Experiment set5IT073 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Aerobic_120MIN_ZN10B

200 most important genes:

  gene name fitness t score description  
CSW01_11535 -2.6 -7.6 thiamine-phosphate kinase compare
CSW01_01295 -2.6 -1.7 ABC transporter permease compare
CSW01_01300 -2.5 -4.9 sugar ABC transporter compare
CSW01_05575 -2.2 -4.0 phosphate acetyltransferase compare
CSW01_01425 -1.9 -1.9 phosphoribosylamine--glycine ligase compare
CSW01_18350 -1.9 -1.2 cell division protein DedD compare
CSW01_11730 -1.8 -3.1 2-dehydropantoate 2-reductase compare
CSW01_13305 -1.8 -2.7 shikimate kinase compare
CSW01_02875 -1.6 -6.3 DNA recombination/repair protein RecA compare
CSW01_13420 -1.6 -3.0 elongation factor P--(R)-beta-lysine ligase compare
CSW01_13805 -1.5 -3.7 Hsp33 family molecular chaperone HslO compare
CSW01_13285 -1.4 -2.8 ribulose-phosphate 3-epimerase compare
CSW01_00560 -1.4 -2.9 DNA polymerase I compare
CSW01_03870 -1.3 -1.4 inositol monophosphatase compare
CSW01_09240 -1.3 -3.5 Holliday junction branch migration DNA helicase RuvB compare
CSW01_08450 -1.3 -2.1 antimicrobial peptide ABC transporter permease SapB compare
CSW01_14910 -1.1 -1.9 cold-shock protein compare
CSW01_00650 -1.1 -6.2 tyrosine recombinase XerC compare
CSW01_11565 -1.1 -1.6 transcriptional regulator NrdR compare
CSW01_03985 -1.1 -3.1 GMP synthase (glutamine-hydrolyzing) compare
CSW01_02970 -1.0 -5.1 glutamate--cysteine ligase compare
CSW01_09525 -1.0 -0.7 DNA translocase FtsK compare
CSW01_10190 -1.0 -3.4 nucleoid-associated protein compare
CSW01_12250 -1.0 -4.8 site-specific tyrosine recombinase XerD compare
CSW01_10875 -1.0 -2.9 redox-regulated ATPase YchF compare
CSW01_10710 -1.0 -6.5 deferrochelatase compare
CSW01_05265 -1.0 -1.4 methionine--tRNA ligase compare
CSW01_12320 -0.9 -1.7 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_14680 -0.9 -1.5 aminotransferase compare
CSW01_03325 -0.9 -1.8 porin compare
CSW01_02490 -0.9 -4.6 glutathione synthetase compare
CSW01_12255 -0.9 -2.4 flavodoxin FldB compare
CSW01_03155 -0.9 -5.1 RNA polymerase-binding transcription factor DksA compare
CSW01_03410 -0.9 -1.7 polyribonucleotide nucleotidyltransferase compare
CSW01_06585 -0.8 -1.4 fumarate hydratase compare
CSW01_09245 -0.8 -2.9 Holliday junction branch migration protein RuvA compare
CSW01_03075 -0.8 -2.1 phosphoheptose isomerase compare
CSW01_05580 -0.8 -3.3 acetate kinase compare
CSW01_07155 -0.8 -1.8 spermidine/putrescine ABC transporter permease PotB compare
CSW01_05020 -0.8 -2.7 regulatory protein ToxS compare
CSW01_00095 -0.8 -1.8 hypothetical protein compare
CSW01_01015 -0.8 -5.5 DNA helicase II compare
CSW01_07460 -0.8 -1.2 ribosome modulation factor compare
CSW01_03475 -0.7 -2.2 ATP-dependent RNA helicase SrmB compare
CSW01_03915 -0.7 -1.8 Fe-S assembly protein IscX compare
CSW01_14085 -0.7 -1.1 transcriptional regulator compare
CSW01_02755 -0.7 -1.5 glutamyl-tRNA amidotransferase compare
CSW01_03695 -0.7 -2.4 ribosomal large subunit pseudouridine synthase D compare
CSW01_08435 -0.7 -3.4 phage shock protein PspA compare
CSW01_04910 -0.7 -1.7 PhoH family protein compare
CSW01_11690 -0.7 -4.8 hypothetical protein compare
CSW01_19435 -0.7 -1.3 hypothetical protein compare
CSW01_04375 -0.7 -1.8 SsrA-binding protein compare
CSW01_13300 -0.7 -3.6 3-dehydroquinate synthase compare
CSW01_00065 -0.7 -4.4 DNA replication and repair protein RecF compare
CSW01_01245 -0.7 -2.4 lipopolysaccharide heptosyltransferase II compare
CSW01_08465 -0.7 -1.1 ABC transporter ATP-binding protein compare
CSW01_06435 -0.6 -3.2 C4-dicarboxylate ABC transporter compare
CSW01_03980 -0.6 -4.0 IMP dehydrogenase compare
CSW01_06015 -0.6 -3.7 NAD-dependent malic enzyme compare
CSW01_13395 -0.6 -3.4 PadR family transcriptional regulator compare
CSW01_06325 -0.6 -1.0 hypothetical protein compare
CSW01_01265 -0.6 -1.7 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_18525 -0.6 -1.5 integrase compare
CSW01_11915 -0.6 -2.2 hypothetical protein compare
CSW01_00450 -0.6 -1.3 SCP2 domain-containing protein compare
CSW01_10380 -0.6 -1.7 iron transporter FeoC compare
CSW01_14055 -0.6 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_04850 -0.6 -3.4 septal ring lytic transglycosylase RlpA compare
CSW01_16310 -0.6 -1.0 DUF3709 domain-containing protein compare
CSW01_14125 -0.6 -2.8 1,4-alpha-glucan branching enzyme compare
CSW01_18630 -0.6 -3.0 6-phosphogluconolactonase compare
CSW01_17855 -0.6 -4.3 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_17745 -0.6 -1.6 diacylglycerol kinase compare
CSW01_08175 -0.6 -1.2 hypothetical protein compare
CSW01_11780 -0.6 -0.7 exodeoxyribonuclease V subunit beta compare
CSW01_09620 -0.6 -1.3 trigger factor compare
CSW01_10245 -0.6 -2.3 ABC transporter compare
CSW01_09250 -0.6 -0.6 crossover junction endodeoxyribonuclease RuvC compare
CSW01_15000 -0.6 -1.5 rfbP protein compare
CSW01_01965 -0.6 -0.8 glucose-6-phosphate isomerase compare
CSW01_12005 -0.6 -1.1 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_11415 -0.6 -1.6 phenolic acid decarboxylase compare
CSW01_15310 -0.6 -1.8 exoribonuclease R compare
CSW01_05125 -0.6 -1.4 ribonuclease T compare
CSW01_01515 -0.6 -1.3 type II 3-dehydroquinate dehydratase compare
CSW01_03330 -0.6 -1.3 transcription elongation factor GreA compare
CSW01_00465 -0.6 -1.6 twin-arginine translocase subunit TatB compare
CSW01_16395 -0.6 -1.2 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_05195 -0.5 -2.2 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_02450 -0.5 -3.5 pyrroline-5-carboxylate reductase compare
CSW01_16590 -0.5 -0.9 N-acetyltransferase compare
CSW01_15870 -0.5 -1.2 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_13670 -0.5 -1.3 DNA-directed RNA polymerase subunit omega compare
CSW01_09465 -0.5 -2.8 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_02890 -0.5 -3.3 aspartate kinase compare
CSW01_13620 -0.5 -4.1 aspartate ammonia-lyase compare
CSW01_05280 -0.5 -2.4 uridine kinase compare
CSW01_04650 -0.5 -0.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_17780 -0.5 -1.5 hypothetical protein compare
CSW01_06485 -0.5 -2.1 PTS lactose/cellobiose transporter subunit IIA compare
CSW01_04420 -0.5 -1.7 prepilin-type cleavage/methylation domain-containing protein compare
CSW01_11775 -0.5 -3.6 exodeoxyribonuclease V subunit alpha compare
CSW01_19395 -0.5 -0.9 histidine kinase compare
CSW01_06945 -0.5 -1.8 hypothetical protein compare
CSW01_00660 -0.5 -4.2 sensor domain-containing phosphodiesterase compare
CSW01_01385 -0.5 -2.5 DUF416 domain-containing protein compare
CSW01_17525 -0.5 -0.9 hypothetical protein compare
CSW01_11785 -0.5 -0.7 exonuclease V subunit gamma compare
CSW01_16040 -0.5 -2.1 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_07500 -0.5 -0.7 DUF2835 domain-containing protein compare
CSW01_07695 -0.5 -2.7 N-acetylglucosamine kinase compare
CSW01_12680 -0.5 -3.0 cytosol aminopeptidase compare
CSW01_11725 -0.5 -2.4 hypothetical protein compare
CSW01_15180 -0.5 -0.9 3-keto-L-gulonate-6-phosphate decarboxylase compare
CSW01_09955 -0.5 -2.6 L-asparaginase 1 compare
CSW01_17295 -0.5 -2.6 molybdopterin molybdotransferase compare
CSW01_10390 -0.5 -1.5 ferrous iron transport protein A compare
CSW01_00415 -0.5 -1.3 hypothetical protein compare
CSW01_13340 -0.5 -3.3 DNA-binding transcriptional regulator OxyR compare
CSW01_08125 -0.5 -1.3 glutaredoxin family protein compare
CSW01_16505 -0.5 -1.7 DUF645 domain-containing protein compare
CSW01_17370 -0.5 -1.6 hypothetical protein compare
CSW01_08625 -0.5 -2.1 chromosome partition protein MukE compare
CSW01_07755 -0.5 -2.0 hypothetical protein compare
CSW01_09625 -0.5 -1.1 hypothetical protein compare
CSW01_08240 -0.5 -1.1 ATP-binding protein compare
CSW01_07450 -0.5 -2.1 Lon protease family protein compare
CSW01_14965 -0.5 -1.7 hypothetical protein compare
CSW01_02265 -0.5 -2.3 arginine repressor compare
CSW01_07145 -0.4 -1.2 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_09045 -0.4 -2.5 hypothetical protein compare
CSW01_17090 -0.4 -3.0 SPOR domain-containing protein compare
CSW01_01045 -0.4 -3.5 DNA helicase RecQ compare
CSW01_09315 -0.4 -1.6 exodeoxyribonuclease III compare
CSW01_11760 -0.4 -1.7 DUF2850 domain-containing protein compare
CSW01_19095 -0.4 -2.1 DUF445 domain-containing protein compare
CSW01_10130 -0.4 -1.9 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
CSW01_02085 -0.4 -2.6 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_04870 -0.4 -1.0 ribosome silencing factor compare
CSW01_04315 -0.4 -2.4 TCP pilus virulence regulatory protein compare
CSW01_16945 -0.4 -1.8 DUF1097 domain-containing protein compare
CSW01_00015 -0.4 -0.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_07965 -0.4 -2.1 LysR family transcriptional regulator compare
CSW01_13675 -0.4 -2.0 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_14165 -0.4 -2.5 fucose 4-O-acetylase compare
CSW01_12365 -0.4 -1.1 inorganic phosphate transporter compare
CSW01_07920 -0.4 -1.2 lipid A modification system glycine carrier protein AlmF compare
CSW01_19610 -0.4 -1.6 biliverdin-producing heme oxygenase compare
CSW01_10565 -0.4 -1.8 hypothetical protein compare
CSW01_08705 -0.4 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_10260 -0.4 -1.3 thiol:disulfide interchange protein DsbE compare
CSW01_17665 -0.4 -1.2 hypothetical protein compare
CSW01_15115 -0.4 -2.2 iron(III) ABC transporter permease compare
CSW01_08540 -0.4 -2.3 NAD(P)-dependent oxidoreductase compare
CSW01_14780 -0.4 -1.0 cation:proton antiporter compare
CSW01_16785 -0.4 -1.6 hypothetical protein compare
CSW01_06305 -0.4 -2.6 methyl-accepting chemotaxis protein compare
CSW01_14815 -0.4 -1.2 hypothetical protein compare
CSW01_10835 -0.4 -1.9 hypothetical protein compare
CSW01_05230 -0.4 -1.5 molybdopterin synthase catalytic subunit compare
CSW01_00955 -0.4 -3.2 hypothetical protein compare
CSW01_10355 -0.4 -1.5 phosphohistidine phosphatase SixA compare
CSW01_16255 -0.4 -1.6 hypothetical protein compare
CSW01_16195 -0.4 -0.6 DUF645 domain-containing protein compare
CSW01_08710 -0.4 -1.3 hypothetical protein compare
CSW01_04320 -0.4 -2.8 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_16325 -0.4 -0.7 hypothetical protein compare
CSW01_17455 -0.4 -2.0 hypothetical protein compare
CSW01_03190 -0.4 -2.4 hypothetical protein compare
CSW01_16285 -0.4 -1.0 acetyltransferase compare
CSW01_08320 -0.4 -2.1 EamA/RhaT family transporter compare
CSW01_06565 -0.4 -2.7 L-serine ammonia-lyase compare
CSW01_03420 -0.4 -1.9 MarR family transcriptional regulator compare
CSW01_10545 -0.4 -1.7 hypothetical protein compare
CSW01_05795 -0.4 -1.4 cold-shock protein CspD compare
CSW01_17495 -0.4 -2.0 glycerol-3-phosphate dehydrogenase compare
CSW01_01845 -0.4 -2.3 protease modulator HflK compare
CSW01_00195 -0.4 -1.3 hypothetical protein compare
CSW01_14495 -0.4 -1.3 NUDIX hydrolase compare
CSW01_05375 -0.4 -1.8 recombination protein RecR compare
CSW01_12240 -0.4 -2.8 single-stranded-DNA-specific exonuclease RecJ compare
CSW01_10460 -0.4 -1.9 Nif3-like dinuclear metal center hexameric protein compare
CSW01_01110 -0.4 -2.5 YicC family protein compare
CSW01_06495 -0.4 -1.8 chitooligosaccharide deacetylase compare
CSW01_17325 -0.4 -1.8 transaldolase compare
CSW01_19600 -0.4 -1.7 hypothetical protein compare
CSW01_02570 -0.4 -1.9 hypothetical protein compare
CSW01_18090 -0.4 -2.2 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
CSW01_07565 -0.4 -1.9 3-deoxy-7-phosphoheptulonate synthase compare
CSW01_17030 -0.4 -1.4 competence protein ComFB compare
CSW01_14550 -0.4 -2.2 type VI secretion system contractile sheath small subunit compare
CSW01_11940 -0.4 -1.5 DUF3545 domain-containing protein compare
CSW01_02790 -0.4 -0.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
CSW01_17215 -0.4 -1.3 multidrug transporter compare
CSW01_08665 -0.4 -1.0 DNA transformation protein compare
CSW01_08395 -0.4 -2.0 cardiolipin synthase compare
CSW01_06010 -0.4 -1.4 DUF3392 domain-containing protein compare
CSW01_18060 -0.4 -1.3 allophanate hydrolase compare
CSW01_07215 -0.4 -1.1 cytochrome-c oxidase, cbb3-type subunit III compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_aerobic experiments

For lb_aerobic LB across organisms