Experiment set5IT075 for Burkholderia phytofirmans PsJN

Compare to:

With vitamins, timepoint 1

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17395 -5.8 -2.6 anthranilate synthase subunit II compare
BPHYT_RS14915 -5.7 -3.9 phosphoserine aminotransferase compare
BPHYT_RS03480 -5.5 -6.5 ferritin compare
BPHYT_RS17680 -5.5 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17390 -5.2 -12.1 anthranilate synthase subunit I compare
BPHYT_RS17400 -5.2 -7.1 anthranilate phosphoribosyltransferase compare
BPHYT_RS09500 -5.2 -5.0 glucose-6-phosphate isomerase compare
BPHYT_RS14845 -5.1 -3.5 cysteine synthase compare
BPHYT_RS16835 -5.1 -6.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS04725 -5.1 -6.0 sulfite reductase compare
BPHYT_RS16270 -5.1 -4.9 phosphoglycerate kinase compare
BPHYT_RS03150 -5.0 -9.0 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS02590 -5.0 -8.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17685 -5.0 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17690 -5.0 -10.5 imidazole glycerol phosphate synthase compare
BPHYT_RS17670 -4.9 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS15920 -4.9 -6.7 argininosuccinate synthase compare
BPHYT_RS01590 -4.8 -6.9 methionine biosynthesis protein MetW compare
BPHYT_RS14855 -4.8 -3.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS04740 -4.7 -3.2 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS33875 -4.6 -7.6 tryptophan synthase subunit alpha compare
BPHYT_RS33880 -4.6 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS04955 -4.6 -2.8 methionyl-tRNA synthetase compare
BPHYT_RS33835 -4.6 -6.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS05225 -4.6 -9.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS33865 -4.5 -6.2 tryptophan synthase alpha chain compare
BPHYT_RS06555 -4.5 -6.8 ketol-acid reductoisomerase compare
BPHYT_RS14910 -4.5 -10.3 chorismate mutase compare
BPHYT_RS33900 -4.5 -10.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS05010 -4.5 -3.1 RpiR family transcriptional regulator compare
BPHYT_RS01595 -4.4 -9.3 homoserine O-acetyltransferase compare
BPHYT_RS17675 -4.4 -2.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17855 -4.4 -10.5 glutamate synthase compare
BPHYT_RS12530 -4.4 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS02610 -4.4 -4.2 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33645 -4.3 -5.8 homoserine kinase compare
BPHYT_RS14895 -4.2 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33915 -4.2 -7.0 isopropylmalate isomerase compare
BPHYT_RS33840 -4.1 -9.0 amidophosphoribosyltransferase compare
BPHYT_RS15915 -4.1 -6.2 ornithine carbamoyltransferase compare
BPHYT_RS17715 -4.0 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS06175 -4.0 -5.4 LPS biosynthesis compare
BPHYT_RS08960 -4.0 -2.7 threonine synthase compare
BPHYT_RS09515 -4.0 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06545 -4.0 -10.0 acetolactate synthase compare
BPHYT_RS18320 -3.9 -10.0 orotate phosphoribosyltransferase compare
BPHYT_RS04965 -3.9 -6.9 ATP-binding protein compare
BPHYT_RS03725 -3.8 -2.6 serine hydroxymethyltransferase compare
BPHYT_RS14190 -3.8 -5.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS13705 -3.8 -3.6 chorismate synthase compare
BPHYT_RS17890 -3.8 -2.5 shikimate kinase compare
BPHYT_RS03535 -3.8 -5.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS17885 -3.7 -6.5 3-dehydroquinate synthase compare
BPHYT_RS08955 -3.7 -2.5 homoserine dehydrogenase compare
BPHYT_RS05960 -3.7 -6.4 endoribonuclease L-PSP compare
BPHYT_RS16245 -3.6 -5.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06685 -3.6 -3.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS04720 -3.5 -6.1 transcriptional regulator compare
BPHYT_RS03640 -3.2 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06405 -3.2 -6.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS12845 -3.2 -14.7 ATPase compare
BPHYT_RS12465 -3.2 -5.1 inositol monophosphatase compare
BPHYT_RS07325 -3.2 -1.3 GntR family transcriptional regulator compare
BPHYT_RS06900 -3.1 -4.2 aspartate aminotransferase compare
BPHYT_RS33920 -3.1 -8.7 type II citrate synthase compare
BPHYT_RS06045 -3.1 -9.6 transaldolase compare
BPHYT_RS16735 -3.1 -6.7 phosphogluconate dehydratase compare
BPHYT_RS04730 -3.1 -3.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04745 -3.0 -4.5 sulfate adenylyltransferase compare
BPHYT_RS16905 -2.9 -4.7 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS05020 -2.9 -7.4 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS05035 -2.9 -4.9 sugar ABC transporter permease compare
BPHYT_RS08850 -2.9 -1.9 transcriptional regulator compare
BPHYT_RS17405 -2.9 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS12985 -2.8 -1.8 amino acid acetyltransferase compare
BPHYT_RS12840 -2.7 -3.6 pyruvate dehydrogenase compare
BPHYT_RS14195 -2.7 -3.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS17700 -2.7 -3.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS21470 -2.7 -3.2 6-hydroxynicotinate reductase compare
BPHYT_RS16255 -2.7 -1.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS03730 -2.7 -4.5 transcriptional repressor NrdR compare
BPHYT_RS06610 -2.6 -1.4 triosephosphate isomerase compare
BPHYT_RS18340 -2.6 -1.7 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS16840 -2.5 -1.7 transketolase compare
BPHYT_RS16675 -2.5 -1.6 dihydroorotase compare
BPHYT_RS14900 -2.4 -2.9 prephenate dehydrogenase compare
BPHYT_RS10100 -2.4 -3.7 dihydroxy-acid dehydratase compare
BPHYT_RS05025 -2.4 -3.6 sugar ABC transporter substrate-binding protein compare
BPHYT_RS03625 -2.4 -8.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS17520 -2.2 -6.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS14865 -2.2 -4.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS02905 -2.2 -15.6 RNA polymerase subunit sigma-54 compare
BPHYT_RS03645 -2.2 -3.3 tRNA dimethylallyltransferase compare
BPHYT_RS13220 -2.2 -6.6 phosphomethylpyrimidine synthase compare
BPHYT_RS09315 -2.1 -0.8 chemotaxis protein CheY compare
BPHYT_RS09280 -2.0 -1.6 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS06375 -2.0 -4.5 ribonuclease compare
BPHYT_RS04335 -2.0 -2.1 membrane protein compare
BPHYT_RS09145 -1.9 -7.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS18705 -1.9 -2.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS09355 -1.9 -2.3 LysR family transcriptional regulator compare
BPHYT_RS03495 -1.9 -5.5 hypothetical protein compare
BPHYT_RS11915 -1.8 -2.7 hypothetical protein compare
BPHYT_RS12150 -1.8 -10.5 PII uridylyl-transferase compare
BPHYT_RS04750 -1.8 -3.4 uroporphyrin-III C-methyltransferase compare
BPHYT_RS35955 -1.8 -1.3 hypothetical protein compare
BPHYT_RS08565 -1.8 -0.9 dihydroorotate dehydrogenase compare
BPHYT_RS16500 -1.7 -5.6 MIP family channel protein compare
BPHYT_RS15075 -1.7 -1.8 dihydrokaempferol 4-reductase compare
BPHYT_RS15890 -1.7 -1.4 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS20790 -1.6 -1.7 TetR family transcriptional regulator compare
BPHYT_RS25780 -1.6 -1.2 DeoR faimly transcriptional regulator compare
BPHYT_RS25980 -1.6 -1.2 urea carboxylase compare
BPHYT_RS06470 -1.6 -1.4 membrane protein compare
BPHYT_RS08950 -1.6 -5.4 aminotransferase compare
BPHYT_RS10345 -1.6 -1.2 flagellar motor protein MotB compare
BPHYT_RS10145 -1.6 -3.8 Mn-containing catalase compare
BPHYT_RS05040 -1.6 -4.1 sugar ABC transporter ATPase compare
BPHYT_RS31635 -1.6 -2.4 choline dehydrogenase compare
BPHYT_RS24925 -1.6 -1.3 cytochrome O ubiquinol oxidase compare
BPHYT_RS02865 -1.5 -3.1 hypothetical protein compare
BPHYT_RS13320 -1.5 -1.7 allantoate amidohydrolase compare
BPHYT_RS10040 -1.5 -0.8 hypothetical protein compare
BPHYT_RS20060 -1.5 -1.7 hypothetical protein compare
BPHYT_RS01240 -1.5 -2.1 hypothetical protein compare
BPHYT_RS15570 -1.5 -6.3 NAD-dependent dehydratase compare
BPHYT_RS23230 -1.5 -1.2 histidine kinase compare
BPHYT_RS02570 -1.5 -2.5 phosphocarrier protein HPr compare
BPHYT_RS10095 -1.5 -1.1 integrase compare
BPHYT_RS34745 -1.4 -1.0 hypothetical protein compare
BPHYT_RS18590 -1.4 -0.9 hypothetical protein compare
BPHYT_RS09155 -1.4 -4.7 3-ketoacyl-ACP reductase compare
BPHYT_RS36355 -1.4 -1.9 hypothetical protein compare
BPHYT_RS03090 -1.4 -1.6 hypothetical protein compare
BPHYT_RS14185 -1.4 -2.1 transcription elongation factor GreA compare
BPHYT_RS10645 -1.4 -1.4 cyanate hydratase compare
BPHYT_RS08000 -1.4 -2.0 antibiotic biosynthesis monooxygenase compare
BPHYT_RS26240 -1.4 -2.9 hypothetical protein compare
BPHYT_RS16490 -1.4 -4.7 glycerol-3-phosphate dehydrogenase compare
BPHYT_RS05900 -1.4 -2.8 hypothetical protein compare
BPHYT_RS07320 -1.4 -1.6 dihydrodipicolinate synthetase compare
BPHYT_RS08945 -1.4 -5.1 hypothetical protein compare
BPHYT_RS30775 -1.4 -2.1 gluconate 2-dehydrogenase compare
BPHYT_RS25140 -1.3 -2.2 hypothetical protein compare
BPHYT_RS07705 -1.3 -2.0 arginine succinyltransferase compare
BPHYT_RS20750 -1.3 -2.0 LacI family transcriptional regulator compare
BPHYT_RS25065 -1.3 -1.3 glycine/betaine ABC transporter ATPase compare
BPHYT_RS30140 -1.3 -1.9 3-methylitaconate isomerase compare
BPHYT_RS25770 -1.3 -1.4 hypothetical protein compare
BPHYT_RS23650 -1.3 -1.2 hypothetical protein compare
BPHYT_RS35885 -1.3 -3.2 hypothetical protein compare
BPHYT_RS26025 -1.3 -0.9 hypothetical protein compare
BPHYT_RS03570 -1.3 -5.6 heat-inducible transcription repressor HrcA compare
BPHYT_RS22045 -1.3 -2.4 peptide ABC transporter permease compare
BPHYT_RS07130 -1.3 -1.2 biopolymer transporter ExbD compare
BPHYT_RS04400 -1.3 -1.5 Crp/Fnr family transcriptional regulator compare
BPHYT_RS30995 -1.3 -0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS29085 -1.3 -1.9 LysR family transcriptional regulator compare
BPHYT_RS32260 -1.3 -0.9 hypothetical protein compare
BPHYT_RS19130 -1.3 -2.6 acetyltransferase compare
BPHYT_RS02595 -1.3 -1.6 sulfurtransferase compare
BPHYT_RS23030 -1.3 -1.3 gluconate 2-dehydrogenase compare
BPHYT_RS30210 -1.3 -2.1 GCN5 family acetyltransferase compare
BPHYT_RS12935 -1.2 -5.1 chemotaxis protein CheY compare
BPHYT_RS00885 -1.2 -1.9 chemotaxis protein CheY compare
BPHYT_RS10925 -1.2 -1.7 aldehyde dehydrogenase compare
BPHYT_RS05730 -1.2 -3.7 hypothetical protein compare
BPHYT_RS13200 -1.2 -1.4 molybdopterin binding oxidoreductase compare
BPHYT_RS05030 -1.2 -2.7 sugar ABC transporter permease compare
BPHYT_RS17380 -1.2 -4.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS27905 -1.2 -3.7 MFS transporter compare
BPHYT_RS14550 -1.2 -1.0 tRNA-Asn compare
BPHYT_RS17100 -1.2 -5.2 RNA pyrophosphohydrolase compare
BPHYT_RS33905 -1.2 -0.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS17525 -1.2 -1.5 glutaredoxin compare
BPHYT_RS05910 -1.2 -2.9 hypothetical protein compare
BPHYT_RS16495 -1.2 -5.7 glycerol kinase compare
BPHYT_RS34530 -1.2 -2.1 LysR family transcriptional regulator compare
BPHYT_RS26575 -1.2 -2.1 hypothetical protein compare
BPHYT_RS23275 -1.2 -2.5 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS02365 -1.2 -1.4 hypothetical protein compare
BPHYT_RS31625 -1.2 -3.5 membrane protein compare
BPHYT_RS26285 -1.2 -1.9 glycogen debranching protein compare
BPHYT_RS16975 -1.2 -3.8 shikimate 5-dehydrogenase compare
BPHYT_RS01485 -1.2 -1.0 histidine kinase compare
BPHYT_RS31510 -1.2 -2.9 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS06190 -1.2 -2.1 heptosyltransferase compare
BPHYT_RS33870 -1.2 -3.1 DNA methylase N-4 compare
BPHYT_RS11895 -1.2 -1.9 peroxiredoxin compare
BPHYT_RS09160 -1.2 -3.2 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS26570 -1.2 -0.9 5'-nucleotidase compare
BPHYT_RS20840 -1.2 -2.1 beta-lactamase compare
BPHYT_RS26390 -1.2 -0.9 antibiotic resistance protein compare
BPHYT_RS27065 -1.2 -1.3 hypothetical protein compare
BPHYT_RS03965 -1.2 -2.4 GDP-mannose mannosyl hydrolase compare
BPHYT_RS20280 -1.1 -1.7 hypothetical protein compare
BPHYT_RS29520 -1.1 -0.9 hypothetical protein compare
BPHYT_RS16880 -1.1 -1.6 malic enzyme compare
BPHYT_RS33965 -1.1 -1.7 methylcitrate synthase compare
BPHYT_RS15620 -1.1 -2.4 peptidyl-prolyl cis-trans isomerase compare


Specific Phenotypes

For 1 genes in this experiment