Experiment set5IT074 for Shewanella loihica PV-4

Compare to:

MinMedia 30C

200 most detrimental genes:

  gene name fitness t score description  
Shew_1533 +3.7 29.8 acetyl-CoA synthetase (RefSeq) compare
Shew_1362 +3.2 14.3 sigma-54 dependent trancsriptional regulator (RefSeq) compare
Shew_1397 +3.0 15.5 amino acid/peptide transporter (RefSeq) compare
Shew_1819 +2.9 10.8 GntR family transcriptional regulator (RefSeq) compare
Shew_1004 +2.9 19.8 undecaprenyl pyrophosphate phosphatase (RefSeq) compare
Shew_0383 +2.7 20.1 malate dehydrogenase (RefSeq) compare
Shew_1348 flgE +2.3 6.6 flagellar hook protein FlgE (RefSeq) compare
Shew_1371 +2.2 10.3 flagellar hook-length control protein (RefSeq) compare
Shew_0086 +2.2 20.1 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_1405 +2.2 19.2 glycosyl transferase, group 1 (RefSeq) compare
Shew_1401 +2.1 16.1 dTDP-glucose 4,6 dehydratase (RefSeq) compare
Shew_3710 tdh +2.1 16.1 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_1407 +2.1 19.4 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1327 +2.0 13.8 hypothetical protein (RefSeq) compare
Shew_1437 +2.0 17.0 transcriptional regulator, TyrR (RefSeq) compare
Shew_1398 +1.9 7.6 NusG antitermination factor (RefSeq) compare
Shew_1809 +1.9 7.8 NAD-glutamate dehydrogenase (RefSeq) compare
Shew_1357 +1.9 11.4 flagellin domain-containing protein (RefSeq) compare
Shew_1927 +1.9 3.7 dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_1361 fliS +1.9 16.0 flagellar protein FliS (RefSeq) compare
Shew_1383 fliA +1.9 11.0 flagellar biosynthesis sigma factor (RefSeq) compare
Shew_2584 +1.9 15.6 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_1350 flgG +1.9 8.3 flagellar basal body rod protein FlgG (RefSeq) compare
Shew_1325 +1.9 13.8 acetyltransferase-like protein (RefSeq) compare
Shew_1353 flgJ +1.8 6.3 peptidoglycan hydrolase (RefSeq) compare
Shew_1324 +1.8 8.4 hypothetical protein (RefSeq) compare
Shew_0777 +1.8 4.6 two-component response regulator (RefSeq) compare
Shew_1319 +1.8 10.5 DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) compare
Shew_2767 motB +1.8 12.5 flagellar motor protein MotB (RefSeq) compare
Shew_1349 flgF +1.8 11.2 flagellar basal body rod protein FlgF (RefSeq) compare
Shew_3709 +1.8 7.5 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_1925 +1.8 10.6 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq) compare
Shew_1926 +1.7 9.5 transketolase, central region (RefSeq) compare
Shew_1411 +1.7 11.4 hexapaptide repeat-containing transferase (RefSeq) compare
Shew_1329 +1.7 15.1 N-acylneuraminate-9-phosphate synthase (RefSeq) compare
Shew_1334 +1.7 12.0 3-oxoacyl-(acyl-carrier-protein) synthase (RefSeq) compare
Shew_3708 +1.7 15.8 TetR family transcriptional regulator (RefSeq) compare
Shew_1352 flgI +1.7 7.0 flagellar basal body P-ring protein (RefSeq) compare
Shew_1322 +1.6 9.5 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_2768 +1.6 12.3 flagellar motor protein PomA (RefSeq) compare
Shew_1347 flgD +1.6 6.3 flagellar basal body rod modification protein (RefSeq) compare
Shew_1555 +1.6 4.4 Glu/Leu/Phe/Val dehydrogenase, dimerisation region (RefSeq) compare
Shew_1318 +1.6 10.9 polysaccharide biosynthesis protein CapD (RefSeq) compare
Shew_2573 +1.6 14.7 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_2421 +1.6 15.4 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) compare
Shew_1332 +1.6 12.9 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1369 fliI +1.6 11.4 flagellum-specific ATP synthase (RefSeq) compare
Shew_1326 +1.6 11.4 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1328 +1.6 13.0 acylneuraminate cytidylyltransferase (RefSeq) compare
Shew_3689 +1.5 5.5 hypothetical protein (RefSeq) compare
Shew_1667 +1.5 6.7 acetyl-CoA acetyltransferase (RefSeq) compare
Shew_1333 +1.5 9.8 3-oxoacyl-(acyl-carrier-protein) synthase (RefSeq) compare
Shew_0225 +1.5 2.1 phosphoheptose isomerase (RefSeq) compare
Shew_1323 +1.5 5.2 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein (RefSeq) compare
Shew_3691 +1.5 2.3 hypothetical protein (RefSeq) compare
Shew_0866 +1.4 2.5 arginine repressor (RefSeq) compare
Shew_3267 +1.4 10.9 sodium/hydrogen exchanger (RefSeq) compare
Shew_2571 +1.4 7.7 propionyl-CoA carboxylase (RefSeq) compare
Shew_1359 +1.4 3.8 flagellar hook-associated 2 domain-containing protein (RefSeq) compare
Shew_1317 +1.4 12.5 TPR repeat-containing protein (RefSeq) compare
Shew_1355 flgL +1.4 6.5 flagellar hook-associated protein FlgL (RefSeq) compare
Shew_1370 +1.3 2.8 flagellar export protein FliJ (RefSeq) compare
Shew_1368 +1.3 5.5 flagellar assembly protein FliH (RefSeq) compare
Shew_1365 +1.3 3.6 flagellar hook-basal body complex subunit FliE (RefSeq) compare
Shew_0470 +1.3 2.3 MATE efflux family protein (RefSeq) compare
Shew_2110 +1.2 8.0 hypothetical protein (RefSeq) compare
Shew_1340 +1.2 10.9 FlgN family protein (RefSeq) compare
Shew_1625 +1.2 4.6 L-serine dehydratase 1 (RefSeq) compare
Shew_1559 +1.2 1.9 hypothetical protein (RefSeq) compare
Shew_1521 +1.2 3.5 OmpA/MotB domain-containing protein (RefSeq) compare
Shew_2576 +1.2 6.3 3-oxoacid CoA-transferase, B subunit (RefSeq) compare
Shew_1354 +1.2 4.3 flagellar hook-associated protein FlgK (RefSeq) compare
Shew_3805 +1.2 5.5 rhodanese domain-containing protein (RefSeq) compare
Shew_2436 +1.2 6.4 membrane protein involved in aromatic hydrocarbon degradation (RefSeq) compare
Shew_3742 +1.1 7.8 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Shew_1363 +1.1 10.9 PAS/PAC sensor signal transduction histidine kinase (RefSeq) compare
Shew_3759 +1.1 7.2 imidazolonepropionase (RefSeq) compare
Shew_1380 flhA +1.1 8.6 flagellar biosynthesis protein FlhA (RefSeq) compare
Shew_1364 +1.1 7.8 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1433 +1.1 6.9 UDP-glucose 4-epimerase (RefSeq) compare
Shew_2570 +1.0 7.7 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_2141 +1.0 5.9 lytic murein transglycosylase (RefSeq) compare
Shew_1331 +1.0 7.7 spore coat polysaccharide biosynthesis protein glycosyltransferase-like (RefSeq) compare
Shew_1400 +1.0 1.8 lipopolysaccharide biosynthesis protein (RefSeq) compare
Shew_1417 +1.0 4.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase (RefSeq) compare
Shew_1376 fliP +0.9 5.1 flagellar biosynthesis protein FliP (RefSeq) compare
Shew_2821 +0.9 6.7 lipoprotein NlpI (RefSeq) compare
Shew_2087 +0.9 4.8 hypothetical protein (RefSeq) compare
Shew_0711 +0.9 6.5 phosphoglycerate mutase (RefSeq) compare
Shew_0284 +0.9 6.4 hypothetical protein (RefSeq) compare
Shew_1379 flhB +0.9 4.7 flagellar biosynthesis protein FlhB (RefSeq) compare
Shew_2176 +0.8 1.6 disulphide bond formation protein DsbB (RefSeq) compare
Shew_2188 +0.8 5.2 long-chain-fatty-acid--CoA ligase (RefSeq) compare
Shew_3323 +0.8 1.9 lipase-like (RefSeq) compare
Shew_0023 +0.8 5.9 protoporphyrinogen oxidase (RefSeq) compare
Shew_2814 deoA +0.8 3.5 thymidine phosphorylase (RefSeq) compare
Shew_1374 fliN +0.8 1.5 flagellar motor switch protein (RefSeq) compare
Shew_3711 +0.8 1.0 rhodanese domain-containing protein (RefSeq) compare
Shew_1920 +0.8 5.4 alpha/beta hydrolase fold (RefSeq) compare
Shew_1337 +0.8 4.7 hypothetical protein (RefSeq) compare
Shew_1668 +0.8 6.7 methylmalonate-semialdehyde dehydrogenase (RefSeq) compare
Shew_1183 +0.8 4.5 putative ABC transporter ATP-binding protein (RefSeq) compare
Shew_1669 +0.8 4.0 butyryl-CoA dehydrogenase (RefSeq) compare
Shew_2480 +0.8 5.3 TonB-dependent receptor (RefSeq) compare
Shew_1976 +0.7 5.4 putative ATP-dependent protease La-relatedprotein (RefSeq) compare
Shew_0326 +0.7 4.1 HAD family hydrolase (RefSeq) compare
Shew_1375 +0.7 3.5 flagellar biosynthesis protein, FliO (RefSeq) compare
Shew_2918 +0.7 1.1 hypothetical protein (RefSeq) compare
Shew_2134 +0.7 3.0 heat shock protein Hsp20 (RefSeq) compare
Shew_2481 +0.7 4.7 porin (RefSeq) compare
Shew_3404 +0.7 1.1 NosL family protein (RefSeq) compare
Shew_0308 +0.7 4.5 hypothetical protein (RefSeq) compare
Shew_3271 +0.7 5.6 galactokinase (RefSeq) compare
Shew_2237 +0.7 1.7 hypothetical protein (RefSeq) compare
Shew_2155 +0.7 2.2 4-hydroxyphenylpyruvate dioxygenase (RefSeq) compare
Shew_1014 +0.7 0.9 XRE family transcriptional regulator (RefSeq) compare
Shew_0583 +0.6 1.9 two component transcriptional regulator (RefSeq) compare
Shew_3290 +0.6 0.7 Sel1 domain-containing protein (RefSeq) compare
Shew_3192 +0.6 2.4 hypothetical protein (RefSeq) compare
Shew_1523 +0.6 0.9 4-hydroxybenzoyl-CoA thioesterase (RefSeq) compare
Shew_0450 +0.6 2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_0395 +0.6 1.9 methylation site containing protein (RefSeq) compare
Shew_2394 +0.6 2.2 phosphate acetyltransferase (RefSeq) compare
Shew_1011 +0.6 3.7 citrate transporter (RefSeq) compare
Shew_0618 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_2813 +0.6 1.0 phosphopentomutase (RefSeq) compare
Shew_1456 +0.6 2.1 phospholipase D/transphosphatidylase (RefSeq) compare
Shew_2905 +0.6 4.7 hypothetical protein (RefSeq) compare
Shew_1524 +0.6 2.7 MotA/TolQ/ExbB proton channel (RefSeq) compare
Shew_0446 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_2812 deoD +0.6 2.5 purine nucleoside phosphorylase (RefSeq) compare
Shew_2469 +0.6 1.0 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_3786 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_2572 +0.6 2.5 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_0858 +0.6 1.6 oxidoreductase FAD/NAD(P)-binding subunit (RefSeq) compare
Shew_2907 +0.6 2.1 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_0092 +0.6 2.5 molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq) compare
Shew_0495 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_1978 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_1609 +0.6 1.2 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq) compare
Shew_0900 +0.6 2.2 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_1528 +0.6 1.7 OmpA domain-containing protein (RefSeq) compare
Shew_1278 +0.6 0.7 hypothetical protein (RefSeq) compare
Shew_0084 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_0339 +0.5 3.3 ATP-dependent RNA helicase RhlB (RefSeq) compare
Shew_0854 +0.5 2.6 hypothetical protein (RefSeq) compare
Shew_0840 +0.5 2.9 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_2891 +0.5 3.7 hypothetical protein (RefSeq) compare
Shew_1404 +0.5 4.0 dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) compare
Shew_2407 +0.5 2.6 putative periplasmic protease (RefSeq) compare
Shew_2857 +0.5 1.7 LysR family transcriptional regulator (RefSeq) compare
Shew_1396 +0.5 3.4 response regulator receiver protein (RefSeq) compare
Shew_2769 +0.5 3.0 exodeoxyribonuclease VII, small subunit (RefSeq) compare
Shew_1438 +0.5 2.3 fumarylacetoacetate (FAA) hydrolase (RefSeq) compare
Shew_0229 +0.5 1.2 extracellular solute-binding protein (RefSeq) compare
Shew_1078 +0.5 3.8 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_0730 +0.5 1.0 protein of unknown function DUF395, YeeE/YedE (RefSeq) compare
Shew_2483 dinG +0.5 2.0 ATP-dependent DNA helicase DinG (RefSeq) compare
Shew_0795 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_0112 +0.5 2.0 CheW protein (RefSeq) compare
Shew_2391 pflA +0.5 1.9 pyruvate formate lyase-activating enzyme 1 (RefSeq) compare
Shew_2349 +0.5 3.2 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_2999 +0.5 2.2 hypothetical protein (RefSeq) compare
Shew_0917 +0.5 2.1 LysR family transcriptional regulator (RefSeq) compare
Shew_1173 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_3150 +0.5 0.8 antibiotic biosynthesis monooxygenase (RefSeq) compare
Shew_3607 +0.5 3.7 putative methyltransferase (RefSeq) compare
Shew_0538 +0.5 1.0 phage shock protein C, PspC (RefSeq) compare
Shew_0394 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_3222 +0.5 1.7 protein of unknown function DUF335, SprT (RefSeq) compare
Shew_2893 +0.5 1.8 nucleotide-binding protein (RefSeq) compare
Shew_3045 +0.5 1.9 sugar-binding protein, putative (RefSeq) compare
Shew_0094 +0.5 3.9 ABC transporter-related protein (RefSeq) compare
Shew_3436 +0.5 4.1 methylation site containing protein (RefSeq) compare
Shew_0261 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_0302 +0.5 4.1 phosphoesterase, PA-phosphatase related (RefSeq) compare
Shew_3522 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_2415 +0.5 1.1 major facilitator transporter (RefSeq) compare
Shew_1302 +0.4 2.8 cytochrome bd ubiquinol oxidase, subunit I (RefSeq) compare
Shew_1660 +0.4 0.6 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0416 +0.4 3.7 peptidase U62, modulator of DNA gyrase (RefSeq) compare
Shew_2406 +0.4 1.4 AraC family transcriptional regulator (RefSeq) compare
Shew_0739 +0.4 3.1 aromatic amino acid permease (RefSeq) compare
Shew_2910 +0.4 0.7 hypothetical protein (RefSeq) compare
Shew_0022 +0.4 3.2 TrkH family potassium uptake protein (RefSeq) compare
Shew_0233 +0.4 1.7 hypothetical protein (RefSeq) compare
Shew_0834 +0.4 0.6 hypothetical protein (RefSeq) compare
Shew_1961 +0.4 1.6 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_2185 +0.4 2.8 septum site-determining protein MinD (RefSeq) compare
Shew_3787 mogA +0.4 2.6 molybdenum cofactor biosynthesis protein (RefSeq) compare
Shew_2385 +0.4 2.3 TonB-dependent receptor, plug (RefSeq) compare
Shew_1631 +0.4 1.2 hypothetical protein (RefSeq) compare
Shew_0743 +0.4 3.3 sodium:dicarboxylate symporter (RefSeq) compare
Shew_1163 +0.4 1.3 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_2392 +0.4 1.5 hypothetical protein (RefSeq) compare
Shew_2544 +0.4 1.0 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_1455 +0.4 0.7 dual specificity protein phosphatase (RefSeq) compare
Shew_3623 +0.4 3.1 phosphoenolpyruvate carboxykinase (RefSeq) compare
Shew_2976 +0.4 1.7 hypothetical protein (RefSeq) compare
Shew_0309 +0.4 3.4 OmpA/MotB domain-containing protein (RefSeq) compare


Specific Phenotypes

For 14 genes in this experiment