Experiment set5IT075 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_aerobic_120MIN_ZN11B

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -5.6 -9.3 outer membrane protein TolC compare
CSW01_02890 -3.4 -12.5 aspartate kinase compare
CSW01_04650 -3.0 -2.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_11535 -2.7 -7.7 thiamine-phosphate kinase compare
CSW01_01300 -2.6 -5.1 sugar ABC transporter compare
CSW01_02875 -2.5 -7.1 DNA recombination/repair protein RecA compare
CSW01_05575 -2.0 -3.5 phosphate acetyltransferase compare
CSW01_01015 -1.8 -12.5 DNA helicase II compare
CSW01_03325 -1.8 -2.0 porin compare
CSW01_13305 -1.8 -2.7 shikimate kinase compare
CSW01_04845 -1.7 -5.4 D-alanyl-D-alanine carboxypeptidase compare
CSW01_01295 -1.7 -2.1 ABC transporter permease compare
CSW01_00560 -1.4 -3.4 DNA polymerase I compare
CSW01_13805 -1.3 -3.5 Hsp33 family molecular chaperone HslO compare
CSW01_09240 -1.3 -4.0 Holliday junction branch migration DNA helicase RuvB compare
CSW01_09620 -1.3 -3.3 trigger factor compare
CSW01_07155 -1.2 -3.0 spermidine/putrescine ABC transporter permease PotB compare
CSW01_09525 -1.2 -0.8 DNA translocase FtsK compare
CSW01_14680 -1.2 -1.9 aminotransferase compare
CSW01_01125 -1.2 -7.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_03410 -1.2 -2.0 polyribonucleotide nucleotidyltransferase compare
CSW01_00450 -1.1 -2.2 SCP2 domain-containing protein compare
CSW01_10190 -1.1 -4.9 nucleoid-associated protein compare
CSW01_04375 -1.1 -2.0 SsrA-binding protein compare
CSW01_11670 -1.1 -1.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_09245 -1.1 -3.7 Holliday junction branch migration protein RuvA compare
CSW01_12255 -1.1 -3.7 flavodoxin FldB compare
CSW01_12365 -1.1 -2.5 inorganic phosphate transporter compare
CSW01_08450 -1.1 -2.1 antimicrobial peptide ABC transporter permease SapB compare
CSW01_16195 -1.0 -1.6 DUF645 domain-containing protein compare
CSW01_11565 -1.0 -2.2 transcriptional regulator NrdR compare
CSW01_05580 -1.0 -4.4 acetate kinase compare
CSW01_02490 -0.9 -5.0 glutathione synthetase compare
CSW01_10260 -0.9 -2.4 thiol:disulfide interchange protein DsbE compare
CSW01_03975 -0.9 -4.3 exodeoxyribonuclease VII large subunit compare
CSW01_11115 -0.9 -3.2 hypothetical protein compare
CSW01_12250 -0.9 -4.2 site-specific tyrosine recombinase XerD compare
CSW01_00650 -0.9 -4.4 tyrosine recombinase XerC compare
CSW01_01265 -0.8 -2.3 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_07160 -0.8 -3.4 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_08240 -0.8 -2.0 ATP-binding protein compare
CSW01_15430 -0.8 -2.3 hypothetical protein compare
CSW01_01245 -0.8 -2.9 lipopolysaccharide heptosyltransferase II compare
CSW01_04850 -0.8 -4.0 septal ring lytic transglycosylase RlpA compare
CSW01_13670 -0.8 -2.0 DNA-directed RNA polymerase subunit omega compare
CSW01_17275 -0.8 -1.0 large conductance mechanosensitive channel protein MscL compare
CSW01_15425 -0.8 -1.2 DUF3265 domain-containing protein compare
CSW01_17090 -0.8 -4.6 SPOR domain-containing protein compare
CSW01_14420 -0.8 -4.1 peptidase M23 compare
CSW01_03870 -0.8 -1.1 inositol monophosphatase compare
CSW01_16785 -0.7 -3.2 hypothetical protein compare
CSW01_01800 -0.7 -1.5 tRNA-Met compare
CSW01_16395 -0.7 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_10710 -0.7 -4.3 deferrochelatase compare
CSW01_02970 -0.7 -4.0 glutamate--cysteine ligase compare
CSW01_09605 -0.7 -3.2 endopeptidase La compare
CSW01_06585 -0.7 -2.0 fumarate hydratase compare
CSW01_04935 -0.7 -1.0 phosphocarrier protein HPr compare
CSW01_05025 -0.7 -3.8 transcriptional regulator compare
CSW01_10255 -0.7 -1.1 cytochrome c-type biogenesis protein CcmH compare
CSW01_04870 -0.7 -1.3 ribosome silencing factor compare
CSW01_06825 -0.7 -1.5 acylphosphatase compare
CSW01_02450 -0.7 -3.9 pyrroline-5-carboxylate reductase compare
CSW01_17780 -0.7 -1.8 hypothetical protein compare
CSW01_05180 -0.7 -1.3 tRNA-Asn compare
CSW01_08620 -0.7 -4.6 chromosome partition protein MukB compare
CSW01_06015 -0.6 -3.5 NAD-dependent malic enzyme compare
CSW01_18420 -0.6 -2.4 hypothetical protein compare
CSW01_05630 -0.6 -4.5 replication-associated recombination protein A compare
CSW01_15870 -0.6 -1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_11690 -0.6 -4.2 hypothetical protein compare
CSW01_08125 -0.6 -2.0 glutaredoxin family protein compare
CSW01_16435 -0.6 -1.2 DUF3265 domain-containing protein compare
CSW01_19105 -0.6 -2.0 TetR/AcrR family transcriptional regulator compare
CSW01_04570 -0.6 -1.7 exodeoxyribonuclease 7 small subunit compare
CSW01_10355 -0.6 -2.2 phosphohistidine phosphatase SixA compare
CSW01_16255 -0.6 -2.5 hypothetical protein compare
CSW01_03985 -0.6 -2.0 GMP synthase (glutamine-hydrolyzing) compare
CSW01_11775 -0.6 -4.1 exodeoxyribonuclease V subunit alpha compare
CSW01_05265 -0.6 -0.8 methionine--tRNA ligase compare
CSW01_00850 -0.6 -4.9 multidrug resistance protein compare
CSW01_07450 -0.6 -3.1 Lon protease family protein compare
CSW01_14055 -0.6 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_15110 -0.6 -1.7 iron(III) ABC transporter substrate-binding protein compare
CSW01_04315 -0.6 -2.7 TCP pilus virulence regulatory protein compare
CSW01_10245 -0.6 -2.4 ABC transporter compare
CSW01_04910 -0.6 -1.9 PhoH family protein compare
CSW01_03075 -0.5 -1.8 phosphoheptose isomerase compare
CSW01_03795 -0.5 -0.8 phosphate ABC transporter ATP-binding protein compare
CSW01_13300 -0.5 -2.8 3-dehydroquinate synthase compare
CSW01_04320 -0.5 -3.9 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_13410 -0.5 -2.7 protein-export protein SecB compare
CSW01_10565 -0.5 -2.3 hypothetical protein compare
CSW01_10545 -0.5 -1.7 hypothetical protein compare
CSW01_13420 -0.5 -1.1 elongation factor P--(R)-beta-lysine ligase compare
CSW01_08465 -0.5 -1.0 ABC transporter ATP-binding protein compare
CSW01_05890 -0.5 -2.5 hypothetical protein compare
CSW01_07780 -0.5 -3.4 DUF3450 domain-containing protein compare
CSW01_10405 -0.5 -3.4 Mn2+/Zn2+ABC transporter ATP-binding protein compare
CSW01_15005 -0.5 -1.4 HNH endonuclease compare
CSW01_11915 -0.5 -2.1 hypothetical protein compare
CSW01_02755 -0.5 -0.7 glutamyl-tRNA amidotransferase compare
CSW01_10835 -0.5 -2.5 hypothetical protein compare
CSW01_05240 -0.5 -2.1 CBS domain-containing protein compare
CSW01_15310 -0.5 -1.0 exoribonuclease R compare
CSW01_11255 -0.5 -2.3 flagellar biosynthesis protein FlgP compare
CSW01_15755 -0.5 -1.4 hypothetical protein compare
CSW01_09465 -0.5 -2.7 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_04930 -0.5 -2.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_02315 -0.5 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_06435 -0.5 -1.6 C4-dicarboxylate ABC transporter compare
CSW01_08935 -0.5 -1.0 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_05280 -0.5 -2.3 uridine kinase compare
CSW01_07775 -0.5 -2.7 flagellar motor protein MotA compare
CSW01_00085 -0.5 -1.3 heat-shock protein Hsp20 compare
CSW01_08435 -0.5 -1.9 phage shock protein PspA compare
CSW01_05230 -0.5 -2.4 molybdopterin synthase catalytic subunit compare
CSW01_12680 -0.5 -3.0 cytosol aminopeptidase compare
CSW01_17495 -0.5 -2.6 glycerol-3-phosphate dehydrogenase compare
CSW01_11240 -0.5 -2.6 flagella basal body P-ring formation protein FlgA compare
CSW01_12465 -0.5 -2.0 elongation factor 4 compare
CSW01_09045 -0.5 -1.8 hypothetical protein compare
CSW01_04105 -0.5 -2.5 sodium pump decarboxylase compare
CSW01_15120 -0.5 -1.2 iron(III) ABC transporter permease compare
CSW01_00855 -0.5 -3.6 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_02720 -0.5 -3.4 AraC family transcriptional regulator compare
CSW01_15115 -0.5 -2.4 iron(III) ABC transporter permease compare
CSW01_19555 -0.5 -2.0 response regulator compare
CSW01_11710 -0.5 -2.7 transcriptional regulator compare
CSW01_00465 -0.4 -1.6 twin-arginine translocase subunit TatB compare
CSW01_07150 -0.4 -1.2 spermidine/putrescine ABC transporter permease PotC compare
CSW01_00500 -0.4 -3.7 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_08515 -0.4 -1.1 trimethylamine N-oxide reductase system protein TorE compare
CSW01_07755 -0.4 -2.1 hypothetical protein compare
CSW01_08800 -0.4 -3.0 paraquat-inducible protein B compare
CSW01_05020 -0.4 -1.6 regulatory protein ToxS compare
CSW01_17745 -0.4 -1.2 diacylglycerol kinase compare
CSW01_11105 -0.4 -2.0 hypothetical protein compare
CSW01_05370 -0.4 -0.6 YbaB/EbfC family nucleoid-associated protein compare
CSW01_12535 -0.4 -2.4 cell division protein ZapA compare
CSW01_07770 -0.4 -1.8 MotA/TolQ/ExbB proton channel family protein compare
CSW01_10560 -0.4 -1.5 chorismate synthase compare
CSW01_11415 -0.4 -1.8 phenolic acid decarboxylase compare
CSW01_10510 -0.4 -2.3 DUF4442 domain-containing protein compare
CSW01_08630 -0.4 -2.2 condensin subunit F compare
CSW01_09625 -0.4 -1.4 hypothetical protein compare
CSW01_17855 -0.4 -3.2 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_14125 -0.4 -1.9 1,4-alpha-glucan branching enzyme compare
CSW01_01225 -0.4 -2.3 capsular biosynthesis protein compare
CSW01_13340 -0.4 -3.1 DNA-binding transcriptional regulator OxyR compare
CSW01_11730 -0.4 -1.0 2-dehydropantoate 2-reductase compare
CSW01_11725 -0.4 -2.5 hypothetical protein compare
CSW01_02780 -0.4 -2.4 hypothetical protein compare
CSW01_03330 -0.4 -1.4 transcription elongation factor GreA compare
CSW01_02580 -0.4 -2.5 DeoR/GlpR transcriptional regulator compare
CSW01_15125 -0.4 -1.6 iron(III) ABC transporter ATP-binding protein compare
CSW01_00415 -0.4 -0.8 hypothetical protein compare
CSW01_11440 -0.4 -2.6 ribonuclease HII compare
CSW01_08990 -0.4 -1.7 glyoxalase compare
CSW01_17055 -0.4 -2.0 DNA-binding response regulator compare
CSW01_09955 -0.4 -1.9 L-asparaginase 1 compare
CSW01_16730 -0.4 -1.1 glutathione S-transferase compare
CSW01_11345 -0.4 -2.7 uracil phosphoribosyltransferase compare
CSW01_02265 -0.4 -2.0 arginine repressor compare
CSW01_12760 -0.4 -1.4 phospholipid-binding protein MlaC compare
CSW01_07210 -0.4 -1.1 hypothetical protein compare
CSW01_04195 -0.4 -2.1 class I SAM-dependent methyltransferase compare
CSW01_09970 -0.4 -1.9 peptide-methionine (R)-S-oxide reductase compare
CSW01_07165 -0.4 -1.6 hypothetical protein compare
CSW01_17370 -0.4 -1.3 hypothetical protein compare
CSW01_06420 -0.4 -2.0 DUF2982 domain-containing protein compare
CSW01_12130 -0.4 -1.0 DUF721 domain-containing protein compare
CSW01_06935 -0.4 -0.9 exonuclease compare
CSW01_04290 -0.4 -2.6 toxin coregulated pilus biosynthesis protein D compare
CSW01_19435 -0.4 -0.7 hypothetical protein compare
CSW01_05375 -0.4 -1.8 recombination protein RecR compare
CSW01_02985 -0.4 -1.9 inner membrane protein YpjD compare
CSW01_14810 -0.4 -1.4 tryptophanase leader peptide compare
CSW01_02880 -0.4 -1.8 regulatory protein RecX compare
CSW01_10290 -0.4 -1.7 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_18280 -0.4 -1.6 L-2,4-diaminobutyric acid acetyltransferase compare
CSW01_10875 -0.4 -1.3 redox-regulated ATPase YchF compare
CSW01_10550 -0.4 -2.3 elongation factor P hydroxylase compare
CSW01_10400 -0.4 -1.4 zinc ABC transporter substrate-binding protein compare
CSW01_08255 -0.4 -1.3 ribosome recycling factor compare
CSW01_13620 -0.4 -3.1 aspartate ammonia-lyase compare
CSW01_11080 -0.4 -1.9 transcriptional regulator compare
CSW01_02820 -0.4 -2.0 5'-nucleotidase SurE compare
CSW01_05880 -0.4 -1.6 alpha-L-glutamate ligase-like protein compare
CSW01_16070 -0.4 -2.1 isomerase compare
CSW01_08660 -0.4 -1.9 PurR family transcriptional regulator compare
CSW01_16030 -0.4 -1.3 DUF3709 domain-containing protein compare
CSW01_16660 -0.4 -2.0 hypothetical protein compare
CSW01_12750 -0.4 -0.7 BolA family transcriptional regulator compare
CSW01_10750 -0.4 -1.1 outer membrane protein assembly factor BamC compare
CSW01_16285 -0.4 -1.0 acetyltransferase compare
CSW01_14470 -0.4 -1.9 DUF134 domain-containing protein compare
CSW01_11755 -0.4 -2.4 murein transglycosylase compare
CSW01_15900 -0.4 -1.9 hypothetical protein compare
CSW01_14925 -0.4 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_aerobic experiments

For lb_0.5%bileacids_aerobic LB_0.5%bileacids across organisms