Experiment set5IT074 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_09040 -5.1 -2.2 NAD-dependent epimerase compare
IAI47_02350 -4.7 -1.2 tRNA-Thr compare
IAI47_11375 -4.4 -2.2 hypothetical protein compare
IAI47_13685 -4.1 -3.0 Tol-Pal system protein TolB compare
IAI47_13885 -3.6 -1.8 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_07930 -3.6 -2.1 DUF2158 domain-containing protein compare
IAI47_08085 -3.5 -7.4 helix-turn-helix domain-containing protein compare
IAI47_16390 -3.4 -0.8 tRNA-Leu compare
IAI47_13740 -3.3 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_17560 -3.3 -1.9 ROK family transcriptional regulator compare
IAI47_05070 -3.2 -0.8 outer membrane protein assembly factor BamB compare
IAI47_09580 -3.1 -4.9 FNR family transcription factor compare
IAI47_15485 -3.0 -1.3 molecular chaperone Skp compare
IAI47_13700 -3.0 -5.2 Tol-Pal system protein TolQ compare
IAI47_13695 -2.8 -0.7 colicin uptake protein TolR compare
IAI47_07165 -2.7 -1.8 exodeoxyribonuclease I compare
IAI47_08705 -2.7 -13.4 carboxy terminal-processing peptidase compare
IAI47_10845 -2.6 -4.0 major outer membrane lipoprotein compare
IAI47_00870 -2.6 -0.9 50S ribosomal protein L31 compare
IAI47_11760 -2.6 -1.4 TonB-dependent siderophore receptor compare
IAI47_09235 -2.5 -1.2 type I DNA topoisomerase compare
IAI47_21880 -2.5 -0.9 ParA family protein compare
IAI47_15635 -2.4 -1.9 RNA polymerase-binding protein DksA compare
IAI47_05745 -2.3 -1.5 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_04895 -2.3 -3.8 pyridoxine 5'-phosphate synthase compare
IAI47_08700 -2.3 -6.4 RNA chaperone ProQ compare
IAI47_13950 -2.3 -1.1 PhoH family protein compare
IAI47_00300 -2.2 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_02090 -2.2 -4.3 elongation factor Tu compare
IAI47_18145 -2.1 -2.5 elongation factor Tu compare
IAI47_16095 -2.1 -4.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_11515 -2.1 -1.8 hypothetical protein compare
IAI47_00780 -2.0 -4.6 6-phosphofructokinase compare
IAI47_14945 -2.0 -3.7 pyrroline-5-carboxylate reductase compare
IAI47_16420 -2.0 -10.7 LacI family DNA-binding transcriptional regulator compare
IAI47_05155 -2.0 -12.0 polyphosphate kinase 1 compare
IAI47_06325 -1.9 -6.6 acetate kinase compare
IAI47_10835 -1.9 -0.8 tRNA-Val compare
IAI47_09305 -1.9 -3.5 cyclic di-GMP phosphodiesterase compare
IAI47_11830 -1.9 -4.2 muramoyltetrapeptide carboxypeptidase compare
IAI47_18480 -1.9 -6.8 lipid III flippase WzxE compare
IAI47_18415 -1.9 -4.2 lipoprotein compare
IAI47_15005 -1.8 -1.4 hypothetical protein compare
IAI47_12865 -1.8 -9.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_17235 -1.8 -8.0 stringent starvation protein A compare
IAI47_18470 -1.8 -10.0 ECA oligosaccharide polymerase compare
IAI47_17385 -1.8 -2.9 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_16350 -1.8 -7.2 phosphoserine phosphatase compare
IAI47_03725 -1.7 -5.2 phosphoglycerate dehydrogenase compare
IAI47_05580 -1.7 -1.3 membrane protein YpdK compare
IAI47_15595 -1.7 -2.0 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_08445 -1.7 -1.0 Holliday junction branch migration protein RuvA compare
IAI47_10840 -1.7 -4.2 pyruvate kinase PykF compare
IAI47_09055 -1.7 -9.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_04120 -1.7 -10.6 GTP diphosphokinase compare
IAI47_21830 -1.7 -1.1 hypothetical protein compare
IAI47_05425 -1.7 -4.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_03375 -1.7 -8.5 peptide chain release factor 3 compare
IAI47_14075 -1.7 -2.2 transcription antiterminator/RNA stability regulator CspE compare
IAI47_21665 -1.7 -2.2 DUF333 domain-containing protein compare
IAI47_08300 -1.7 -8.0 chemotaxis protein CheA compare
IAI47_02380 -1.6 -1.9 DNA-binding transcriptional regulator Fis compare
IAI47_06135 -1.6 -4.0 phosphohistidine phosphatase SixA compare
IAI47_16190 -1.6 -3.6 molybdopterin adenylyltransferase compare
IAI47_04300 -1.6 -5.8 recombinase RecA compare
IAI47_21450 -1.6 -1.3 general stress protein compare
IAI47_11415 -1.6 -1.1 hypothetical protein compare
IAI47_06235 -1.6 -4.8 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_02585 -1.6 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_05325 -1.6 -2.1 DUF1471 domain-containing protein compare
IAI47_07025 -1.6 -3.7 glycosyltransferase family 4 protein compare
IAI47_09360 -1.5 -1.2 peptide ABC transporter ATP-binding protein SapF compare
IAI47_04800 -1.5 -0.9 RnfH family protein compare
IAI47_03820 -1.5 -2.9 site-specific tyrosine recombinase XerD compare
IAI47_07010 -1.5 -2.6 ABC transporter permease compare
IAI47_04425 -1.5 -7.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_13925 -1.5 -1.8 tRNA-Met compare
IAI47_18490 -1.5 -3.0 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_00500 -1.5 -8.5 ATP-dependent DNA helicase RecG compare
IAI47_12060 -1.5 -4.2 beta-ketoacyl-ACP synthase II compare
IAI47_00930 -1.4 -5.8 DNA-binding transcriptional regulator OxyR compare
IAI47_11310 -1.4 -3.1 redox-regulated ATPase YchF compare
IAI47_06940 -1.4 -0.7 tyrosine-protein kinase Wzc compare
IAI47_12880 -1.4 -9.5 formate C-acetyltransferase compare
IAI47_18830 -1.4 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_04400 -1.4 -4.5 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_07450 -1.4 -2.3 winged helix-turn-helix domain-containing protein compare
IAI47_16870 -1.4 -4.7 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_11480 -1.4 -2.1 hypothetical protein compare
IAI47_03680 -1.4 -7.2 transketolase compare
IAI47_03645 -1.4 -9.0 O-antigen ligase family protein compare
IAI47_17120 -1.4 -1.9 BolA family iron metabolism protein IbaG compare
IAI47_18520 -1.3 -7.8 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_13485 -1.3 -3.6 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_10775 -1.3 -3.5 ribonuclease T compare
IAI47_11420 -1.3 -1.9 hypothetical protein compare
IAI47_07525 -1.3 -1.9 conjugal transfer protein TraD compare
IAI47_13480 -1.3 -1.9 molybdopterin synthase sulfur carrier subunit compare
IAI47_12470 -1.3 -7.9 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_10470 -1.3 -1.6 electron transport complex subunit E compare
IAI47_08325 -1.3 -5.6 protein-glutamate O-methyltransferase CheR compare
IAI47_07015 -1.3 -3.8 ABC transporter ATP-binding protein compare
IAI47_12275 -1.3 -8.8 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_16990 -1.3 -2.9 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_16490 -1.3 -3.3 PTS sugar transporter subunit IIA compare
IAI47_18400 -1.3 -2.1 tyrosine recombinase XerC compare
IAI47_12925 -1.3 -2.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_12645 -1.3 -2.0 porin OmpA compare
IAI47_12885 -1.2 -5.6 pyruvate formate lyase 1-activating protein compare
IAI47_08330 -1.2 -5.0 chemotaxis response regulator protein-glutamate methylesterase compare
IAI47_02320 -1.2 -2.8 DUF1488 domain-containing protein compare
IAI47_18530 -1.2 -1.6 thioredoxin TrxA compare
IAI47_04110 -1.2 -9.9 two-component sensor histidine kinase BarA compare
IAI47_06900 -1.2 -2.0 phosphatase PAP2 family protein compare
IAI47_10415 -1.2 -3.6 ABC transporter permease compare
IAI47_07065 -1.2 -5.1 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_04865 -1.2 -1.4 SoxR-reducing system protein RseC compare
IAI47_00760 -1.2 -2.2 envelope stress response regulator transcription factor CpxR compare
IAI47_09185 -1.2 -3.0 glutamine amidotransferase compare
IAI47_17000 -1.2 -5.0 lipoprotein NlpI compare
IAI47_14545 -1.2 -3.2 hypothetical protein compare
IAI47_17215 -1.2 -0.8 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_13495 -1.2 -4.2 GTP 3',8-cyclase MoaA compare
IAI47_00675 -1.2 -7.5 glycosyltransferase family 9 protein compare
IAI47_04870 -1.2 -3.5 elongation factor 4 compare
IAI47_12280 -1.2 -6.5 glucan biosynthesis protein G compare
IAI47_04835 -1.2 -5.1 ATP-dependent RNA helicase SrmB compare
IAI47_09545 -1.2 -3.8 two-component system response regulator RstA compare
IAI47_03860 -1.2 -5.8 diaminopimelate decarboxylase compare
IAI47_07475 -1.1 -0.8 hypothetical protein compare
IAI47_00375 -1.1 -8.3 ribose operon transcriptional repressor RbsR compare
IAI47_08335 -1.1 -3.9 chemotaxis response regulator CheY compare
IAI47_13475 -1.1 -2.4 molybdopterin synthase catalytic subunit MoaE compare
IAI47_03195 -1.1 -3.1 cell division protein FtsP compare
IAI47_10320 -1.1 -0.6 Rrf2 family transcriptional regulator compare
IAI47_00330 -1.1 -7.7 low affinity potassium transporter Kup compare
IAI47_00940 -1.1 -5.0 HTH-type transcriptional repressor FabR compare
IAI47_19550 -1.1 -1.2 DUF1471 domain-containing protein compare
IAI47_06565 -1.1 -1.0 YejL family protein compare
IAI47_15120 -1.1 -3.8 glutamate 5-kinase compare
IAI47_16080 -1.1 -4.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_02695 -1.1 -5.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_07070 -1.1 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_07080 -1.1 -4.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_11880 -1.1 -1.9 hypothetical protein compare
IAI47_03640 -1.1 -6.6 glycosyltransferase compare
IAI47_00430 -1.1 -7.0 DNA polymerase I compare
IAI47_16830 -1.1 -5.8 ornithine carbamoyltransferase compare
IAI47_12355 -1.0 -1.9 hydroxymyristoyl-ACP dehydratase compare
IAI47_12740 -1.0 -2.0 aliphatic sulfonates ABC transporter ATP-binding protein compare
IAI47_16085 -1.0 -0.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_17965 -1.0 -5.9 glucose-6-phosphate isomerase compare
IAI47_09395 -1.0 -1.5 phage shock protein PspA compare
IAI47_07030 -1.0 -3.4 HAD family hydrolase compare
IAI47_17005 -1.0 -4.1 polyribonucleotide nucleotidyltransferase compare
IAI47_12180 -1.0 -3.3 flagellar export chaperone FlgN compare
IAI47_16120 -1.0 -4.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_08145 -1.0 -6.8 flagellin FliC compare
IAI47_06120 -1.0 -2.1 YfcZ/YiiS family protein compare
IAI47_02305 -1.0 -2.6 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
IAI47_19710 -1.0 -2.2 helix-turn-helix transcriptional regulator compare
IAI47_07975 -1.0 -3.3 flagellar biosynthesis protein FliQ compare
IAI47_00670 -1.0 -7.1 sugar glycosyltransferase compare
IAI47_05305 -1.0 -2.9 ArsC family reductase compare
IAI47_08305 -1.0 -3.8 chemotaxis protein CheW compare
IAI47_06320 -1.0 -3.4 phosphate acetyltransferase compare
IAI47_02385 -1.0 -5.4 tRNA dihydrouridine synthase DusB compare
IAI47_09165 -1.0 -3.3 tryptophan synthase subunit alpha compare
IAI47_16600 -1.0 -0.8 tRNA-OTHER compare
IAI47_02705 -1.0 -4.9 DUF1107 domain-containing protein compare
IAI47_02040 -0.9 -3.2 peptidylprolyl isomerase compare
IAI47_08105 -0.9 -1.2 DinI family protein compare
IAI47_12105 -0.9 -4.0 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI47_05795 -0.9 -2.4 hypothetical protein compare
IAI47_08135 -0.9 -4.7 flagellar export chaperone FliS compare
IAI47_18740 -0.9 -4.8 formate dehydrogenase accessory sulfurtransferase FdhD compare
IAI47_12930 -0.9 -1.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_11395 -0.9 -3.6 hypothetical protein compare
IAI47_16610 -0.9 -2.0 hypothetical protein compare
IAI47_19365 -0.9 -2.6 DUF1471 domain-containing protein compare
IAI47_07135 -0.9 -3.3 DeoR/GlpR transcriptional regulator compare
IAI47_07470 -0.9 -1.4 AlpA family transcriptional regulator compare
IAI47_09380 -0.9 -3.8 peptide ABC transporter substrate-binding protein SapA compare
IAI47_01765 -0.9 -3.8 DeoR/GlpR family transcriptional regulator compare
IAI47_05050 -0.9 -2.4 cytoskeleton protein RodZ compare
IAI47_10725 -0.9 -1.3 DUF1656 domain-containing protein compare
IAI47_06910 -0.9 -2.6 dCTP deaminase compare
IAI47_07955 -0.9 -1.5 protein DsrB compare
IAI47_06245 -0.9 -2.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_09210 -0.9 -2.7 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_15540 -0.9 -4.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_05895 -0.8 -2.1 hypothetical protein compare
IAI47_11450 -0.8 -2.7 ankyrin repeat domain-containing protein compare
IAI47_16250 -0.8 -2.3 inosine/xanthosine triphosphatase compare
IAI47_03975 -0.8 -4.9 amino-acid N-acetyltransferase compare
IAI47_14660 -0.8 -4.1 trigger factor compare
IAI47_00505 -0.8 -3.5 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_09010 -0.8 -2.8 formyltetrahydrofolate deformylase compare
IAI47_15840 -0.8 -3.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
IAI47_17155 -0.8 -4.3 calcium/sodium antiporter compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms