Experiment set5IT074 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_aerobic_120MIN_ZN11A

200 most important genes:

  gene name fitness t score description  
CSW01_11535 -3.2 -8.1 thiamine-phosphate kinase compare
CSW01_05265 -2.0 -2.8 methionine--tRNA ligase compare
CSW01_18350 -1.9 -1.2 cell division protein DedD compare
CSW01_02875 -1.6 -6.4 DNA recombination/repair protein RecA compare
CSW01_05575 -1.5 -3.8 phosphate acetyltransferase compare
CSW01_03985 -1.5 -3.7 GMP synthase (glutamine-hydrolyzing) compare
CSW01_13805 -1.5 -3.9 Hsp33 family molecular chaperone HslO compare
CSW01_02755 -1.4 -2.0 glutamyl-tRNA amidotransferase compare
CSW01_03410 -1.4 -2.5 polyribonucleotide nucleotidyltransferase compare
CSW01_00560 -1.4 -3.4 DNA polymerase I compare
CSW01_03870 -1.3 -1.4 inositol monophosphatase compare
CSW01_10190 -1.3 -4.5 nucleoid-associated protein compare
CSW01_14680 -1.2 -1.8 aminotransferase compare
CSW01_01300 -1.2 -4.1 sugar ABC transporter compare
CSW01_13420 -1.2 -2.6 elongation factor P--(R)-beta-lysine ligase compare
CSW01_14910 -1.2 -2.3 cold-shock protein compare
CSW01_18525 -1.1 -2.1 integrase compare
CSW01_09525 -1.0 -0.6 DNA translocase FtsK compare
CSW01_16785 -1.0 -3.3 hypothetical protein compare
CSW01_01800 -1.0 -1.7 tRNA-Met compare
CSW01_03475 -0.9 -3.5 ATP-dependent RNA helicase SrmB compare
CSW01_09245 -0.9 -3.4 Holliday junction branch migration protein RuvA compare
CSW01_07435 -0.9 -2.1 hypothetical protein compare
CSW01_14495 -0.9 -2.8 NUDIX hydrolase compare
CSW01_09240 -0.9 -2.8 Holliday junction branch migration DNA helicase RuvB compare
CSW01_13305 -0.9 -1.7 shikimate kinase compare
CSW01_13450 -0.8 -1.8 EF-P beta-lysylation protein EpmB compare
CSW01_00465 -0.8 -2.8 twin-arginine translocase subunit TatB compare
CSW01_15810 -0.8 -1.7 hypothetical protein compare
CSW01_01965 -0.8 -0.8 glucose-6-phosphate isomerase compare
CSW01_14085 -0.8 -1.6 transcriptional regulator compare
CSW01_04910 -0.8 -2.5 PhoH family protein compare
CSW01_11730 -0.8 -1.8 2-dehydropantoate 2-reductase compare
CSW01_18635 -0.8 -3.0 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_12255 -0.8 -2.5 flavodoxin FldB compare
CSW01_03075 -0.8 -2.1 phosphoheptose isomerase compare
CSW01_06610 -0.8 -3.3 30S ribosomal protein S5 alanine N-acetyltransferase compare
CSW01_08450 -0.7 -1.4 antimicrobial peptide ABC transporter permease SapB compare
CSW01_03155 -0.7 -4.8 RNA polymerase-binding transcription factor DksA compare
CSW01_10710 -0.7 -4.8 deferrochelatase compare
CSW01_13300 -0.7 -3.5 3-dehydroquinate synthase compare
CSW01_03950 -0.7 -2.1 hypothetical protein compare
CSW01_17855 -0.7 -4.9 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_17275 -0.7 -0.8 large conductance mechanosensitive channel protein MscL compare
CSW01_14125 -0.7 -2.7 1,4-alpha-glucan branching enzyme compare
CSW01_02970 -0.7 -3.7 glutamate--cysteine ligase compare
CSW01_10390 -0.7 -1.6 ferrous iron transport protein A compare
CSW01_16325 -0.7 -1.2 hypothetical protein compare
CSW01_02450 -0.7 -4.3 pyrroline-5-carboxylate reductase compare
CSW01_16030 -0.7 -2.5 DUF3709 domain-containing protein compare
CSW01_16195 -0.7 -1.0 DUF645 domain-containing protein compare
CSW01_05580 -0.6 -2.3 acetate kinase compare
CSW01_15310 -0.6 -2.1 exoribonuclease R compare
CSW01_12365 -0.6 -1.8 inorganic phosphate transporter compare
CSW01_07230 -0.6 -2.9 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_12005 -0.6 -1.0 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_11565 -0.6 -1.0 transcriptional regulator NrdR compare
CSW01_14625 -0.6 -1.0 hypothetical protein compare
CSW01_03785 -0.6 -1.6 phosphate ABC transporter permease compare
CSW01_01295 -0.6 -1.0 ABC transporter permease compare
CSW01_04315 -0.6 -2.9 TCP pilus virulence regulatory protein compare
CSW01_19435 -0.6 -0.9 hypothetical protein compare
CSW01_15535 -0.6 -1.8 NUDIX hydrolase compare
CSW01_10195 -0.6 -1.5 hypothetical protein compare
CSW01_07200 -0.6 -0.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_13620 -0.6 -4.5 aspartate ammonia-lyase compare
CSW01_09720 -0.6 -0.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_13395 -0.5 -3.0 PadR family transcriptional regulator compare
CSW01_15120 -0.5 -1.7 iron(III) ABC transporter permease compare
CSW01_09620 -0.5 -1.1 trigger factor compare
CSW01_06565 -0.5 -3.5 L-serine ammonia-lyase compare
CSW01_01015 -0.5 -3.9 DNA helicase II compare
CSW01_11780 -0.5 -0.7 exodeoxyribonuclease V subunit beta compare
CSW01_08705 -0.5 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_10245 -0.5 -1.8 ABC transporter compare
CSW01_00080 -0.5 -1.6 hypothetical protein compare
CSW01_17370 -0.5 -1.5 hypothetical protein compare
CSW01_19545 -0.5 -2.8 chemotaxis protein CheW compare
CSW01_11115 -0.5 -1.7 hypothetical protein compare
CSW01_14100 -0.5 -1.9 hypothetical protein compare
CSW01_04260 -0.5 -2.4 pilus assembly protein compare
CSW01_01020 -0.5 -1.9 hypothetical protein compare
CSW01_17075 -0.5 -1.7 stress response translation initiation inhibitor YciH compare
CSW01_12250 -0.5 -2.6 site-specific tyrosine recombinase XerD compare
CSW01_15115 -0.5 -2.6 iron(III) ABC transporter permease compare
CSW01_13340 -0.5 -3.8 DNA-binding transcriptional regulator OxyR compare
CSW01_09465 -0.5 -2.7 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_11525 -0.5 -1.9 hypothetical protein compare
CSW01_07195 -0.5 -1.3 cytochrome biogenesis protein compare
CSW01_08515 -0.5 -1.4 trimethylamine N-oxide reductase system protein TorE compare
CSW01_15680 -0.5 -1.0 DUF3265 domain-containing protein compare
CSW01_19415 -0.5 -1.4 hypothetical protein compare
CSW01_17510 -0.5 -0.9 peptidylprolyl isomerase compare
CSW01_11325 -0.5 -1.7 DUF3149 domain-containing protein compare
CSW01_16310 -0.5 -0.6 DUF3709 domain-containing protein compare
CSW01_14470 -0.5 -2.2 DUF134 domain-containing protein compare
CSW01_17555 -0.5 -2.0 LacI family transcriptional regulator compare
CSW01_10545 -0.5 -1.8 hypothetical protein compare
CSW01_19095 -0.5 -2.2 DUF445 domain-containing protein compare
CSW01_15740 -0.5 -2.3 hypothetical protein compare
CSW01_07490 -0.5 -2.5 dihydroorotate dehydrogenase (quinone) compare
CSW01_08435 -0.5 -2.2 phage shock protein PspA compare
CSW01_04585 -0.5 -2.2 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_07450 -0.5 -1.9 Lon protease family protein compare
CSW01_10445 -0.5 -1.3 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_18575 -0.5 -2.1 amidohydrolase compare
CSW01_05195 -0.5 -1.9 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_05480 -0.5 -1.4 hypothetical protein compare
CSW01_08590 -0.5 -1.8 hypothetical protein compare
CSW01_18310 -0.4 -1.0 hypothetical protein compare
CSW01_03065 -0.4 -1.3 ClpXP protease specificity-enhancing factor compare
CSW01_15030 -0.4 -0.9 hypothetical protein compare
CSW01_14935 -0.4 -0.9 hypothetical protein compare
CSW01_02315 -0.4 -2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_16420 -0.4 -2.0 DUF3465 domain-containing protein compare
CSW01_04870 -0.4 -1.3 ribosome silencing factor compare
CSW01_17745 -0.4 -1.0 diacylglycerol kinase compare
CSW01_12680 -0.4 -2.6 cytosol aminopeptidase compare
CSW01_13285 -0.4 -1.1 ribulose-phosphate 3-epimerase compare
CSW01_04570 -0.4 -1.8 exodeoxyribonuclease 7 small subunit compare
CSW01_16660 -0.4 -1.8 hypothetical protein compare
CSW01_04375 -0.4 -1.5 SsrA-binding protein compare
CSW01_13565 -0.4 -1.7 cell division protein ZapB compare
CSW01_05280 -0.4 -2.4 uridine kinase compare
CSW01_00660 -0.4 -3.5 sensor domain-containing phosphodiesterase compare
CSW01_15110 -0.4 -1.4 iron(III) ABC transporter substrate-binding protein compare
CSW01_10570 -0.4 -2.7 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
CSW01_04195 -0.4 -2.8 class I SAM-dependent methyltransferase compare
CSW01_02490 -0.4 -2.4 glutathione synthetase compare
CSW01_04285 -0.4 -1.1 toxin coregulated pilus biosynthesis protein R compare
CSW01_16460 -0.4 -0.9 acetyltransferase compare
CSW01_18760 -0.4 -2.7 dihydroorotase compare
CSW01_03980 -0.4 -2.3 IMP dehydrogenase compare
CSW01_10875 -0.4 -1.4 redox-regulated ATPase YchF compare
CSW01_00900 -0.4 -0.9 hypothetical protein compare
CSW01_15870 -0.4 -0.9 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_11290 -0.4 -2.5 hypothetical protein compare
CSW01_19140 -0.4 -2.1 organic hydroperoxide resistance protein compare
CSW01_16900 -0.4 -0.8 twin-arginine translocase TatA/TatE family subunit compare
CSW01_01110 -0.4 -3.0 YicC family protein compare
CSW01_07720 -0.4 -0.7 DUF3802 domain-containing protein compare
CSW01_10565 -0.4 -1.7 hypothetical protein compare
CSW01_02940 -0.4 -1.9 oxaloacetate decarboxylase subunit gamma compare
CSW01_09970 -0.4 -1.9 peptide-methionine (R)-S-oxide reductase compare
CSW01_04105 -0.4 -2.4 sodium pump decarboxylase compare
CSW01_18705 -0.4 -1.4 biopolymer transporter exbD1 compare
CSW01_01385 -0.4 -2.4 DUF416 domain-containing protein compare
CSW01_00065 -0.4 -2.3 DNA replication and repair protein RecF compare
CSW01_08920 -0.4 -2.0 C4-dicarboxylate ABC transporter permease compare
CSW01_01330 -0.4 -1.4 oxidoreductase compare
CSW01_09695 -0.4 -1.7 LysE family translocator compare
CSW01_10330 -0.4 -1.5 chemotaxis protein CheY compare
CSW01_11880 -0.4 -0.8 hypothetical protein compare
CSW01_06935 -0.4 -1.2 exonuclease compare
CSW01_12465 -0.4 -1.2 elongation factor 4 compare
CSW01_12130 -0.4 -1.4 DUF721 domain-containing protein compare
CSW01_02890 -0.4 -2.2 aspartate kinase compare
CSW01_15405 -0.4 -1.3 integron integrase compare
CSW01_06455 -0.4 -1.6 DNA-binding response regulator compare
CSW01_09625 -0.4 -0.8 hypothetical protein compare
CSW01_18150 -0.3 -0.4 transcription initiation factor TFIIIB compare
CSW01_01120 -0.3 -3.0 orotate phosphoribosyltransferase compare
CSW01_12100 -0.3 -3.0 carbamoyl-phosphate synthase large chain compare
CSW01_11990 -0.3 -1.8 ribonuclease activity regulator protein RraA compare
CSW01_07890 -0.3 -1.3 hypothetical protein compare
CSW01_17495 -0.3 -1.8 glycerol-3-phosphate dehydrogenase compare
CSW01_14135 -0.3 -1.8 type VI secretion system tube protein Hcp compare
CSW01_11145 -0.3 -1.5 hypothetical protein compare
CSW01_04170 -0.3 -2.1 hypothetical protein compare
CSW01_16505 -0.3 -1.1 DUF645 domain-containing protein compare
CSW01_07500 -0.3 -0.5 DUF2835 domain-containing protein compare
CSW01_11280 -0.3 -2.8 TonB-dependent siderophore receptor compare
CSW01_01255 -0.3 -2.5 acyltransferase compare
CSW01_06030 -0.3 -1.2 helicase compare
CSW01_19205 -0.3 -2.6 flavohemoglobin expression-modulating QEGLA motif protein compare
CSW01_19525 -0.3 -1.4 chemoreceptor glutamine deamidase CheD compare
CSW01_14465 -0.3 -1.9 EamA/RhaT family transporter compare
CSW01_11125 -0.3 -1.6 hypothetical protein compare
CSW01_15000 -0.3 -0.9 rfbP protein compare
CSW01_18630 -0.3 -1.4 6-phosphogluconolactonase compare
CSW01_17525 -0.3 -0.6 hypothetical protein compare
CSW01_12360 -0.3 -0.9 TIGR00153 family protein compare
CSW01_07605 -0.3 -1.3 molecular chaperone compare
CSW01_07565 -0.3 -2.0 3-deoxy-7-phosphoheptulonate synthase compare
CSW01_04515 -0.3 -0.9 50S ribosomal protein L36 compare
CSW01_15180 -0.3 -0.7 3-keto-L-gulonate-6-phosphate decarboxylase compare
CSW01_02690 -0.3 -1.3 DUF2787 domain-containing protein compare
CSW01_18545 -0.3 -1.8 non-hemolytic enterotoxin lytic component L1 compare
CSW01_15125 -0.3 -1.3 iron(III) ABC transporter ATP-binding protein compare
CSW01_09315 -0.3 -1.1 exodeoxyribonuclease III compare
CSW01_14965 -0.3 -1.3 hypothetical protein compare
CSW01_02670 -0.3 -1.8 hypothetical protein compare
CSW01_05355 -0.3 -1.8 DUF454 domain-containing protein compare
CSW01_09960 -0.3 -1.2 DUF1315 domain-containing protein compare
CSW01_06585 -0.3 -0.8 fumarate hydratase compare
CSW01_09300 -0.3 -1.2 prepilin peptidase compare
CSW01_15260 -0.3 -1.7 hypothetical protein compare
CSW01_00450 -0.3 -0.6 SCP2 domain-containing protein compare
CSW01_03975 -0.3 -1.3 exodeoxyribonuclease VII large subunit compare
CSW01_19275 -0.3 -1.4 amino acid ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_aerobic experiments

For lb_0.5%bileacids_aerobic LB_0.5%bileacids across organisms