHYT_RS18705 -3.8 -2.5 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS03725 -3.8 -2.5 serine hydroxymethyltransferase compare
BPHYT_RS14910 -3.8 -10.7 chorismate mutase compare
BPHYT_RS06405 -3.7 -7.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS05010 -3.7 -5.0 RpiR family transcriptional regulator compare
BPHYT_RS01595 -3.7 -8.8 homoserine O-acetyltransferase compare
BPHYT_RS14845 -3.7 -4.3 cysteine synthase compare
BPHYT_RS17890 -3.7 -2.5 shikimate kinase compare
BPHYT_RS04745 -3.7 -2.5 sulfate adenylyltransferase compare
BPHYT_RS08955 -3.7 -2.5 homoserine dehydrogenase compare
BPHYT_RS14190 -3.6 -6.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12845 -3.6 -18.3 ATPase compare
BPHYT_RS04955 -3.6 -3.3 methionyl-tRNA synthetase compare
BPHYT_RS16270 -3.5 -3.7 phosphoglycerate kinase compare
BPHYT_RS14195 -3.4 -3.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS04720 -3.4 -5.7 transcriptional regulator compare
BPHYT_RS06900 -3.3 -4.5 aspartate aminotransferase compare
BPHYT_RS12530 -3.3 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS15650 -3.3 -12.7 quinolinate synthetase compare
BPHYT_RS16245 -3.3 -4.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16905 -3.2 -6.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17715 -3.2 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS06045 -3.1 -9.4 transaldolase compare
BPHYT_RS07325 -3.1 -1.4 GntR family transcriptional regulator compare
BPHYT_RS15075 -3.1 -2.8 dihydrokaempferol 4-reductase compare
BPHYT_RS17885 -2.9 -6.0 3-dehydroquinate synthase compare
BPHYT_RS06685 -2.9 -3.3 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS03640 -2.8 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17405 -2.8 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS12985 -2.8 -1.8 amino acid acetyltransferase compare
BPHYT_RS33905 -2.7 -1.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS17700 -2.7 -3.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS05960 -2.7 -6.8 endoribonuclease L-PSP compare
BPHYT_RS04730 -2.7 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS13220 -2.6 -7.5 phosphomethylpyrimidine synthase compare
BPHYT_RS04965 -2.6 -7.8 ATP-binding protein compare
BPHYT_RS15640 -2.6 -14.2 L-aspartate oxidase compare
BPHYT_RS05025 -2.5 -5.5 sugar ABC transporter substrate-binding protein compare
BPHYT_RS06175 -2.5 -6.2 LPS biosynthesis compare
BPHYT_RS06610 -2.5 -1.4 triosephosphate isomerase compare
BPHYT_RS35885 -2.5 -5.0 hypothetical protein compare
BPHYT_RS16255 -2.5 -2.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16840 -2.4 -1.7 transketolase compare
BPHYT_RS17520 -2.4 -7.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS16675 -2.4 -1.6 dihydroorotase compare
BPHYT_RS05030 -2.4 -3.9 sugar ABC transporter permease compare
BPHYT_RS05420 -2.4 -2.6 glutathione S-transferase compare
BPHYT_RS15645 -2.3 -8.2 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS30450 -2.3 -1.8 ABC transporter permease compare
BPHYT_RS10100 -2.3 -3.8 dihydroxy-acid dehydratase compare
BPHYT_RS05020 -2.3 -4.8 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS03535 -2.2 -4.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS23650 -2.2 -1.7 hypothetical protein compare
BPHYT_RS02865 -2.2 -3.7 hypothetical protein compare
BPHYT_RS12840 -2.2 -3.7 pyruvate dehydrogenase compare
BPHYT_RS31910 -2.2 -3.0 hypothetical protein compare
BPHYT_RS29085 -2.1 -2.6 LysR family transcriptional regulator compare
BPHYT_RS08850 -2.1 -1.9 transcriptional regulator compare
BPHYT_RS03625 -2.1 -9.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS05040 -2.0 -5.2 sugar ABC transporter ATPase compare
BPHYT_RS33920 -2.0 -7.6 type II citrate synthase compare
BPHYT_RS05730 -1.9 -5.6 hypothetical protein compare
BPHYT_RS05035 -1.9 -4.5 sugar ABC transporter permease compare
BPHYT_RS31495 -1.9 -2.8 transposase compare
BPHYT_RS33805 -1.9 -1.4 hypothetical protein compare
BPHYT_RS09145 -1.9 -7.3 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS28470 -1.9 -2.2 hypothetical protein compare
BPHYT_RS22860 -1.9 -1.6 chemotaxis protein CheY compare
BPHYT_RS36365 -1.9 -2.6 hypothetical protein compare
BPHYT_RS01455 -1.9 -1.1 peptide deformylase compare
BPHYT_RS26390 -1.8 -1.4 antibiotic resistance protein compare
BPHYT_RS27065 -1.8 -1.9 hypothetical protein compare
BPHYT_RS10645 -1.8 -1.7 cyanate hydratase compare
BPHYT_RS30140 -1.8 -2.4 3-methylitaconate isomerase compare
BPHYT_RS06990 -1.8 -2.0 membrane protein compare
BPHYT_RS08565 -1.8 -1.0 dihydroorotate dehydrogenase compare
BPHYT_RS23230 -1.8 -1.3 histidine kinase compare
BPHYT_RS03645 -1.7 -2.6 tRNA dimethylallyltransferase compare
BPHYT_RS12550 -1.7 -1.0 GTP-binding protein HflX compare
BPHYT_RS24630 -1.7 -2.0 (2Fe-2S)-binding protein compare
BPHYT_RS19985 -1.6 -1.3 CoA-transferase compare
BPHYT_RS29250 -1.6 -1.9 dihydrodipicolinate synthase compare
BPHYT_RS19435 -1.6 -3.5 16S rRNA methyltransferase compare
BPHYT_RS12465 -1.5 -3.6 inositol monophosphatase compare
BPHYT_RS02905 -1.5 -11.4 RNA polymerase subunit sigma-54 compare
BPHYT_RS12150 -1.5 -10.7 PII uridylyl-transferase compare
BPHYT_RS13885 -1.5 -1.8 myo-inositol 2-dehydrogenase compare
BPHYT_RS14900 -1.5 -2.5 prephenate dehydrogenase compare
BPHYT_RS06190 -1.5 -2.9 heptosyltransferase compare
BPHYT_RS17920 -1.4 -2.1 protein CyaY compare
BPHYT_RS10670 -1.4 -1.4 catechol 1,2-dioxygenase compare
BPHYT_RS09895 -1.4 -1.3 LysR family transcriptional regulator compare
BPHYT_RS34745 -1.4 -1.1 hypothetical protein compare
BPHYT_RS29520 -1.4 -1.1 hypothetical protein compare
BPHYT_RS10165 -1.4 -1.7 transcriptional regulator compare
BPHYT_RS28860 -1.4 -1.3 haloacid dehalogenase compare
BPHYT_RS23030 -1.4 -1.5 gluconate 2-dehydrogenase compare
BPHYT_RS07705 -1.4 -2.6 arginine succinyltransferase compare
BPHYT_RS25470 -1.4 -1.1 alkylhydroperoxidase compare
BPHYT_RS06375 -1.4 -3.7 ribonuclease compare
BPHYT_RS29975 -1.4 -3.4 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS15570 -1.4 -5.7 NAD-dependent dehydratase compare
BPHYT_RS24500 -1.3 -1.9 histidine kinase compare
BPHYT_RS20840 -1.3 -2.3 beta-lactamase compare
BPHYT_RS34295 -1.3 -1.1 fimbrial protein compare
BPHYT_RS36275 -1.3 -1.3 hypothetical protein compare
BPHYT_RS15710 -1.3 -1.7 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS15670 -1.3 -4.3 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS34035 -1.3 -1.9 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS02540 -1.3 -1.7 hypothetical protein compare
BPHYT_RS18340 -1.3 -1.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS25770 -1.3 -1.5 hypothetical protein compare
BPHYT_RS35480 -1.3 -2.6 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS25070 -1.3 -1.3 choline ABC transporter permease compare
BPHYT_RS10470 -1.3 -2.0 hypothetical protein compare
BPHYT_RS21025 -1.3 -1.0 cation-binding protein compare
BPHYT_RS16215 -1.3 -3.5 sensor histidine kinase compare
BPHYT_RS02365 -1.2 -1.5 hypothetical protein compare
BPHYT_RS04385 -1.2 -2.8 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS25005 -1.2 -1.3 FMN reductase compare
BPHYT_RS10135 -1.2 -0.9 hypothetical protein compare
BPHYT_RS34490 -1.2 -0.9 hypothetical protein compare
BPHYT_RS22870 -1.2 -1.6 copper transporter compare
BPHYT_RS18255 -1.2 -2.0 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS18765 -1.2 -5.2 flagellar biosynthesis protein FliS compare
BPHYT_RS14755 -1.1 -2.9 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS08000 -1.1 -1.6 antibiotic biosynthesis monooxygenase compare
BPHYT_RS04865 -1.1 -2.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BPHYT_RS27410 -1.1 -1.6 amidohydrolase compare
BPHYT_RS32870 -1.1 -2.1 hypothetical protein compare
BPHYT_RS31635 -1.1 -1.8 choline dehydrogenase compare
BPHYT_RS28090 -1.1 -2.6 ferredoxin compare
BPHYT_RS01315 -1.1 -2.3 cupin compare
BPHYT_RS21035 -1.1 -2.5 ABC transporter permease compare
BPHYT_RS17100 -1.1 -5.0 RNA pyrophosphohydrolase compare
BPHYT_RS35770 -1.1 -1.3 glyoxalase compare
BPHYT_RS28605 -1.1 -1.6 NADPH-dependent FMN reductase compare
BPHYT_RS26510 -1.1 -1.4 transcriptional regulator compare
BPHYT_RS17380 -1.1 -5.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS28870 -1.1 -1.9 MarR family transcriptional regulator compare
BPHYT_RS03570 -1.1 -3.3 heat-inducible transcription repressor HrcA compare
BPHYT_RS14865 -1.1 -2.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS10400 -1.1 -0.9 taurine ABC transporter permease compare
BPHYT_RS03235 -1.1 -1.8 enoyl-CoA hydratase compare
BPHYT_RS08950 -1.1 -3.7 aminotransferase compare
BPHYT_RS14670 -1.1 -1.1 hypothetical protein compare
BPHYT_RS14185 -1.0 -1.8 transcription elongation factor GreA compare
BPHYT_RS12935 -1.0 -4.8 chemotaxis protein CheY compare
BPHYT_RS29920 -1.0 -0.8 hypothetical protein compare
BPHYT_RS27920 -1.0 -1.2 tricarballylate utilization protein B compare
BPHYT_RS10705 -1.0 -2.2 MFS transporter compare
BPHYT_RS28405 -1.0 -2.5 membrane protein compare
BPHYT_RS25980 -1.0 -1.0 urea carboxylase compare
BPHYT_RS23225 -1.0 -1.2 hypothetical protein compare
BPHYT_RS17240 -1.0 -1.3 cell division protein FtsW compare
BPHYT_RS20155 -1.0 -1.4 hypothetical protein compare
BPHYT_RS08410 -1.0 -0.8 dehydrogenase compare
BPHYT_RS25645 -1.0 -1.4 dehydrogenase compare
BPHYT_RS30610 -1.0 -1.2 major facilitator transporter compare
BPHYT_RS27830 -1.0 -3.0 universal stress protein A compare
BPHYT_RS25705 -1.0 -2.1 aldehyde dehydrogenase compare
BPHYT_RS32930 -1.0 -2.4 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in vitamin experiments