Experiment set5IT075 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium thiosulfate pentahydrate 0.25 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3834 -4.5 -6.9 Lipoprotein NlpD compare
Pf6N2E2_5006 -4.3 -8.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4584 -4.3 -4.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3617 -4.2 -5.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5069 -3.9 -6.2 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5068 -3.7 -12.3 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3253 -3.7 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3610 -3.6 -6.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3179 -3.6 -2.5 FIG021952: putative membrane protein compare
Pf6N2E2_5160 -3.5 -2.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3839 -3.5 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4585 -3.4 -12.6 Cell division protein FtsX compare
Pf6N2E2_5544 -3.3 -8.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5342 -3.2 -3.8 21 kDa hemolysin precursor compare
Pf6N2E2_5536 -3.2 -2.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3252 -3.1 -7.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4640 -3.1 -2.1 hypothetical protein compare
Pf6N2E2_5245 -3.1 -7.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3841 -3.1 -5.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5508 -3.0 -2.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5956 -2.9 -6.4 FIG004453: protein YceG like compare
Pf6N2E2_3282 -2.8 -2.7 FIG005080: Possible exported protein compare
Pf6N2E2_5328 -2.8 -4.7 FIG00958649: hypothetical protein compare
Pf6N2E2_3661 -2.8 -3.9 hypothetical protein compare
Pf6N2E2_156 -2.7 -2.6 Carbon storage regulator compare
Pf6N2E2_3658 -2.7 -6.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4418 -2.6 -1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3833 -2.6 -5.9 hypothetical protein compare
Pf6N2E2_3782 -2.6 -4.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2824 -2.6 -9.4 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3251 -2.5 -9.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3940 -2.5 -9.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4071 -2.5 -5.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_451 -2.5 -2.9 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_2278 -2.4 -12.2 Transcription-repair coupling factor compare
Pf6N2E2_5128 -2.3 -4.1 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_2384 -2.3 -4.1 CmpX compare
Pf6N2E2_4206 -2.3 -2.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5771 -2.2 -6.8 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_4153 -2.2 -1.5 Sensory box histidine kinase compare
Pf6N2E2_2274 -2.2 -4.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2340 -2.2 -4.6 Transcriptional regulator, GntR family compare
Pf6N2E2_3941 -2.2 -3.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2514 -2.2 -4.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5677 -2.2 -1.5 Carbon storage regulator compare
Pf6N2E2_2574 -2.2 -2.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_5172 -2.2 -4.1 FOG: TPR repeat compare
Pf6N2E2_2253 -2.1 -3.7 hypothetical protein compare
Pf6N2E2_5178 -2.1 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_1099 -2.1 -2.4 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_5430 -2.1 -5.7 Transglycosylase, Slt family compare
Pf6N2E2_4803 -2.1 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3753 -2.1 -10.7 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_2320 -2.0 -2.4 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5671 -2.0 -3.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3783 -2.0 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4477 -2.0 -2.7 Z-ring-associated protein ZapA compare
Pf6N2E2_4046 -2.0 -12.9 FIG00953482: hypothetical protein compare
Pf6N2E2_3842 -2.0 -2.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_1886 -2.0 -1.9 hypothetical protein compare
Pf6N2E2_3074 -2.0 -2.0 FIG00960973: hypothetical protein compare
Pf6N2E2_2938 -2.0 -3.3 Outer membrane lipoprotein compare
Pf6N2E2_2218 -1.9 -3.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5252 -1.9 -2.0 FIG00956396: hypothetical protein compare
Pf6N2E2_2825 -1.9 -3.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2473 -1.9 -1.5 Major outer membrane lipoprotein I compare
Pf6N2E2_2318 -1.9 -6.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4416 -1.9 -2.5 Tyrosine recombinase XerC compare
Pf6N2E2_3521 -1.9 -6.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_4372 -1.8 -4.6 FIG00460773: hypothetical protein compare
Pf6N2E2_5862 -1.8 -2.2 Lipoprotein, putative compare
Pf6N2E2_4187 -1.8 -3.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2674 -1.8 -1.5 FIG00953856: hypothetical protein compare
Pf6N2E2_4159 -1.8 -3.6 Cytochrome c4 compare
Pf6N2E2_2264 -1.8 -3.6 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5346 -1.8 -3.4 rRNA small subunit methyltransferase I compare
Pf6N2E2_4369 -1.8 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5111 -1.8 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_4996 -1.8 -2.4 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_2753 -1.8 -2.0 HtrA protease/chaperone protein compare
Pf6N2E2_75 -1.7 -2.9 Colicin V production protein compare
Pf6N2E2_2754 -1.7 -2.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_5339 -1.7 -5.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2755 -1.7 -1.6 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2217 -1.7 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5338 -1.7 -6.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4352 -1.7 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2752 -1.7 -6.1 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3791 -1.7 -6.6 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3461 -1.6 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1056 -1.6 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4205 -1.6 -3.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5001 -1.6 -1.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2714 -1.6 -2.3 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_178 -1.6 -1.3 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3062 -1.6 -3.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5150 -1.6 -4.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5704 -1.6 -4.3 Transcriptional regulatory protein PhoP compare
Pf6N2E2_70 -1.6 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3569 -1.6 -1.7 hypothetical protein compare
Pf6N2E2_1450 -1.5 -1.6 FIG00960438: hypothetical protein compare
Pf6N2E2_1548 -1.5 -2.4 Lactoylglutathione lyase compare
Pf6N2E2_4993 -1.5 -2.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2344 -1.5 -6.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4943 -1.5 -1.7 PspA/IM30 family protein compare
Pf6N2E2_3243 -1.5 -8.7 FIG067310: hypothetical protein compare
Pf6N2E2_3534 -1.5 -2.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3326 -1.5 -1.9 hypothetical protein compare
Pf6N2E2_4743 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_2310 -1.5 -6.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2646 -1.5 -1.7 FIG00953416: hypothetical protein compare
Pf6N2E2_310 -1.5 -3.6 hypothetical protein compare
Pf6N2E2_5337 -1.5 -3.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3849 -1.5 -1.3 FIG00954739: hypothetical protein compare
Pf6N2E2_624 -1.5 -3.8 hypothetical protein PA3071 compare
Pf6N2E2_1034 -1.5 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3659 -1.5 -3.7 Protein fixF compare
Pf6N2E2_3257 -1.4 -2.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2506 -1.4 -7.8 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3611 -1.4 -1.3 HflC protein compare
Pf6N2E2_2201 -1.4 -3.0 Transmembrane regulator protein PrtR compare
Pf6N2E2_42 -1.4 -3.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5705 -1.4 -1.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3612 -1.4 -2.2 HflK protein compare
Pf6N2E2_2261 -1.4 -4.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_2311 -1.4 -5.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_546 -1.4 -1.8 FIG00966904: hypothetical protein compare
Pf6N2E2_953 -1.3 -1.3 FIG00958851: hypothetical protein compare
Pf6N2E2_600 -1.3 -1.9 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_625 -1.3 -3.0 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5455 -1.3 -3.0 hypothetical protein compare
Pf6N2E2_1984 -1.3 -2.1 probable exported protein STY4558 compare
Pf6N2E2_1074 -1.3 -2.0 FIG00953356: hypothetical protein compare
Pf6N2E2_1676 -1.3 -1.6 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_2114 -1.3 -1.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2513 -1.3 -2.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3792 -1.3 -3.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2219 -1.3 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_1935 -1.3 -2.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3529 -1.3 -1.7 Toxin A compare
Pf6N2E2_1652 -1.3 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2317 -1.3 -2.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_285 -1.3 -3.2 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_6064 -1.3 -3.8 2-methylaconitate isomerase compare
Pf6N2E2_5950 -1.3 -2.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_5605 -1.3 -1.6 FxsA protein compare
Pf6N2E2_3786 -1.3 -2.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_2292 -1.3 -1.8 Universal stress protein family COG0589 compare
Pf6N2E2_4988 -1.2 -3.4 Antiholin-like protein LrgA compare
Pf6N2E2_2354 -1.2 -3.3 MxiH protein; Type III secretion cytoplasmic protein (YscF) compare
Pf6N2E2_2472 -1.2 -3.5 hypothetical protein compare
Pf6N2E2_1705 -1.2 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4045 -1.2 -3.0 FIG00953248: hypothetical protein compare
Pf6N2E2_4638 -1.2 -2.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_620 -1.2 -4.8 BatD compare
Pf6N2E2_3204 -1.2 -2.5 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_3778 -1.2 -2.6 FIG00954300: hypothetical protein compare
Pf6N2E2_40 -1.2 -3.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5520 -1.2 -4.1 Sensory box histidine kinase compare
Pf6N2E2_2181 -1.2 -1.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3303 -1.2 -2.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3460 -1.2 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4417 -1.2 -2.4 Protein of unknown function DUF484 compare
Pf6N2E2_4033 -1.2 -6.6 GTP-binding protein compare
Pf6N2E2_504 -1.1 -2.3 DNA-binding response regulator compare
Pf6N2E2_2756 -1.1 -3.8 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3301 -1.1 -6.8 ABC transporter, ATP-binding protein compare
Pf6N2E2_2313 -1.1 -2.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_746 -1.1 -1.3 FIG00958097: hypothetical protein compare
Pf6N2E2_2281 -1.1 -1.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_4647 -1.1 -6.0 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_3285 -1.1 -2.5 Rod shape-determining protein MreD compare
Pf6N2E2_3607 -1.1 -5.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2527 -1.1 -2.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1043 -1.1 -3.0 Transcriptional regulator, IclR family compare
Pf6N2E2_5505 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_2823 -1.1 -2.9 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4678 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_4999 -1.1 -2.5 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4548 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_2479 -1.1 -1.5 Transcription elongation factor GreB compare
Pf6N2E2_1665 -1.1 -2.8 hypothetical protein compare
Pf6N2E2_2013 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_2510 -1.1 -2.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2282 -1.0 -2.1 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2788 -1.0 -1.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_579 -1.0 -1.2 FIG00962753: hypothetical protein compare
Pf6N2E2_3516 -1.0 -1.3 Probable transmembrane protein compare
Pf6N2E2_5103 -1.0 -1.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2675 -1.0 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5487 -1.0 -2.5 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5794 -1.0 -1.2 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4447 -1.0 -7.3 Cytochrome c family protein compare
Pf6N2E2_5733 -1.0 -2.6 NLP/P60 family protein compare
Pf6N2E2_4579 -1.0 -1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2071 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_4454 -1.0 -3.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1617 -1.0 -0.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_819 -1.0 -1.6 Response regulator compare
Pf6N2E2_248 -1.0 -4.5 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For stress Sodium thiosulfate pentahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium thiosulfate pentahydrate across organisms