Experiment set5IT076 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Anaerobic_120MIN_ZN12A

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -5.3 -11.2 outer membrane protein TolC compare
CSW01_02890 -3.0 -13.4 aspartate kinase compare
CSW01_01295 -2.5 -1.7 ABC transporter permease compare
CSW01_02875 -2.2 -7.4 DNA recombination/repair protein RecA compare
CSW01_08450 -2.2 -2.7 antimicrobial peptide ABC transporter permease SapB compare
CSW01_11535 -2.1 -7.2 thiamine-phosphate kinase compare
CSW01_01300 -2.1 -4.8 sugar ABC transporter compare
CSW01_13305 -1.7 -2.8 shikimate kinase compare
CSW01_04650 -1.7 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_01015 -1.6 -10.4 DNA helicase II compare
CSW01_09240 -1.6 -4.5 Holliday junction branch migration DNA helicase RuvB compare
CSW01_03410 -1.5 -2.6 polyribonucleotide nucleotidyltransferase compare
CSW01_00560 -1.4 -2.7 DNA polymerase I compare
CSW01_03325 -1.4 -2.2 porin compare
CSW01_05575 -1.3 -3.6 phosphate acetyltransferase compare
CSW01_09620 -1.3 -3.2 trigger factor compare
CSW01_03785 -1.3 -2.8 phosphate ABC transporter permease compare
CSW01_05370 -1.3 -2.0 YbaB/EbfC family nucleoid-associated protein compare
CSW01_00540 -1.2 -1.6 hypothetical protein compare
CSW01_13805 -1.2 -3.5 Hsp33 family molecular chaperone HslO compare
CSW01_12250 -1.2 -4.8 site-specific tyrosine recombinase XerD compare
CSW01_10190 -1.2 -3.7 nucleoid-associated protein compare
CSW01_19435 -1.2 -3.0 hypothetical protein compare
CSW01_04850 -1.1 -4.2 septal ring lytic transglycosylase RlpA compare
CSW01_13420 -1.1 -2.3 elongation factor P--(R)-beta-lysine ligase compare
CSW01_09525 -1.1 -0.7 DNA translocase FtsK compare
CSW01_04375 -1.1 -2.6 SsrA-binding protein compare
CSW01_12130 -1.0 -2.6 DUF721 domain-containing protein compare
CSW01_02085 -1.0 -5.7 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_11690 -1.0 -5.7 hypothetical protein compare
CSW01_03795 -0.9 -1.1 phosphate ABC transporter ATP-binding protein compare
CSW01_06015 -0.9 -4.0 NAD-dependent malic enzyme compare
CSW01_14680 -0.9 -1.4 aminotransferase compare
CSW01_00650 -0.9 -3.7 tyrosine recombinase XerC compare
CSW01_10710 -0.9 -5.7 deferrochelatase compare
CSW01_08240 -0.9 -1.7 ATP-binding protein compare
CSW01_03790 -0.9 -2.2 phosphate ABC transporter, permease protein PstA compare
CSW01_03870 -0.9 -1.2 inositol monophosphatase compare
CSW01_17275 -0.9 -1.0 large conductance mechanosensitive channel protein MscL compare
CSW01_01265 -0.9 -2.4 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_01965 -0.9 -0.6 glucose-6-phosphate isomerase compare
CSW01_16215 -0.9 -1.4 DUF3709 domain-containing protein compare
CSW01_11255 -0.8 -3.9 flagellar biosynthesis protein FlgP compare
CSW01_01800 -0.8 -1.4 tRNA-Met compare
CSW01_03975 -0.8 -3.7 exodeoxyribonuclease VII large subunit compare
CSW01_05800 -0.8 -2.1 ATP-dependent Clp protease adaptor ClpS compare
CSW01_17525 -0.8 -1.3 hypothetical protein compare
CSW01_09315 -0.8 -2.7 exodeoxyribonuclease III compare
CSW01_07155 -0.8 -2.1 spermidine/putrescine ABC transporter permease PotB compare
CSW01_13285 -0.8 -1.9 ribulose-phosphate 3-epimerase compare
CSW01_09245 -0.8 -2.2 Holliday junction branch migration protein RuvA compare
CSW01_03155 -0.8 -4.0 RNA polymerase-binding transcription factor DksA compare
CSW01_01125 -0.8 -4.9 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_15470 -0.8 -2.2 NAD(P)-dependent oxidoreductase compare
CSW01_18350 -0.7 -0.8 cell division protein DedD compare
CSW01_11565 -0.7 -2.2 transcriptional regulator NrdR compare
CSW01_15560 -0.7 -1.6 lipocalin compare
CSW01_02755 -0.7 -1.5 glutamyl-tRNA amidotransferase compare
CSW01_17585 -0.7 -1.1 periplasmic nitrate reductase electron transfer subunit compare
CSW01_09605 -0.7 -3.6 endopeptidase La compare
CSW01_00065 -0.7 -4.3 DNA replication and repair protein RecF compare
CSW01_14910 -0.7 -1.3 cold-shock protein compare
CSW01_08125 -0.7 -1.7 glutaredoxin family protein compare
CSW01_05280 -0.7 -3.2 uridine kinase compare
CSW01_04285 -0.7 -1.2 toxin coregulated pilus biosynthesis protein R compare
CSW01_01185 -0.7 -4.1 ADP-heptose--LPS heptosyltransferase compare
CSW01_10565 -0.6 -1.5 hypothetical protein compare
CSW01_11785 -0.6 -0.9 exonuclease V subunit gamma compare
CSW01_02020 -0.6 -1.4 phosphoadenosine phosphosulfate reductase compare
CSW01_14625 -0.6 -1.1 hypothetical protein compare
CSW01_09045 -0.6 -3.5 hypothetical protein compare
CSW01_08630 -0.6 -3.0 condensin subunit F compare
CSW01_12320 -0.6 -1.2 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_05580 -0.6 -2.4 acetate kinase compare
CSW01_16030 -0.6 -1.6 DUF3709 domain-containing protein compare
CSW01_15030 -0.6 -1.6 hypothetical protein compare
CSW01_03065 -0.6 -2.0 ClpXP protease specificity-enhancing factor compare
CSW01_00450 -0.6 -1.2 SCP2 domain-containing protein compare
CSW01_10390 -0.6 -2.0 ferrous iron transport protein A compare
CSW01_06825 -0.6 -1.5 acylphosphatase compare
CSW01_06970 -0.6 -1.0 DUF2256 domain-containing protein compare
CSW01_11775 -0.6 -4.6 exodeoxyribonuclease V subunit alpha compare
CSW01_04390 -0.6 -0.8 outer membrane protein assembly factor BamE compare
CSW01_11115 -0.6 -1.7 hypothetical protein compare
CSW01_15310 -0.6 -1.9 exoribonuclease R compare
CSW01_04315 -0.6 -2.5 TCP pilus virulence regulatory protein compare
CSW01_08565 -0.6 -1.0 hypothetical protein compare
CSW01_01725 -0.6 -2.7 TetR family transcriptional regulator compare
CSW01_08625 -0.6 -1.8 chromosome partition protein MukE compare
CSW01_05025 -0.6 -2.9 transcriptional regulator compare
CSW01_12750 -0.6 -1.3 BolA family transcriptional regulator compare
CSW01_17780 -0.6 -1.4 hypothetical protein compare
CSW01_11725 -0.6 -2.5 hypothetical protein compare
CSW01_06420 -0.6 -2.2 DUF2982 domain-containing protein compare
CSW01_05240 -0.6 -2.0 CBS domain-containing protein compare
CSW01_07160 -0.6 -2.5 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_12465 -0.5 -2.2 elongation factor 4 compare
CSW01_16435 -0.5 -1.0 DUF3265 domain-containing protein compare
CSW01_02970 -0.5 -2.6 glutamate--cysteine ligase compare
CSW01_19545 -0.5 -2.6 chemotaxis protein CheW compare
CSW01_06435 -0.5 -2.4 C4-dicarboxylate ABC transporter compare
CSW01_11410 -0.5 -1.6 nitrogen regulatory protein P-II compare
CSW01_14055 -0.5 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_02450 -0.5 -3.6 pyrroline-5-carboxylate reductase compare
CSW01_05020 -0.5 -1.8 regulatory protein ToxS compare
CSW01_00330 -0.5 -2.5 fluoride efflux transporter CrcB compare
CSW01_17575 -0.5 -2.3 mycothiol reductase compare
CSW01_11755 -0.5 -3.0 murein transglycosylase compare
CSW01_05630 -0.5 -3.4 replication-associated recombination protein A compare
CSW01_17640 -0.5 -1.6 phasin family protein compare
CSW01_08435 -0.5 -2.0 phage shock protein PspA compare
CSW01_11670 -0.5 -0.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_00735 -0.5 -1.5 DUF1145 domain-containing protein compare
CSW01_01425 -0.5 -0.6 phosphoribosylamine--glycine ligase compare
CSW01_04585 -0.5 -2.2 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_08620 -0.5 -3.4 chromosome partition protein MukB compare
CSW01_08730 -0.5 -1.7 phage-shock protein compare
CSW01_14040 -0.5 -3.2 chromosome partitioning protein ParB compare
CSW01_05660 -0.5 -1.8 dethiobiotin synthase compare
CSW01_04935 -0.5 -0.6 phosphocarrier protein HPr compare
CSW01_15005 -0.5 -1.8 HNH endonuclease compare
CSW01_13650 -0.5 -1.5 DUF4212 domain-containing protein compare
CSW01_00235 -0.5 -1.8 peptide deformylase compare
CSW01_08955 -0.5 -1.0 transcriptional regulator compare
CSW01_01860 -0.5 -1.7 SlyX protein compare
CSW01_05275 -0.5 -0.8 hypothetical protein compare
CSW01_01405 -0.5 -1.6 DNA-binding protein HU-alpha compare
CSW01_11260 -0.5 -1.7 hypothetical protein compare
CSW01_15990 -0.5 -1.2 hypothetical protein compare
CSW01_15110 -0.5 -1.7 iron(III) ABC transporter substrate-binding protein compare
CSW01_15870 -0.5 -1.0 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_01350 -0.5 -4.0 polysaccharide biosynthesis protein compare
CSW01_14125 -0.5 -2.2 1,4-alpha-glucan branching enzyme compare
CSW01_18630 -0.5 -2.4 6-phosphogluconolactonase compare
CSW01_13620 -0.5 -3.6 aspartate ammonia-lyase compare
CSW01_13875 -0.5 -2.7 adenosine deaminase compare
CSW01_16285 -0.5 -1.1 acetyltransferase compare
CSW01_11525 -0.4 -1.8 hypothetical protein compare
CSW01_12005 -0.4 -1.0 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_10460 -0.4 -2.2 Nif3-like dinuclear metal center hexameric protein compare
CSW01_11325 -0.4 -2.0 DUF3149 domain-containing protein compare
CSW01_15705 -0.4 -1.1 DUF3265 domain-containing protein compare
CSW01_17370 -0.4 -1.1 hypothetical protein compare
CSW01_08680 -0.4 -2.2 alpha/beta hydrolase compare
CSW01_11915 -0.4 -1.4 hypothetical protein compare
CSW01_18090 -0.4 -2.4 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
CSW01_09915 -0.4 -1.5 starvation-inducible protein compare
CSW01_11780 -0.4 -0.7 exodeoxyribonuclease V subunit beta compare
CSW01_00495 -0.4 -0.7 SOS-response transcriptional repressor compare
CSW01_02315 -0.4 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_00615 -0.4 -1.1 hypothetical protein compare
CSW01_13680 -0.4 -3.5 DNA helicase RecG compare
CSW01_12480 -0.4 -0.8 sigma-E factor negative regulatory protein RseA compare
CSW01_16785 -0.4 -1.9 hypothetical protein compare
CSW01_12760 -0.4 -1.2 phospholipid-binding protein MlaC compare
CSW01_09965 -0.4 -2.6 DUF2989 domain-containing protein compare
CSW01_10195 -0.4 -1.0 hypothetical protein compare
CSW01_17255 -0.4 -1.2 nucleoside diphosphate kinase regulator compare
CSW01_07715 -0.4 -1.1 lipoprotein NlpC compare
CSW01_10875 -0.4 -1.3 redox-regulated ATPase YchF compare
CSW01_08255 -0.4 -1.0 ribosome recycling factor compare
CSW01_12445 -0.4 -2.2 DNA repair protein RecO compare
CSW01_01855 -0.4 -0.6 DUF2065 domain-containing protein compare
CSW01_17090 -0.4 -2.2 SPOR domain-containing protein compare
CSW01_18725 -0.4 -0.9 TetR/AcrR family transcriptional regulator compare
CSW01_10170 -0.4 -0.7 MarC family protein compare
CSW01_01195 -0.4 -0.7 ADP-heptose--LPS heptosyltransferase I compare
CSW01_03475 -0.4 -1.5 ATP-dependent RNA helicase SrmB compare
CSW01_06760 -0.4 -1.4 N-acetyltransferase compare
CSW01_17555 -0.4 -1.7 LacI family transcriptional regulator compare
CSW01_00500 -0.4 -3.3 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_19275 -0.4 -2.2 amino acid ABC transporter ATP-binding protein compare
CSW01_17495 -0.4 -2.5 glycerol-3-phosphate dehydrogenase compare
CSW01_06455 -0.4 -1.3 DNA-binding response regulator compare
CSW01_01190 -0.4 -1.9 glycosyltransferase family 2 protein compare
CSW01_17970 -0.4 -1.9 ABC transporter compare
CSW01_14790 -0.4 -2.3 hypothetical protein compare
CSW01_15060 -0.4 -1.2 hypothetical protein compare
CSW01_13300 -0.4 -2.1 3-dehydroquinate synthase compare
CSW01_19140 -0.4 -2.1 organic hydroperoxide resistance protein compare
CSW01_08515 -0.4 -1.2 trimethylamine N-oxide reductase system protein TorE compare
CSW01_14130 -0.4 -0.7 hypothetical protein compare
CSW01_09955 -0.4 -2.1 L-asparaginase 1 compare
CSW01_00280 -0.4 -2.5 shikimate dehydrogenase compare
CSW01_13340 -0.4 -2.8 DNA-binding transcriptional regulator OxyR compare
CSW01_00855 -0.4 -3.0 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_06870 -0.4 -1.4 7-carboxy-7-deazaguanine synthase QueE compare
CSW01_07460 -0.4 -0.7 ribosome modulation factor compare
CSW01_03855 -0.4 -1.6 preprotein translocase subunit YajC compare
CSW01_18060 -0.4 -1.2 allophanate hydrolase compare
CSW01_10355 -0.4 -1.5 phosphohistidine phosphatase SixA compare
CSW01_08705 -0.4 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_15860 -0.4 -0.8 DUF645 domain-containing protein compare
CSW01_15900 -0.4 -1.3 hypothetical protein compare
CSW01_04845 -0.4 -1.5 D-alanyl-D-alanine carboxypeptidase compare
CSW01_10810 -0.4 -2.2 uracil permease compare
CSW01_10245 -0.4 -1.4 ABC transporter compare
CSW01_09645 -0.4 -1.2 C4-dicarboxylate ABC transporter permease compare
CSW01_19540 -0.4 -2.0 chemotaxis protein CheW compare
CSW01_12770 -0.4 -2.2 ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_anaerobic experiments

For lb_anaerobic LB across organisms