Experiment set5IT073 for Methanococcus maripaludis S2

Compare to:

Formate McCas no stress control 2

200 most important genes:

  gene name fitness t score description  
MMP_RS09055 -5.4 -0.8 CAP domain-containing protein compare
MMP_RS00130 -5.3 -0.8 nickel-responsive transcriptional regulator NikR compare
MMP_RS07860 -4.1 -0.6 hypothetical protein compare
MMP_RS06700 -4.1 -10.2 hypothetical protein compare
MMP_RS07755 -3.9 -0.8 DUF555 domain-containing protein compare
MMP_RS06400 -3.9 -1.4 4Fe-4S binding protein compare
MMP_RS00300 -3.9 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS09020 -3.7 -1.3 hypothetical protein compare
MMP_RS04685 -3.6 -2.6 DUF126 domain-containing protein compare
MMP_RS03600 -3.4 -1.6 triose-phosphate isomerase compare
MMP_RS03025 -3.2 -4.3 molybdenum cofactor guanylyltransferase compare
MMP_RS00945 -3.1 -0.8 PadR family transcriptional regulator compare
MMP_RS06155 -3.0 -1.8 DUF4186 domain-containing protein compare
MMP_RS03315 -2.9 -1.1 ferrous iron transport protein A compare
MMP_RS02190 -2.9 -2.0 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS08300 -2.8 -1.0 metal-sulfur cluster assembly factor compare
MMP_RS08715 -2.8 -1.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01525 -2.7 -1.2 nucleoside-diphosphate kinase compare
MMP_RS04890 -2.7 -0.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06680 -2.6 -8.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08820 -2.6 -4.6 hypothetical protein compare
MMP_RS03205 -2.6 -0.8 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02280 -2.5 -0.7 DUF211 domain-containing protein compare
MMP_RS06345 -2.5 -6.8 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS03400 -2.5 -1.9 archease compare
MMP_RS06685 -2.3 -7.4 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS00895 -2.3 -2.8 hypothetical protein compare
MMP_RS06020 -2.3 -2.8 archaeoflavoprotein AfpA compare
MMP_RS07385 -2.3 -1.9 protein translocase SEC61 complex subunit gamma compare
MMP_RS05515 -2.3 -3.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS08790 -2.3 -1.3 translation initiation factor IF-2 subunit alpha compare
MMP_RS01175 -2.3 -1.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05675 -2.3 -1.8 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS06315 -2.2 -0.7 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08370 -2.2 -0.5 cation:proton antiporter subunit C compare
MMP_RS02340 -2.2 -1.3 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06760 -2.1 -2.3 hypothetical protein compare
MMP_RS02010 -2.1 -6.2 PHP domain-containing protein compare
MMP_RS04585 -2.1 -6.8 AIR synthase related protein compare
MMP_RS01005 -2.1 -0.9 riboflavin synthase compare
MMP_RS07635 -2.0 -4.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03385 -2.0 -0.7 cation diffusion facilitator family transporter compare
MMP_RS01020 -2.0 -0.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS08720 -2.0 -1.0 4Fe-4S binding protein compare
MMP_RS01500 -1.9 -1.2 CBS domain-containing protein compare
MMP_RS00335 -1.9 -1.6 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS06355 -1.9 -1.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07445 -1.9 -4.4 helix-turn-helix domain-containing protein compare
MMP_RS05555 -1.9 -1.0 DUF4040 domain-containing protein compare
MMP_RS06715 -1.8 -7.9 cache domain-containing protein compare
MMP_RS02235 -1.8 -6.8 CBS domain-containing protein compare
MMP_RS08745 -1.8 -3.7 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01795 -1.8 -1.0 methanogenesis marker 6 protein compare
MMP_RS06720 -1.7 -3.7 response regulator transcription factor compare
MMP_RS01610 -1.7 -1.6 hypothetical protein compare
MMP_RS07005 -1.7 -0.4 4Fe-4S binding protein compare
MMP_RS01250 -1.6 -1.8 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS05875 -1.6 -2.5 hydroxyethylthiazole kinase compare
MMP_RS05955 -1.6 -1.0 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS00115 -1.5 -6.1 radical SAM protein compare
MMP_RS06705 -1.5 -3.4 formate/nitrite transporter family protein compare
MMP_RS03580 -1.5 -1.6 signal recognition particle-docking protein FtsY compare
MMP_RS06350 -1.4 -2.7 HesA/MoeB/ThiF family protein compare
MMP_RS06475 -1.4 -2.2 FAD-dependent oxidoreductase compare
MMP_RS00685 -1.4 -2.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS03015 -1.4 -3.3 GTP 3' 8-cyclase MoaA compare
MMP_RS01570 -1.4 -0.8 hypothetical protein compare
MMP_RS03785 -1.4 -1.7 cupin domain-containing protein compare
MMP_RS07575 -1.4 -1.6 RNA ligase partner protein compare
MMP_RS07525 -1.3 -4.0 4Fe-4S binding protein compare
MMP_RS02195 -1.3 -1.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS05910 -1.3 -1.4 cell division ATPase MinD compare
MMP_RS01265 -1.3 -1.4 hypothetical protein compare
MMP_RS01545 -1.3 -0.4 CBS domain-containing protein compare
MMP_RS07680 -1.3 -1.7 DUF366 family protein compare
MMP_RS08940 -1.2 -0.6 MetS family NSS transporter small subunit compare
MMP_RS07815 -1.2 -0.7 DUF2120 domain-containing protein compare
MMP_RS01220 -1.2 -4.0 hypothetical protein compare
MMP_RS02815 -1.2 -1.0 hypothetical protein compare
MMP_RS00695 -1.2 -0.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS03775 -1.2 -1.6 4Fe-4S dicluster domain-containing protein compare
MMP_RS03640 -1.1 -1.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03350 -1.1 -1.6 winged helix-turn-helix domain-containing protein compare
MMP_RS00570 -1.1 -0.9 protein-L-isoaspartate O-methyltransferase compare
MMP_RS00060 -1.1 -1.0 3-dehydroquinate synthase II compare
MMP_RS03875 -1.1 -1.4 hypothetical protein compare
MMP_RS03910 -1.1 -1.0 hypothetical protein compare
MMP_RS04615 -1.0 -1.1 PDGLE domain-containing protein compare
MMP_RS00725 -1.0 -2.6 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS04780 -1.0 -1.5 ribonuclease P compare
MMP_RS05245 -1.0 -2.7 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS07835 -1.0 -2.0 TldD/PmbA family protein compare
MMP_RS06865 -1.0 -1.1 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06860 -1.0 -0.9 4Fe-4S binding protein compare
MMP_RS05540 -1.0 -2.3 hypothetical protein compare
MMP_RS00110 -1.0 -1.3 hypothetical protein compare
MMP_RS03685 -1.0 -2.5 Mrp/NBP35 family ATP-binding protein compare
MMP_RS03585 -1.0 -1.0 Hsp20/alpha crystallin family protein compare
MMP_RS00705 -1.0 -0.6 hypothetical protein compare
MMP_RS01755 -0.9 -0.5 DUF2097 domain-containing protein compare
MMP_RS07555 -0.9 -0.3 monovalent cation/H+ antiporter subunit E compare
MMP_RS00305 -0.9 -0.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS03245 -0.9 -1.2 DNA repair and recombination protein RadB compare
MMP_RS08210 -0.9 -1.0 phosphatidylglycerophosphatase A compare
MMP_RS00315 -0.9 -2.1 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS02610 -0.9 -1.2 DUF2162 domain-containing protein compare
MMP_RS06270 -0.9 -2.1 TIGR00300 family protein compare
MMP_RS01685 -0.9 -1.2 indolepyruvate oxidoreductase subunit beta compare
MMP_RS06120 -0.9 -0.8 UPF0147 family protein compare
MMP_RS05765 -0.9 -1.9 M42 family metallopeptidase compare
MMP_RS07700 -0.9 -2.7 DUF1188 domain-containing protein compare
MMP_RS07730 -0.9 -0.9 pyruvate synthase subunit beta compare
MMP_RS06295 -0.9 -2.4 methanogenesis marker 14 protein compare
MMP_RS02135 -0.9 -1.5 DUF5612 domain-containing protein compare
MMP_RS03435 -0.9 -0.6 ketol-acid reductoisomerase compare
MMP_RS02800 -0.9 -1.8 nucleotidyltransferase domain-containing protein compare
MMP_RS02165 -0.9 -2.5 tRNA-dihydrouridine synthase compare
MMP_RS04125 -0.9 -2.2 TetR/AcrR family transcriptional regulator compare
MMP_RS06625 -0.9 -0.8 DNA primase compare
MMP_RS08320 -0.9 -1.9 molybdopterin molybdotransferase MoeA compare
MMP_RS01030 -0.8 -1.5 MTAP family purine nucleoside phosphorylase compare
MMP_RS05315 -0.8 -0.8 hypothetical protein compare
MMP_RS02675 -0.8 -1.1 hypothetical protein compare
MMP_RS03090 -0.8 -1.8 cation:proton antiporter compare
MMP_RS07580 -0.8 -1.1 DUF356 domain-containing protein compare
MMP_RS01675 -0.8 -0.6 hypothetical protein compare
MMP_RS02900 -0.8 -0.2 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06930 -0.8 -3.3 MBL fold metallo-hydrolase compare
MMP_RS06925 -0.8 -0.9 ribonuclease VapC4 compare
MMP_RS05920 -0.8 -0.3 50S ribosomal protein L37e compare
MMP_RS02110 -0.8 -0.7 hypothetical protein compare
MMP_RS02885 -0.8 -3.8 molybdopterin biosynthesis protein compare
MMP_RS05510 -0.8 -2.0 Rrf2 family transcriptional regulator compare
MMP_RS04985 -0.8 -1.7 DUF2180 family protein compare
MMP_RS08705 -0.8 -1.2 sulfopyruvate decarboxylase subunit beta compare
MMP_RS00830 -0.8 -0.8 purine phosphoribosyltransferase family protein compare
MMP_RS03095 -0.8 -2.0 diphthine synthase compare
MMP_RS04870 -0.8 -1.2 TIGR02253 family HAD-type hydrolase compare
MMP_RS07845 -0.8 -0.6 LL-diaminopimelate aminotransferase compare
MMP_RS05815 -0.8 -0.7 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08635 -0.8 -0.6 UbiA family prenyltransferase compare
MMP_RS03470 -0.7 -2.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06745 -0.7 -0.7 DUF2119 domain-containing protein compare
MMP_RS01830 -0.7 -0.6 tRNA-Val compare
MMP_RS04740 -0.7 -0.8 DUF473 domain-containing protein compare
MMP_RS04775 -0.7 -1.1 adenosylhomocysteinase compare
MMP_RS02455 -0.7 -1.8 hypothetical protein compare
MMP_RS06285 -0.7 -0.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS05835 -0.7 -0.3 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS08075 -0.7 -1.9 DUF749 domain-containing protein compare
MMP_RS01780 -0.7 -1.5 TrmJ/YjtD family RNA methyltransferase compare
MMP_RS08645 -0.7 -2.1 UPF0179 family protein compare
MMP_RS06515 -0.7 -0.7 UPF0489 family protein compare
MMP_RS05825 -0.7 -0.9 peptidyl-prolyl cis-trans isomerase compare
MMP_RS05095 -0.7 -1.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS05660 -0.7 -1.4 phosphate ABC transporter substrate-binding protein compare
MMP_RS06910 -0.7 -2.0 RlmF-related methyltransferase compare
MMP_RS01725 -0.7 -1.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS02385 -0.7 -2.0 ATP-binding protein compare
MMP_RS01110 -0.7 -0.7 FmdE family protein compare
MMP_RS00515 -0.7 -0.3 DUF655 domain-containing protein compare
MMP_RS01365 -0.7 -0.8 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS04635 -0.7 -1.7 GNAT family N-acetyltransferase compare
MMP_RS02240 -0.7 -1.1 methanogenesis marker 7 protein compare
MMP_RS04420 -0.7 -1.9 LysE family translocator compare
MMP_RS03990 -0.7 -1.5 recombinase family protein compare
MMP_RS05430 -0.7 -1.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS06935 -0.7 -1.5 protease complex subunit PrcB family protein compare
MMP_RS01225 -0.7 -1.4 DUF5379 domain-containing protein compare
MMP_RS03555 -0.7 -1.7 transcriptional regulator compare
MMP_RS08105 -0.7 -1.7 6-carboxyhexanoate--CoA ligase compare
MMP_RS03155 -0.7 -1.7 precorrin-6A reductase compare
MMP_RS05830 -0.7 -1.2 peptidyl-prolyl cis-trans isomerase compare
MMP_RS08235 -0.7 -1.7 hypothetical protein compare
MMP_RS02245 -0.6 -0.7 hypothetical protein compare
MMP_RS08650 -0.6 -1.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS05265 -0.6 -0.7 2-isopropylmalate synthase compare
MMP_RS00290 -0.6 -1.1 hypothetical protein compare
MMP_RS00105 -0.6 -1.8 hypothetical protein compare
MMP_RS08070 -0.6 -1.3 DUF2096 domain-containing protein compare
MMP_RS05980 -0.6 -2.1 ferritin compare
MMP_RS01540 -0.6 -0.8 DUF504 domain-containing protein compare
MMP_RS00620 -0.6 -1.8 4Fe-4S binding protein compare
MMP_RS06140 -0.6 -1.5 radical SAM protein compare
MMP_RS05820 -0.6 -1.4 RNA-binding transcriptional accessory protein compare
MMP_RS08760 -0.6 -1.0 hypothetical protein compare
MMP_RS01605 -0.6 -0.9 hypothetical protein compare
MMP_RS04025 -0.6 -2.2 ATPase AAA compare
MMP_RS00650 -0.6 -1.4 ABC transporter ATP-binding protein compare
MMP_RS06555 -0.6 -0.9 cupin domain-containing protein compare
MMP_RS05415 -0.6 -1.3 DUF22 domain-containing protein compare
MMP_RS02985 -0.6 -0.6 hypothetical protein compare
MMP_RS08330 -0.6 -1.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS02170 -0.6 -0.8 CBS domain-containing protein compare
MMP_RS02930 -0.6 -0.9 class I SAM-dependent methyltransferase compare
MMP_RS01865 -0.6 -0.4 GPR1/FUN34/YaaH family transporter compare
MMP_RS04520 -0.6 -0.5 nucleoside deaminase compare
MMP_RS08460 -0.6 -0.7 proteasome-activating nucleotidase compare
MMP_RS06885 -0.6 -0.6 50S ribosome-binding GTPase compare
MMP_RS01475 -0.6 -1.6 phosphosulfolactate synthase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in stress experiments