Experiment set5IT074 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_aerobic_120MIN_ZN11A

200 most detrimental genes:

  gene name fitness t score description  
CSW01_18560 +1.6 2.0 hypothetical protein compare
CSW01_13445 +1.5 2.3 elongation factor P compare
CSW01_08070 +1.3 1.8 hypothetical protein compare
CSW01_07580 +1.2 1.7 hypothetical protein compare
CSW01_19210 +1.2 2.7 DUF3081 domain-containing protein compare
CSW01_17750 +1.1 1.5 cytochrome B compare
CSW01_10300 +1.0 3.9 chemotaxis protein CheW compare
CSW01_10655 +1.0 2.6 flagellar hook-basal body complex protein FliE compare
CSW01_17000 +1.0 1.6 DUF3332 domain-containing protein compare
CSW01_10155 +1.0 1.9 C4-dicarboxylate ABC transporter compare
CSW01_11025 +0.9 3.9 DUF2597 domain-containing protein compare
CSW01_11010 +0.8 5.9 lysozyme compare
CSW01_05225 +0.8 2.0 molybdopterin synthase sulfur carrier subunit compare
CSW01_10595 +0.8 6.3 flagellar biosynthetic protein FliP compare
CSW01_11000 +0.8 2.3 hypothetical protein compare
CSW01_11250 +0.8 4.3 molecular chaperone compare
CSW01_10590 +0.8 3.4 flagellar biosynthetic protein FliQ compare
CSW01_10660 +0.8 6.2 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_10675 +0.8 3.4 flagellar protein FliS compare
CSW01_11035 +0.8 4.9 phage virion morphogenesis protein compare
CSW01_10335 +0.8 5.0 RNA polymerase sigma factor FliA compare
CSW01_10665 +0.8 6.7 PAS domain-containing sensor histidine kinase compare
CSW01_02020 +0.8 2.0 phosphoadenosine phosphosulfate reductase compare
CSW01_10600 +0.8 3.4 flagellar biosynthetic protein FliO compare
CSW01_10605 +0.7 1.4 flagellar motor switch protein FliN compare
CSW01_10670 +0.7 4.4 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_10650 +0.7 6.2 flagellar basal body M-ring protein FliF compare
CSW01_18685 +0.7 1.0 heme utilization cystosolic carrier protein HutX compare
CSW01_12200 +0.7 2.9 ribosomal RNA small subunit methyltransferase H compare
CSW01_04580 +0.7 4.5 flagellar motor protein MotB compare
CSW01_10350 +0.7 5.7 flagellar biosynthesis protein FlhA compare
CSW01_09440 +0.7 3.5 PilZ domain-containing protein compare
CSW01_11195 +0.7 3.3 flagellar L-ring protein compare
CSW01_02170 +0.7 6.0 type II secretion system protein compare
CSW01_02105 +0.7 5.4 MSHA biogenesis protein MshI compare
CSW01_02140 +0.7 5.6 type II secretion system F family protein compare
CSW01_01830 +0.7 2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_02115 +0.7 4.4 MSHA biogenesis protein MshK compare
CSW01_02175 +0.7 4.9 MSHA biogenesis protein MshP compare
CSW01_10345 +0.7 4.5 flagellar biosynthesis protein FlhF compare
CSW01_11040 +0.7 3.8 hypothetical protein compare
CSW01_05925 +0.6 2.1 tryptophan synthase subunit alpha compare
CSW01_11060 +0.6 4.6 capsid protein compare
CSW01_02125 +0.6 5.0 MSHA biogenesis protein MshM compare
CSW01_10500 +0.6 3.2 CidA/LrgA family protein compare
CSW01_01870 +0.6 4.3 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
CSW01_10635 +0.6 4.4 flagellum-specific ATP synthase FliI compare
CSW01_00870 +0.6 3.4 cytochrome c5 family protein compare
CSW01_10645 +0.6 4.9 flagellar motor switch protein FliG compare
CSW01_13165 +0.6 5.0 sel1 repeat family protein compare
CSW01_11265 +0.6 4.5 flagellar basal-body protein compare
CSW01_11050 +0.6 3.8 terminase compare
CSW01_16185 +0.6 2.1 DUF3265 domain-containing protein compare
CSW01_02110 +0.6 4.3 MSHA biogenesis protein MshJ compare
CSW01_12845 +0.6 4.9 metalloprotease PmbA compare
CSW01_02120 +0.6 5.4 pilus (MSHA type) biogenesis protein MshL compare
CSW01_06835 +0.6 1.2 BAX inhibitor protein compare
CSW01_09495 +0.6 2.0 histidine triad nucleotide-binding protein compare
CSW01_02160 +0.6 4.6 MSHA pilin protein MshC compare
CSW01_11190 +0.6 4.1 flagellar P-ring protein compare
CSW01_02130 +0.6 5.0 MSHA biogenesis protein MshN compare
CSW01_10630 +0.6 3.3 flagella biosynthesis chaperone FliJ compare
CSW01_06375 +0.6 1.7 hypothetical protein compare
CSW01_11205 +0.6 4.3 flagellar basal-body rod protein FlgF compare
CSW01_10580 +0.6 4.1 flagellar biosynthesis protein FlhB compare
CSW01_17080 +0.6 1.2 DUF3319 domain-containing protein compare
CSW01_02180 +0.6 5.6 MSHA biogenesis protein MshQ compare
CSW01_07750 +0.6 0.8 hypothetical protein compare
CSW01_02210 +0.6 5.3 DUF3971 domain-containing protein compare
CSW01_00515 +0.6 2.1 hypothetical protein compare
CSW01_11200 +0.6 3.7 flagellar basal-body rod protein FlgG compare
CSW01_10640 +0.6 4.1 flagellar assembly protein FliH compare
CSW01_08390 +0.6 1.9 hypothetical protein compare
CSW01_18730 +0.6 1.4 DUF406 domain-containing protein compare
CSW01_10585 +0.6 4.2 flagellar type III secretion system protein FliR compare
CSW01_10730 +0.6 2.0 ArsC family reductase compare
CSW01_07135 +0.6 2.6 chromosome partitioning protein ParA compare
CSW01_17265 +0.6 1.5 hypothetical protein compare
CSW01_12780 +0.6 1.5 hypothetical protein compare
CSW01_15660 +0.6 0.9 cell shape-determining protein MreC compare
CSW01_11225 +0.6 3.9 flagellar basal body rod protein FlgB compare
CSW01_17675 +0.6 3.7 GGDEF domain-containing protein compare
CSW01_16140 +0.5 1.8 DUF645 domain-containing protein compare
CSW01_01975 +0.5 4.3 chemotaxis protein CheX compare
CSW01_04495 +0.5 1.2 hypothetical protein compare
CSW01_10620 +0.5 4.2 flagellar hook-length control protein FliK compare
CSW01_05130 +0.5 4.0 flagellar protein MotY compare
CSW01_08175 +0.5 1.2 hypothetical protein compare
CSW01_08670 +0.5 2.6 TVP38/TMEM64 family protein compare
CSW01_10080 +0.5 2.0 4-amino-4-deoxychorismate lyase compare
CSW01_02610 +0.5 4.7 hypothetical protein compare
CSW01_04850 +0.5 2.6 septal ring lytic transglycosylase RlpA compare
CSW01_17395 +0.5 1.8 hypothetical protein compare
CSW01_07330 +0.5 1.4 colonization factor compare
CSW01_15730 +0.5 0.8 VOC family protein compare
CSW01_11220 +0.5 1.7 flagellar basal body rod protein FlgC compare
CSW01_17055 +0.5 2.6 DNA-binding response regulator compare
CSW01_11170 +0.5 4.0 flagellin A compare
CSW01_07150 +0.5 0.8 spermidine/putrescine ABC transporter permease PotC compare
CSW01_11175 +0.5 3.6 flagellar hook-associated protein 3 compare
CSW01_02135 +0.5 4.2 MSHA biogenesis protein MshE compare
CSW01_11210 +0.5 3.6 flagellar hook protein FlgE compare
CSW01_12820 +0.5 1.8 ribosome hibernation promoting factor compare
CSW01_11045 +0.5 1.5 head protein compare
CSW01_10685 +0.5 4.1 flagellar hook-associated protein 2 compare
CSW01_02220 +0.5 4.3 metalloprotease TldD compare
CSW01_13295 +0.5 4.1 cell division protein DamX compare
CSW01_02600 +0.5 4.6 DUF3732 domain-containing protein compare
CSW01_01915 +0.5 2.0 bacterioferritin-associated ferredoxin compare
CSW01_16290 +0.5 0.8 DUF1289 domain-containing protein compare
CSW01_06380 +0.5 0.3 GTP cyclohydrolase II compare
CSW01_02460 +0.5 3.8 type IV pili twitching motility protein PilT compare
CSW01_03845 +0.5 0.5 hypothetical protein compare
CSW01_10980 +0.5 3.5 hypothetical protein compare
CSW01_17595 +0.5 0.8 TIGR02808 family protein compare
CSW01_02165 +0.5 3.3 MSHA pilin protein MshD compare
CSW01_16940 +0.5 2.7 LysR family transcriptional regulator compare
CSW01_01865 +0.5 3.4 hypothetical protein compare
CSW01_11020 +0.5 1.8 molecular chaperone DnaK compare
CSW01_08765 +0.5 2.4 TetR/AcrR family transcriptional regulator compare
CSW01_16910 +0.5 1.4 hypothetical protein compare
CSW01_10060 +0.5 2.4 YchF/TatD family DNA exonuclease compare
CSW01_08495 +0.5 1.9 hypothetical protein compare
CSW01_02605 +0.4 4.0 hypothetical protein compare
CSW01_08755 +0.4 2.0 DUF1496 domain-containing protein compare
CSW01_04575 +0.4 2.8 flagellar motor protein PomA compare
CSW01_04990 +0.4 1.7 hypothetical protein compare
CSW01_05050 +0.4 1.0 transcription/translation regulatory transformer protein RfaH compare
CSW01_10610 +0.4 2.6 flagellar motor switch protein FliM compare
CSW01_18230 +0.4 2.1 agmatinase compare
CSW01_10950 +0.4 3.0 hypothetical protein compare
CSW01_00675 +0.4 0.7 hypothetical protein compare
CSW01_07875 +0.4 2.3 cytochrome BD ubiquinol oxidase subunit II compare
CSW01_14770 +0.4 1.4 sodium:proton antiporter compare
CSW01_12730 +0.4 2.9 aspartate carbamoyltransferase regulatory subunit compare
CSW01_13800 +0.4 2.5 heat-shock protein Hsp15 compare
CSW01_06035 +0.4 1.0 hypothetical protein compare
CSW01_01325 +0.4 1.7 acetyltransferase compare
CSW01_01875 +0.4 1.7 hypothetical protein compare
CSW01_01970 +0.4 3.6 MBL fold metallo-hydrolase compare
CSW01_13950 +0.4 1.1 hypothetical protein compare
CSW01_02150 +0.4 2.4 MSHA biogenesis protein MshB compare
CSW01_11180 +0.4 3.2 flagellar hook-associated protein FlgK compare
CSW01_18195 +0.4 1.8 DUF3024 domain-containing protein compare
CSW01_11240 +0.4 2.7 flagella basal body P-ring formation protein FlgA compare
CSW01_05495 +0.4 2.0 histidine kinase compare
CSW01_05215 +0.4 1.8 molybdenum cofactor biosynthesis protein B compare
CSW01_11070 +0.4 2.3 phage portal protein compare
CSW01_11095 +0.4 2.0 DUF262 domain-containing protein compare
CSW01_07240 +0.4 2.9 histidine kinase compare
CSW01_11015 +0.4 2.4 hypothetical protein compare
CSW01_06810 +0.4 0.6 hypothetical protein compare
CSW01_07175 +0.4 1.6 DUF2987 domain-containing protein compare
CSW01_07445 +0.4 1.1 macrodomain Ter protein MatP compare
CSW01_02100 +0.4 3.3 RNase E specificity factor CsrD compare
CSW01_16130 +0.4 0.6 acetyltransferase compare
CSW01_11630 +0.4 1.9 DUF2884 domain-containing protein compare
CSW01_04135 +0.4 1.2 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
CSW01_09830 +0.4 2.2 XRE family transcriptional regulator compare
CSW01_07900 +0.4 1.6 hypothetical protein compare
CSW01_11055 +0.4 3.0 phage major capsid protein, P2 family compare
CSW01_13845 +0.4 1.1 hypothetical protein compare
CSW01_06050 +0.4 1.4 DUF2786 domain-containing protein compare
CSW01_03740 +0.4 2.1 oxygen-insensitive NADPH nitroreductase compare
CSW01_15595 +0.4 0.9 hypothetical protein compare
CSW01_06300 +0.4 1.3 DUF2750 domain-containing protein compare
CSW01_15585 +0.4 1.1 DUF645 domain-containing protein compare
CSW01_04360 +0.4 1.2 IS5/IS1182 family transposase compare
CSW01_09990 +0.4 0.9 hypothetical protein compare
CSW01_03545 +0.4 2.6 Na/Pi cotransporter family protein compare
CSW01_02075 +0.4 3.5 ligase compare
CSW01_11110 +0.4 1.6 DNA methyltransferase compare
CSW01_19510 +0.4 1.3 anti-sigma factor antagonist compare
CSW01_04540 +0.4 1.8 DUF3301 domain-containing protein compare
CSW01_05010 +0.4 2.1 phosphodiesterase compare
CSW01_16250 +0.4 1.4 C4-dicarboxylate ABC transporter compare
CSW01_14920 +0.4 1.1 NADH:ubiquinone oxidoreductase compare
CSW01_18185 +0.4 1.3 DEAD/DEAH box family ATP-dependent RNA helicase compare
CSW01_11075 +0.4 2.0 hypothetical protein compare
CSW01_08055 +0.4 1.4 amino acid ABC transporter substrate-binding protein compare
CSW01_08690 +0.4 1.9 glucose-1-phosphate adenylyltransferase compare
CSW01_12755 +0.4 0.9 anti-sigma B factor antagonist compare
CSW01_01980 +0.4 2.6 transcriptional regulator Zur compare
CSW01_08700 +0.4 1.7 DUF2498 domain-containing protein compare
CSW01_11005 +0.4 2.3 hypothetical protein compare
CSW01_12515 +0.4 0.9 DUF1107 domain-containing protein compare
CSW01_14210 +0.4 1.7 hypothetical protein compare
CSW01_11065 +0.4 3.1 terminase compare
CSW01_17320 +0.4 1.5 hypothetical protein compare
CSW01_01625 +0.4 2.3 N-acetyltransferase compare
CSW01_00770 +0.4 2.3 hypothetical protein compare
CSW01_17360 +0.4 1.1 GNAT family acetyltransferase compare
CSW01_05135 +0.4 2.0 DUF2753 domain-containing protein compare
CSW01_03270 +0.4 1.9 hypothetical protein compare
CSW01_02090 +0.4 2.7 helix-turn-helix transcriptional regulator compare
CSW01_10700 +0.4 2.6 flagellin D compare
CSW01_12245 +0.4 2.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
CSW01_05345 +0.4 2.2 two-component system response regulator compare
CSW01_16035 +0.4 1.1 DUF645 domain-containing protein compare
CSW01_01960 +0.4 2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_aerobic experiments

For lb_0.5%bileacids_aerobic LB_0.5%bileacids across organisms