Experiment set5IT075 for Pseudomonas fluorescens FW300-N2C3

Compare to:

casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
AO356_14435 -5.3 -5.2 anthranilate phosphoribosyltransferase compare
AO356_21465 -5.2 -3.6 amidophosphoribosyltransferase compare
AO356_10915 -5.0 -8.4 tryptophan synthase subunit beta compare
AO356_14440 -4.8 -4.7 indole-3-glycerol-phosphate synthase compare
AO356_21440 -4.6 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_14420 -4.3 -14.6 anthranilate synthase compare
AO356_12520 -4.3 -3.0 orotate phosphoribosyltransferase compare
AO356_19090 -4.2 -4.1 phosphoribosylaminoimidazole synthetase compare
AO356_19085 -4.2 -8.5 phosphoribosylglycinamide formyltransferase compare
AO356_10910 -4.0 -9.2 tryptophan synthase subunit alpha compare
AO356_14430 -3.9 -7.8 anthranilate synthase compare
AO356_14135 -3.7 -15.9 biotin synthase compare
AO356_16600 -3.6 -3.4 malate:quinone oxidoreductase compare
AO356_17520 -3.5 -2.4 phosphoribosylformylglycinamidine synthase compare
AO356_27180 -3.5 -4.7 hypothetical protein compare
AO356_02265 -3.2 -6.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_22795 -3.1 -5.5 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_19795 -2.9 -3.4 glycerol-3-phosphate dehydrogenase compare
AO356_07480 -2.9 -2.8 carbamoyl phosphate synthase large subunit compare
AO356_14140 -2.8 -12.5 8-amino-7-oxononanoate synthase compare
AO356_14150 -2.8 -10.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_11315 -2.7 -1.9 shikimate dehydrogenase compare
AO356_14145 -2.7 -6.9 transporter compare
AO356_01570 -2.6 -7.0 hydroxymethylglutaryl-CoA lyase compare
AO356_14155 -2.6 -8.2 dethiobiotin synthetase compare
AO356_16075 -2.5 -4.8 Fis family transcriptional regulator compare
AO356_13570 -2.5 -9.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_10185 -2.3 -8.1 glutamate--cysteine ligase compare
AO356_09795 -2.1 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
AO356_13685 -2.1 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_20155 -2.1 -6.1 phosphate acyltransferase compare
AO356_20830 -2.0 -4.4 phosphoadenosine phosphosulfate reductase compare
AO356_16435 -2.0 -3.2 hypothetical protein compare
AO356_15520 -1.9 -3.2 AsnC family transcriptional regulator compare
AO356_20175 -1.8 -1.7 3-oxoacyl-ACP synthase compare
AO356_05670 -1.8 -3.3 recombinase RecA compare
AO356_15165 -1.8 -2.6 protein cII compare
AO356_07915 -1.7 -2.7 exodeoxyribonuclease V subunit beta compare
AO356_01745 -1.6 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_08895 -1.6 -2.4 GlcNAc-PI de-N-acetylase compare
AO356_09540 -1.5 -1.9 twin-arginine protein translocation system subunit TatC compare
AO356_12730 -1.5 -3.5 hypothetical protein compare
AO356_16050 -1.5 -2.9 glucose-6-phosphate isomerase compare
AO356_08905 -1.5 -1.5 glycosyl transferase compare
AO356_07390 -1.5 -1.4 polyribonucleotide nucleotidyltransferase compare
AO356_16830 -1.5 -7.6 fumarylacetoacetase compare
AO356_02315 -1.4 -2.8 DNA topoisomerase I compare
AO356_07020 -1.4 -2.0 LPS export ABC transporter periplasmic protein LptC compare
AO356_14050 -1.3 -1.7 glutathione S-transferase compare
AO356_22995 -1.3 -2.7 ArsR family transcriptional regulator compare
AO356_17345 -1.2 -2.5 molybdenum cofactor biosynthesis protein MoaE compare
AO356_16835 -1.2 -3.8 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO356_01750 -1.2 -3.1 ATP-dependent Clp protease proteolytic subunit compare
AO356_07110 -1.2 -4.5 ribonuclease G compare
AO356_25665 -1.2 -1.7 3-beta hydroxysteroid dehydrogenase compare
AO356_18145 -1.2 -5.8 quinolinate synthase A compare
AO356_17485 -1.1 -3.7 elongation factor 4 compare
AO356_21435 -1.1 -3.7 pseudouridine synthase compare
AO356_13085 -1.1 -6.3 N-acetylglutamate synthase compare
AO356_16060 -1.1 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_27245 -1.1 -0.9 hypothetical protein compare
AO356_22710 -1.1 -3.0 ArsC family transcriptional regulator compare
AO356_20880 -1.1 -2.0 3-methylitaconate isomerase compare
AO356_10585 -1.1 -6.4 hypothetical protein compare
AO356_13475 -1.0 -3.5 glutathione synthetase compare
AO356_09810 -1.0 -4.1 imidazole glycerol phosphate synthase subunit HisH compare
AO356_26350 -1.0 -1.9 acetyl-CoA acetyltransferase compare
AO356_09800 -1.0 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_15860 -1.0 -2.0 general secretion pathway protein GspH compare
AO356_11410 -1.0 -1.9 hypothetical protein compare
AO356_15260 -1.0 -1.3 dehydratase compare
AO356_24555 -1.0 -1.9 hypothetical protein compare
AO356_21275 -1.0 -1.2 peptidase compare
AO356_28955 -0.9 -2.9 hypothetical protein compare
AO356_20875 -0.9 -4.8 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_00355 -0.9 -4.9 chemotaxis protein CheY compare
AO356_10920 -0.9 -5.5 LysR family transcriptional regulator compare
AO356_03070 -0.9 -6.4 histidine kinase compare
AO356_29515 -0.9 -1.4 energy transducer TonB compare
AO356_00385 -0.9 -1.4 peptidylprolyl isomerase compare
AO356_12725 -0.9 -3.2 recombinase XerC compare
AO356_17985 -0.9 -3.5 cold-shock protein compare
AO356_09815 -0.9 -3.4 imidazoleglycerol-phosphate dehydratase compare
AO356_04560 -0.9 -1.8 serine peptidase compare
AO356_06005 -0.9 -2.8 zinc metallopeptidase RseP compare
AO356_10140 -0.9 -5.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_03800 -0.9 -1.7 histidine kinase compare
AO356_01590 -0.9 -3.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
AO356_23815 -0.9 -4.2 amidase compare
AO356_08235 -0.9 -4.6 histidine kinase compare
AO356_28090 -0.9 -1.3 ABC transporter ATP-binding protein compare
AO356_20395 -0.9 -1.8 acetyl-CoA acetyltransferase compare
AO356_20475 -0.9 -1.9 hypothetical protein compare
AO356_03360 -0.8 -2.1 hypothetical protein compare
AO356_17555 -0.8 -1.7 GntR family transcriptional regulator compare
AO356_21460 -0.8 -1.5 colicin V production CvpA compare
AO356_20935 -0.8 -2.6 antibiotic biosynthesis monooxygenase compare
AO356_00270 -0.8 -1.9 hypothetical protein compare
AO356_12900 -0.8 -2.5 exopolyphosphatase compare
AO356_11450 -0.8 -1.7 cytochrome C compare
AO356_10030 -0.8 -4.7 Agmatine deiminase (EC 3.5.3.12) (from data) compare
AO356_06690 -0.8 -2.2 queuine tRNA-ribosyltransferase compare
AO356_12640 -0.8 -1.9 cytochrome C compare
AO356_22970 -0.8 -3.8 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
AO356_18325 -0.8 -5.5 argininosuccinate synthase compare
AO356_00520 -0.8 -1.4 cobalt transporter compare
AO356_00560 -0.8 -1.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_22675 -0.8 -1.4 sulfate transporter compare
AO356_27550 -0.8 -1.5 3-oxoacyl-ACP synthase compare
AO356_20650 -0.8 -2.1 integrase compare
AO356_21200 -0.8 -1.2 quercetin 2,3-dioxygenase compare
AO356_12380 -0.8 -3.7 ATP-dependent DNA helicase RecG compare
AO356_19515 -0.8 -1.2 hypothetical protein compare
AO356_06695 -0.8 -3.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_27230 -0.8 -3.5 hypothetical protein compare
AO356_26485 -0.8 -1.2 hypothetical protein compare
AO356_07920 -0.8 -3.0 exodeoxyribonuclease V subunit gamma compare
AO356_27240 -0.8 -3.1 hypothetical protein compare
AO356_16450 -0.8 -2.1 GTP-binding protein compare
AO356_19165 -0.7 -2.3 adenosylcobinamide kinase compare
AO356_05100 -0.7 -5.3 long-chain fatty acid--CoA ligase compare
AO356_02220 -0.7 -3.0 ATPase compare
AO356_22990 -0.7 -4.1 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) compare
AO356_28685 -0.7 -2.1 betaine-aldehyde dehydrogenase compare
AO356_20920 -0.7 -2.5 peptidase compare
AO356_18805 -0.7 -1.1 magnesium transporter compare
AO356_16085 -0.7 -2.7 MFS transporter compare
AO356_12610 -0.7 -1.5 Fe-S oxidoreductase compare
AO356_11990 -0.7 -5.0 DNA helicase II compare
AO356_16080 -0.7 -4.8 ATPase compare
AO356_12735 -0.7 -1.0 diaminopimelate epimerase compare
AO356_17950 -0.7 -4.0 histidine kinase compare
AO356_22210 -0.7 -1.4 hypothetical protein compare
AO356_14335 -0.7 -1.9 rRNA methyltransferase compare
AO356_05900 -0.7 -3.1 stationary phase survival protein SurE compare
AO356_29035 -0.7 -2.3 multidrug transporter CflA compare
AO356_08875 -0.7 -1.3 toluene tolerance protein compare
AO356_17890 -0.7 -0.8 H-NS histone compare
AO356_09835 -0.7 -2.8 iron transporter compare
AO356_22095 -0.7 -3.0 cupin compare
AO356_12525 -0.7 -3.9 acetylglutamate kinase compare
AO356_28595 -0.7 -1.5 transcriptional regulator compare
AO356_29540 -0.7 -1.3 transcriptional regulator compare
AO356_09425 -0.7 -3.6 malate dehydrogenase compare
AO356_21125 -0.7 -2.1 cyclic peptide transporter compare
AO356_13425 -0.7 -0.9 hypothetical protein compare
AO356_01585 -0.6 -3.9 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
AO356_28610 -0.6 -1.0 AraC family transcriptional regulator compare
AO356_19420 -0.6 -1.1 septum formation inhibitor compare
AO356_07670 -0.6 -2.8 hypothetical protein compare
AO356_18740 -0.6 -1.5 succinylglutamate-semialdehyde dehydrogenase compare
AO356_01755 -0.6 -1.5 trigger factor compare
AO356_24250 -0.6 -3.0 ABC transporter ATP-binding protein compare
AO356_02860 -0.6 -0.9 histidine kinase compare
AO356_04325 -0.6 -2.5 allophanate hydrolase compare
AO356_15970 -0.6 -1.4 50s ribosomal protein l13 compare
AO356_11675 -0.6 -3.5 chromosome partitioning protein compare
AO356_27215 -0.6 -1.7 hypothetical protein compare
AO356_29270 -0.6 -1.3 ABC transporter permease compare
AO356_20865 -0.6 -3.3 2-methylisocitrate lyase compare
AO356_08280 -0.6 -2.0 oxidoreductase compare
AO356_16070 -0.6 -2.5 poly(A) polymerase compare
AO356_17955 -0.6 -2.7 2-dehydropantoate 2-reductase compare
AO356_02955 -0.6 -1.0 hypothetical protein compare
AO356_16350 -0.6 -2.1 hypothetical protein compare
AO356_19045 -0.6 -4.3 chemotaxis protein CheY compare
AO356_18275 -0.6 -4.2 ornithine carbamoyltransferase compare
AO356_00705 -0.6 -2.4 histidine kinase compare
AO356_06065 -0.6 -1.6 ArsC family transcriptional regulator compare
AO356_22980 -0.6 -1.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO356_04060 -0.6 -1.9 hypothetical protein compare
AO356_18065 -0.6 -1.6 7-carboxy-7-deazaguanine synthase compare
AO356_08975 -0.6 -4.0 diguanylate cyclase compare
AO356_18755 -0.6 -3.2 succinylglutamate desuccinylase compare
AO356_27345 -0.6 -2.4 phenol degradation protein meta compare
AO356_19175 -0.6 -1.5 alpha-ribazole phosphatase compare
AO356_17575 -0.6 -1.3 hypothetical protein compare
AO356_15515 -0.6 -1.6 DNA polymerase III subunit epsilon compare
AO356_05760 -0.6 -1.4 phage tail protein compare
AO356_12620 -0.6 -3.7 amino acid dehydrogenase compare
AO356_11465 -0.6 -3.4 DNA polymerase I compare
AO356_23425 -0.6 -2.2 saccharopine dehydrogenase compare
AO356_27210 -0.6 -2.8 hypothetical protein compare
AO356_18775 -0.6 -1.1 aspartate kinase compare
AO356_09455 -0.6 -0.6 ATP-dependent protease subunit HslV compare
AO356_20215 -0.6 -2.7 radical SAM protein compare
AO356_24245 -0.6 -1.6 siderophore-iron reductase FhuF compare
AO356_08585 -0.6 -1.5 50S ribosomal protein L9 compare
AO356_06965 -0.6 -3.0 histidinol dehydrogenase compare
AO356_00530 -0.6 -1.8 precorrin-4 C11-methyltransferase compare
AO356_05830 -0.6 -1.0 phage tail protein compare
AO356_12750 -0.6 -1.6 DNA mismatch repair protein MutT compare
AO356_12605 -0.6 -3.4 FAD-dependent oxidoreductase compare
AO356_10695 -0.5 -3.5 diguanylate cyclase compare
AO356_01595 -0.5 -2.8 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
AO356_05995 -0.5 -1.4 hypothetical protein compare
AO356_23540 -0.5 -2.0 GntR family transcriptional regulator compare
AO356_26660 -0.5 -1.5 carbon monoxide dehydrogenase compare
AO356_19050 -0.5 -1.2 cysteine synthase compare
AO356_27205 -0.5 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in carbon source experiments

For carbon source casamino acids across organisms