Experiment set5IT073 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with 8-Hydroxy-nitroquinoline 0.2 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS10285 +1.8 5.3 membrane protein compare
BBR_RS12375 +1.4 2.5 pantetheine-phosphate adenylyltransferase compare
BBR_RS19760 +1.3 2.8 polysaccharide ABC transporter ATPase compare
BBR_RS11470 +1.3 1.8 6-phosphogluconolactonase compare
BBR_RS19800 +1.3 11.7 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS13030 +1.3 2.1 cell division ATP-binding protein FtsE compare
BBR_RS15915 +1.2 1.9 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS19270 +1.1 1.8 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS18575 +1.1 4.9 hypothetical protein compare
BBR_RS19795 +1.1 10.0 hypothetical protein compare
BBR_RS14400 +1.1 9.4 acetyltransferase compare
BBR_RS15695 +1.0 5.3 membrane channel protein compare
BBR_RS12370 +1.0 1.8 cell division protein compare
BBR_RS19645 +0.9 5.5 RNA degradosome polyphosphate kinase compare
BBR_RS16985 +0.8 3.4 transcriptional repressor LexA compare
BBR_RS17455 +0.8 5.7 DNA-binding response regulator compare
BBR_RS10720 +0.8 7.2 PDZ domain-containing protein compare
BBR_RS13215 +0.8 2.2 hypothetical protein compare
BBR_RS20780 +0.7 2.5 hypothetical protein compare
BBR_RS13735 +0.7 1.6 Lon protease compare
BBR_RS13750 +0.7 1.9 DivIVA domain-containing protein compare
BBR_RS16175 +0.6 2.3 DNA integration/recombination/inversion protein compare
BBR_RS16975 +0.6 2.9 transcriptional repressor NrdR compare
BBR_RS20430 +0.6 1.2 hypothetical protein compare
BBR_RS12900 +0.6 1.6 DeoR/GlpR transcriptional regulator compare
BBR_RS16020 +0.6 1.7 hypothetical protein compare
BBR_RS14870 +0.6 2.1 histidine phosphatase family protein compare
BBR_RS19355 +0.6 1.1 tRNA-Gly compare
BBR_RS13455 +0.6 1.6 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS21170 +0.6 4.1 membrane protein insertion efficiency factor YidD compare
BBR_RS18735 +0.6 3.5 hypothetical protein compare
BBR_RS18645 +0.5 4.1 DNA-binding response regulator compare
BBR_RS15845 +0.5 0.7 hypothetical protein compare
BBR_RS20775 +0.5 1.2 DUF4230 domain-containing protein compare
BBR_RS20785 +0.5 1.9 PadR family transcriptional regulator compare
BBR_RS15860 +0.5 0.8 DUF2316 domain-containing protein compare
BBR_RS15100 +0.5 4.5 murein L,D-transpeptidase compare
BBR_RS18770 +0.5 4.4 hypothetical protein compare
BBR_RS15385 +0.5 1.6 hypothetical protein compare
BBR_RS13450 +0.5 1.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS19390 +0.5 1.0 hypothetical protein compare
BBR_RS20980 +0.5 1.2 hypothetical protein compare
BBR_RS16135 +0.5 1.3 peptide deformylase compare
BBR_RS12910 +0.4 4.2 galactokinase compare
BBR_RS14700 +0.4 1.6 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS20920 +0.4 1.9 hypothetical protein compare
BBR_RS15320 +0.4 1.7 hypothetical protein compare
BBR_RS14330 +0.4 0.8 glycogen debranching enzyme GlgX compare
BBR_RS20545 +0.4 2.6 hypothetical protein compare
BBR_RS16940 +0.4 1.5 hypothetical protein compare
BBR_RS12925 +0.4 1.7 hypothetical protein compare
BBR_RS12500 +0.4 0.5 sugar ABC transporter permease compare
BBR_RS15015 +0.4 1.9 cytidine deaminase compare
BBR_RS11970 +0.4 0.7 Phage transcriptional regulator compare
BBR_RS20635 +0.4 1.7 hypothetical protein compare
BBR_RS14610 +0.4 1.0 DNA-binding response regulator compare
BBR_RS13420 +0.4 1.4 DUF4230 domain-containing protein compare
BBR_RS13255 +0.4 2.0 hypothetical protein compare
BBR_RS20760 +0.4 1.0 hypothetical protein compare
BBR_RS20750 +0.4 0.9 GntR family transcriptional regulator compare
BBR_RS20870 +0.4 1.2 hypothetical protein compare
BBR_RS14380 +0.4 3.0 phosphate acetyltransferase compare
BBR_RS15785 +0.4 0.8 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS20925 +0.4 0.9 amino acid permease compare
BBR_RS19440 +0.4 3.2 polysaccharide deacetylase family protein compare
BBR_RS18495 +0.4 2.7 ROK family protein compare
BBR_RS17045 +0.4 2.1 imidazoleglycerol-phosphate dehydratase compare
BBR_RS15990 +0.4 2.2 DNA-binding response regulator compare
BBR_RS14985 +0.4 0.7 ATP-dependent DNA helicase PcrA compare
BBR_RS19260 +0.3 3.1 hypothetical protein compare
BBR_RS19105 +0.3 2.2 FmdB family transcriptional regulator compare
BBR_RS15440 +0.3 1.2 orotidine-5'-phosphate decarboxylase compare
BBR_RS10660 +0.3 3.0 esterase compare
BBR_RS15435 +0.3 1.1 dihydroorotase compare
BBR_RS20090 +0.3 2.5 DUF4235 domain-containing protein compare
BBR_RS13980 +0.3 1.8 HD domain-containing protein compare
BBR_RS11590 +0.3 0.4 30S ribosomal protein S18 compare
BBR_RS15665 +0.3 1.1 preprotein translocase subunit YajC compare
BBR_RS16580 +0.3 2.0 EamA/RhaT family transporter compare
BBR_RS15660 +0.3 1.3 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS10640 +0.3 2.8 alpha/beta hydrolase compare
BBR_RS19095 +0.3 2.7 magnesium transporter compare
BBR_RS14470 +0.3 1.7 hypothetical protein compare
BBR_RS18525 +0.3 1.1 hypothetical protein compare
BBR_RS21120 +0.3 2.4 hypothetical protein compare
BBR_RS20200 +0.3 3.0 alpha-galactosidase compare
BBR_RS17035 +0.3 1.9 imidazole glycerol phosphate synthase subunit HisH compare
BBR_RS14350 +0.3 1.1 hypothetical protein compare
BBR_RS17590 +0.3 1.5 PTS sugar transporter subunit IIA compare
BBR_RS17865 +0.3 1.8 MarR family transcriptional regulator compare
BBR_RS13110 +0.3 1.9 type III pantothenate kinase compare
BBR_RS20105 +0.3 2.8 YhgE/Pip domain-containing protein compare
BBR_RS11715 +0.3 2.6 N-acetyltransferase compare
BBR_RS16405 +0.3 1.7 peptidylprolyl isomerase compare
BBR_RS12600 +0.3 1.5 serine acetyltransferase compare
BBR_RS12555 +0.3 1.6 protein-tyrosine-phosphatase compare
BBR_RS12125 +0.3 1.8 transposase compare
BBR_RS20865 +0.3 0.9 glycogen phosphorylase compare
BBR_RS14425 +0.3 1.6 histidine phosphatase family protein compare
BBR_RS14575 +0.3 1.1 YraN family protein compare
BBR_RS14480 +0.3 1.8 pyruvate formate-lyase 1-activating enzyme compare
BBR_RS14485 +0.3 1.6 DUF3000 domain-containing protein compare
BBR_RS13525 +0.3 1.2 CrcB family protein compare
BBR_RS20100 +0.3 2.6 YhgE/Pip domain-containing protein compare
BBR_RS21030 +0.3 1.4 hypothetical protein compare
BBR_RS18315 +0.3 1.5 hypothetical protein compare
BBR_RS17120 +0.3 1.6 DUF4186 domain-containing protein compare
BBR_RS21025 +0.3 1.5 hypothetical protein compare
BBR_RS18695 +0.3 1.7 PRD domain-containing protein compare
BBR_RS13320 +0.3 1.6 ABC transporter ATP-binding protein compare
BBR_RS18165 +0.3 1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
BBR_RS18045 +0.3 0.5 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS15965 +0.3 1.7 transporter, drug/metabolite exporter family compare
BBR_RS17300 +0.3 1.5 membrane protein compare
BBR_RS16760 +0.3 2.0 glycerate kinase compare
BBR_RS13655 +0.3 1.7 hypothetical protein compare
BBR_RS20675 +0.3 1.7 hypothetical protein compare
BBR_RS19055 +0.3 0.6 ferredoxin family protein compare
BBR_RS14945 +0.3 1.5 peptidase E compare
BBR_RS16505 +0.3 1.5 hypothetical protein compare
BBR_RS17050 +0.3 2.0 histidinol-phosphate transaminase compare
BBR_RS18985 +0.3 2.5 4-alpha-glucanotransferase compare
BBR_RS15550 +0.3 0.9 L-lactate dehydrogenase compare
BBR_RS17080 +0.3 1.7 hypothetical protein compare
BBR_RS16220 +0.3 0.3 DNA cytosine methyltransferase compare
BBR_RS13015 +0.3 1.7 peptide deformylase compare
BBR_RS18655 +0.3 2.1 aminoglycoside phosphotransferase family protein compare
BBR_RS19370 +0.3 1.0 type I polyketide synthase compare
BBR_RS16440 +0.2 0.8 SGNH/GDSL hydrolase family protein compare
BBR_RS21050 +0.2 1.2 hypothetical protein compare
BBR_RS14160 +0.2 0.8 peptidylprolyl isomerase compare
BBR_RS16075 +0.2 1.3 hypothetical protein compare
BBR_RS16670 +0.2 1.1 hypothetical protein compare
BBR_RS17025 +0.2 1.9 DUF2252 domain-containing protein compare
BBR_RS14685 +0.2 1.0 YccF domain-containing protein compare
BBR_RS20440 +0.2 1.3 NUDIX hydrolase compare
BBR_RS12515 +0.2 1.8 LacI family transcriptional regulator compare
BBR_RS15260 +0.2 1.6 glutamate synthase subunit beta compare
BBR_RS15305 +0.2 0.9 hypothetical protein compare
BBR_RS10910 +0.2 1.9 molecular chaperone DnaJ compare
BBR_RS11720 +0.2 1.0 DUF2469 domain-containing protein compare
BBR_RS16845 +0.2 0.4 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS18100 +0.2 1.7 lincomycin resistance protein LmrB compare
BBR_RS17685 +0.2 1.0 hypothetical protein compare
BBR_RS14460 +0.2 1.6 amidohydrolase compare
BBR_RS11240 +0.2 0.9 GtrA family protein compare
BBR_RS18660 +0.2 2.0 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase compare
BBR_RS14605 +0.2 2.0 ABC transporter permease compare
BBR_RS12260 +0.2 1.6 LemA family protein compare
BBR_RS18800 +0.2 1.4 50S ribosomal protein L17 compare
BBR_RS15525 +0.2 1.4 RNase adapter RapZ compare
BBR_RS13535 +0.2 1.3 MerR family DNA-binding transcriptional regulator compare
BBR_RS18710 +0.2 1.7 hypothetical protein compare
BBR_RS17415 +0.2 0.6 hypothetical protein compare
BBR_RS20885 +0.2 0.3 hypothetical protein compare
BBR_RS15960 +0.2 1.1 hypothetical protein compare
BBR_RS13220 +0.2 1.1 hypothetical protein compare
BBR_RS13800 +0.2 0.8 hypothetical protein compare
BBR_RS18640 +0.2 1.4 PspC domain-containing protein compare
BBR_RS12450 +0.2 0.8 signal peptidase I compare
BBR_RS16870 +0.2 1.3 ROK family protein compare
BBR_RS13575 +0.2 1.2 sugar O-acetyltransferase compare
BBR_RS12165 +0.2 1.8 ATP-binding protein compare
BBR_RS16540 +0.2 1.0 XRE family transcriptional regulator compare
BBR_RS12055 +0.2 1.7 thioredoxin compare
BBR_RS16885 +0.2 1.7 carbohydrate kinase compare
BBR_RS14225 +0.2 1.1 ComF family protein compare
BBR_RS16560 +0.2 1.2 hypothetical protein compare
BBR_RS16820 +0.2 0.7 RNA polymerase sigma factor RpoE compare
BBR_RS13365 +0.2 1.6 aldehyde dehydrogenase family protein compare
BBR_RS20065 +0.2 1.7 carbohydrate ABC transporter permease compare
BBR_RS12580 +0.2 1.1 transposase compare
BBR_RS15670 +0.2 0.7 adenine phosphoribosyltransferase compare
BBR_RS15220 +0.2 1.2 trimeric intracellular cation channel family protein compare
BBR_RS13305 +0.2 1.0 transcriptional repressor compare
BBR_RS20130 +0.2 1.9 threonine ammonia-lyase compare
BBR_RS17275 +0.2 1.5 nitroreductase compare
BBR_RS16710 +0.2 1.1 hypothetical protein compare
BBR_RS16145 +0.2 1.0 hypothetical protein compare
BBR_RS20660 +0.2 1.2 hypothetical protein compare
BBR_RS21005 +0.2 0.8 hypothetical protein compare
BBR_RS12535 +0.2 1.5 divalent metal cation transporter MntH compare
BBR_RS12405 +0.2 1.3 ribonuclease PH compare
BBR_RS20070 +0.2 1.6 sugar ABC transporter permease compare
BBR_RS16695 +0.2 1.1 PadR family transcriptional regulator compare
BBR_RS20560 +0.2 1.2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS17065 +0.2 1.2 aldo/keto reductase compare
BBR_RS14550 +0.2 1.2 hypothetical protein compare
BBR_RS20155 +0.2 1.8 sugar ABC transporter permease compare
BBR_RS17640 +0.2 0.4 DNA-directed RNA polymerase subunit omega compare
BBR_RS16840 +0.2 1.6 chromosome segregation protein SMC compare
BBR_RS20420 +0.2 1.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS18445 +0.2 1.0 hypothetical protein compare
BBR_RS14040 +0.2 0.9 GNAT family N-acetyltransferase compare
BBR_RS13195 +0.2 1.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS compare
BBR_RS13325 +0.2 0.8 hypothetical protein compare
BBR_RS17700 +0.2 1.1 CRISPR-associated protein Cas4 compare
BBR_RS10505 +0.2 1.7 DUF4956 domain-containing protein compare
BBR_RS15880 +0.2 0.7 hypothetical protein compare
BBR_RS18560 +0.2 1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress 8-hydroxy-nitroquinoline across organisms