Experiment set5IT072 for Rhodanobacter denitrificans FW104-10B01

Compare to:

D-Raffinose pentahydrate 20 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS17505 -3.6 -4.3 preprotein translocase subunit SecG compare
LRK54_RS04260 -3.3 -6.0 pyrroline-5-carboxylate reductase compare
LRK54_RS12710 -3.2 -11.1 DNA starvation/stationary phase protection protein compare
LRK54_RS04585 -3.0 -7.6 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS02395 -2.9 -5.0 acetylornithine deacetylase compare
LRK54_RS12625 -2.9 -15.7 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS10315 -2.9 -11.6 ketol-acid reductoisomerase compare
LRK54_RS10335 -2.8 -13.0 3-isopropylmalate dehydratase large subunit compare
LRK54_RS01340 -2.8 -15.3 amidophosphoribosyltransferase compare
LRK54_RS10320 -2.8 -6.4 dihydroxy-acid dehydratase compare
LRK54_RS10325 -2.8 -9.9 3-isopropylmalate dehydrogenase compare
LRK54_RS11375 -2.8 -9.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS16940 -2.7 -6.6 RNA polymerase sigma factor RpoE compare
LRK54_RS10165 -2.7 -16.3 phosphoribosylamine--glycine ligase compare
LRK54_RS11565 -2.7 -4.5 anthranilate phosphoribosyltransferase compare
LRK54_RS10345 -2.7 -8.3 2-isopropylmalate synthase compare
LRK54_RS10310 -2.7 -10.6 biosynthetic-type acetolactate synthase large subunit compare
LRK54_RS03185 -2.6 -7.3 phosphoglycerate dehydrogenase compare
LRK54_RS02385 -2.6 -9.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
LRK54_RS02185 -2.6 -4.9 exodeoxyribonuclease V subunit alpha compare
LRK54_RS10350 -2.6 -10.3 hypothetical protein compare
LRK54_RS04625 -2.6 -13.5 serine hydroxymethyltransferase compare
LRK54_RS02380 -2.5 -7.5 argininosuccinate lyase compare
LRK54_RS00305 -2.5 -12.1 asparagine synthase B compare
LRK54_RS05670 -2.5 -5.5 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS05535 -2.5 -6.5 glycosyltransferase family 2 protein compare
LRK54_RS12975 -2.4 -3.7 hemolysin family protein compare
LRK54_RS12855 -2.4 -7.2 PTS fructose transporter subunit IIA compare
LRK54_RS05785 -2.4 -8.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS05980 -2.4 -2.3 ATP-binding protein compare
LRK54_RS04710 -2.4 -4.2 glycosyltransferase family 2 protein compare
LRK54_RS11570 -2.4 -5.2 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS05990 -2.4 -10.2 hypothetical protein compare
LRK54_RS06840 -2.4 -18.7 DNA polymerase I compare
LRK54_RS12460 -2.3 -3.8 hypothetical protein compare
LRK54_RS05740 -2.3 -7.1 phosphoglycerate kinase compare
LRK54_RS00400 -2.3 -12.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK54_RS02415 -2.3 -11.8 N-acetylornithine carbamoyltransferase compare
LRK54_RS11290 -2.3 -2.2 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS05630 -2.3 -8.0 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS04720 -2.3 -8.3 phosphoribosylformylglycinamidine synthase compare
LRK54_RS18055 -2.3 -4.1 glycosyltransferase family 4 protein compare
LRK54_RS04140 -2.3 -7.4 inositol-phosphate phosphatase compare
LRK54_RS10660 -2.3 -2.2 DUF4156 domain-containing protein compare
LRK54_RS06785 -2.3 -2.2 protein-disulfide reductase DsbD compare
LRK54_RS03290 -2.2 -3.0 RIP metalloprotease RseP compare
LRK54_RS10965 -2.2 -14.8 FAD-dependent oxidoreductase compare
LRK54_RS05655 -2.2 -3.9 ABC transporter permease compare
LRK54_RS12945 -2.2 -8.9 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS05540 -2.2 -4.4 glycosyltransferase family 2 protein compare
LRK54_RS13760 -2.2 -9.3 trypsin-like peptidase domain-containing protein compare
LRK54_RS10960 -2.2 -18.0 glutamate synthase large subunit compare
LRK54_RS10330 -2.2 -2.9 3-isopropylmalate dehydratase small subunit compare
LRK54_RS10340 -2.2 -11.2 branched-chain amino acid transaminase compare
LRK54_RS09280 -2.2 -20.7 TonB-dependent receptor compare
LRK54_RS00670 -2.2 -6.7 OmpA family protein compare
LRK54_RS04765 -2.2 -11.0 LysR substrate-binding domain-containing protein compare
LRK54_RS11170 -2.2 -5.1 NADP-dependent malic enzyme compare
LRK54_RS11560 -2.1 -4.5 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS15035 -2.1 -7.7 M48 family metalloprotease compare
LRK54_RS06415 -2.1 -1.4 hypothetical protein compare
LRK54_RS02175 -2.1 -8.9 exodeoxyribonuclease V subunit gamma compare
LRK54_RS09805 -2.1 -6.5 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS05650 -2.1 -6.8 ABC transporter ATP-binding protein compare
LRK54_RS16945 -2.1 -4.2 sigma-E factor negative regulatory protein compare
LRK54_RS08625 -2.1 -16.3 exodeoxyribonuclease III compare
LRK54_RS00440 -2.1 -8.3 high frequency lysogenization protein HflD compare
LRK54_RS05635 -2.0 -10.6 dehydrogenase compare
LRK54_RS02390 -2.0 -8.3 acetylglutamate kinase compare
LRK54_RS16615 -2.0 -2.7 phosphopyruvate hydratase compare
LRK54_RS12860 -2.0 -5.7 RNase adapter RapZ compare
LRK54_RS02855 -2.0 -5.9 type I restriction-modification system subunit M compare
LRK54_RS03125 -2.0 -2.3 preprotein translocase subunit YajC compare
LRK54_RS06425 -1.9 -2.6 ribonucleoside-diphosphate reductase compare
LRK54_RS02400 -1.9 -7.7 argininosuccinate synthase compare
LRK54_RS12865 -1.9 -9.0 HPr(Ser) kinase/phosphatase compare
LRK54_RS05985 -1.9 -2.6 response regulator transcription factor compare
LRK54_RS12030 -1.9 -9.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK54_RS16660 -1.9 -9.9 VTT domain-containing protein compare
LRK54_RS15765 -1.9 -2.0 hypothetical protein compare
LRK54_RS16730 -1.8 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS13710 -1.8 -5.7 CBS domain-containing protein compare
LRK54_RS05415 -1.8 -8.8 TetR/AcrR family transcriptional regulator compare
LRK54_RS05640 -1.8 -9.4 GDP-mannose 4,6-dehydratase compare
LRK54_RS02370 -1.8 -10.6 glutamate-5-semialdehyde dehydrogenase compare
LRK54_RS05000 -1.8 -15.5 beta-phosphoglucomutase compare
LRK54_RS04630 -1.8 -2.6 energy-dependent translational throttle protein EttA compare
LRK54_RS01685 -1.8 -10.7 tryptophan synthase subunit beta compare
LRK54_RS12075 -1.8 -13.5 phosphoenolpyruvate carboxylase compare
LRK54_RS17400 -1.8 -2.3 hypothetical protein compare
LRK54_RS06470 -1.8 -9.6 carboxy terminal-processing peptidase compare
LRK54_RS03675 -1.7 -2.0 redox-regulated ATPase YchF compare
LRK54_RS05500 -1.7 -2.1 hypothetical protein compare
LRK54_RS18060 -1.7 -5.0 polysaccharide biosynthesis protein compare
LRK54_RS14590 -1.7 -7.5 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS02570 -1.7 -11.3 SDR family oxidoreductase compare
LRK54_RS16735 -1.7 -11.9 endopeptidase La compare
LRK54_RS11415 -1.7 -11.5 anthranilate synthase component I compare
LRK54_RS11975 -1.7 -6.4 SLC13 family permease compare
LRK54_RS17160 -1.7 -2.0 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS05200 -1.7 -2.9 hypothetical protein compare
LRK54_RS01280 -1.7 -2.2 MBL fold metallo-hydrolase compare
LRK54_RS16755 -1.7 -5.5 SurA N-terminal domain-containing protein compare
LRK54_RS08320 -1.6 -12.8 phenylalanine 4-monooxygenase compare
LRK54_RS04350 -1.6 -6.0 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS01680 -1.6 -6.6 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS05665 -1.6 -5.1 dTDP-glucose 4,6-dehydratase compare
LRK54_RS02180 -1.6 -6.6 UvrD-helicase domain-containing protein compare
LRK54_RS04955 -1.6 -12.3 ATP-dependent chaperone ClpB compare
LRK54_RS01520 -1.6 -11.6 amino acid permease compare
LRK54_RS05010 -1.6 -12.5 MFS transporter conserved
LRK54_RS09345 -1.6 -1.7 ATP-binding protein compare
LRK54_RS08680 -1.5 -8.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK54_RS00085 -1.5 -2.0 tetratricopeptide repeat protein compare
LRK54_RS05300 -1.5 -2.9 homoserine dehydrogenase compare
LRK54_RS01575 -1.5 -7.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LRK54_RS02440 -1.5 -2.8 RNA polymerase-binding protein DksA compare
LRK54_RS16955 -1.5 -9.8 translation elongation factor 4 compare
LRK54_RS18050 -1.5 -10.6 lipopolysaccharide assembly protein LapB compare
LRK54_RS05765 -1.5 -7.9 fructose-bisphosphate aldolase class I compare
LRK54_RS10305 -1.5 -2.7 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
LRK54_RS08930 -1.5 -4.2 XRE family transcriptional regulator compare
LRK54_RS14670 -1.4 -2.2 NrsF family protein compare
LRK54_RS01720 -1.4 -1.1 hydroxyacid dehydrogenase compare
LRK54_RS05645 -1.4 -10.6 glycosyltransferase compare
LRK54_RS11745 -1.4 -7.2 ribonuclease PH compare
LRK54_RS14980 -1.4 -6.8 recombinase RecA compare
LRK54_RS12200 -1.4 -5.7 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS17270 -1.4 -3.6 DNA translocase FtsK compare
LRK54_RS05610 -1.4 -6.1 GtrA family protein compare
LRK54_RS09200 -1.3 -8.9 MFS transporter compare
LRK54_RS02375 -1.3 -5.0 glutamate 5-kinase compare
LRK54_RS00080 -1.3 -7.4 helix-turn-helix domain-containing protein compare
LRK54_RS05575 -1.3 -8.2 class I SAM-dependent methyltransferase compare
LRK54_RS10270 -1.3 -1.6 ComF family protein compare
LRK54_RS06795 -1.3 -4.9 type II 3-dehydroquinate dehydratase compare
LRK54_RS03110 -1.2 -7.4 nucleotidyltransferase family protein compare
LRK54_RS03405 -1.2 -6.9 ribonuclease G compare
LRK54_RS16935 -1.2 -8.8 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS12875 -1.2 -5.9 RNA polymerase factor sigma-54 compare
LRK54_RS15740 -1.2 -1.9 asparaginase domain-containing protein compare
LRK54_RS10465 -1.2 -9.7 M61 family metallopeptidase compare
LRK54_RS01590 -1.2 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS02895 -1.2 -7.7 rhomboid family intramembrane serine protease compare
LRK54_RS07830 -1.2 -10.0 TonB-dependent vitamin B12 receptor compare
LRK54_RS08595 -1.2 -6.5 shikimate dehydrogenase compare
LRK54_RS04965 -1.2 -5.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK54_RS16655 -1.2 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS01595 -1.1 -3.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK54_RS00615 -1.1 -6.0 protease modulator HflC compare
LRK54_RS12670 -1.1 -6.7 glycosyltransferase compare
LRK54_RS13540 -1.1 -1.6 flagellar biosynthetic protein FliO compare
LRK54_RS00620 -1.1 -7.2 FtsH protease activity modulator HflK compare
LRK54_RS16930 -1.1 -6.6 hypothetical protein compare
LRK54_RS11800 -1.1 -8.1 RidA family protein compare
LRK54_RS02325 -1.1 -2.3 SDR family oxidoreductase compare
LRK54_RS16810 -1.1 -1.7 hypothetical protein compare
LRK54_RS11670 -1.1 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
LRK54_RS04305 -1.1 -2.7 shikimate kinase compare
LRK54_RS13700 -1.1 -6.8 magnesium and cobalt transport protein CorA compare
LRK54_RS06755 -1.1 -9.1 LTA synthase family protein compare
LRK54_RS13885 -1.1 -2.3 DUF2249 domain-containing protein compare
LRK54_RS07020 -1.1 -1.4 ABC transporter permease compare
LRK54_RS01015 -1.1 -9.1 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK54_RS17900 -1.1 -1.9 4a-hydroxytetrahydrobiopterin dehydratase compare
LRK54_RS12330 -1.0 -3.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK54_RS00905 -1.0 -4.4 cysteine synthase A compare
LRK54_RS01600 -1.0 -6.4 histidinol-phosphate transaminase compare
LRK54_RS00635 -1.0 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS05005 -1.0 -9.0 TonB-dependent receptor conserved
LRK54_RS10005 -1.0 -2.2 general secretion pathway protein GspN compare
LRK54_RS11230 -1.0 -1.2 universal stress protein compare
LRK54_RS03105 -1.0 -6.3 phosphotransferase compare
LRK54_RS00690 -1.0 -7.0 2-methylcitrate synthase compare
LRK54_RS04340 -1.0 -3.9 ribosomal protein S18-alanine N-acetyltransferase compare
LRK54_RS16160 -1.0 -1.0 DUF1674 domain-containing protein compare
LRK54_RS12335 -0.9 -6.0 hypothetical protein compare
LRK54_RS10855 -0.9 -2.3 protein-export chaperone SecB compare
LRK54_RS02115 -0.9 -5.7 homocysteine S-methyltransferase family protein compare
LRK54_RS14480 -0.9 -3.5 response regulator transcription factor compare
LRK54_RS07310 -0.9 -6.3 pteridine reductase compare
LRK54_RS12665 -0.9 -5.9 autotransporter assembly complex protein TamA compare
LRK54_RS06745 -0.9 -4.0 mitochondrial fission ELM1 family protein compare
LRK54_RS02120 -0.9 -6.6 methionine synthase compare
LRK54_RS10065 -0.9 -2.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS15170 -0.9 -5.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK54_RS04995 -0.9 -2.5 LacI family DNA-binding transcriptional regulator compare
LRK54_RS15970 -0.9 -1.6 DUF4190 domain-containing protein compare
LRK54_RS10845 -0.9 -4.7 50S ribosomal protein L33 compare
LRK54_RS00980 -0.9 -6.1 DnaJ domain-containing protein compare
LRK54_RS16155 -0.9 -0.7 folate-binding protein compare
LRK54_RS14775 -0.9 -4.7 cold-shock protein compare
LRK54_RS01605 -0.9 -6.4 histidinol dehydrogenase compare
LRK54_RS03895 -0.9 -6.7 lipopolysaccharide biosynthesis protein compare
LRK54_RS05970 -0.9 -3.6 hypothetical protein compare
LRK54_RS05305 -0.9 -5.8 cystathionine gamma-synthase compare
LRK54_RS05310 -0.9 -3.9 homoserine O-succinyltransferase compare
LRK54_RS01610 -0.9 -2.0 ATP phosphoribosyltransferase compare
LRK54_RS02975 -0.9 -5.4 alpha/beta fold hydrolase compare
LRK54_RS07980 -0.9 -1.7 nitrogen regulation protein NR(I) compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Raffinose pentahydrate in Rhodanobacter denitrificans FW104-10B01

For carbon source D-Raffinose pentahydrate across organisms