Experiment set5IT072 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3658 -3.6 -6.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5527 -3.2 -3.1 Cold shock protein CspC compare
Pf6N2E2_2088 -3.1 -2.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_5406 -3.0 -2.9 FIG00958224: hypothetical protein compare
Pf6N2E2_3661 -3.0 -3.6 hypothetical protein compare
Pf6N2E2_3659 -2.9 -5.5 Protein fixF compare
Pf6N2E2_4691 -2.9 -2.6 hypothetical protein compare
Pf6N2E2_2510 -2.7 -4.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3282 -2.6 -2.5 FIG005080: Possible exported protein compare
Pf6N2E2_3264 -2.6 -3.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2218 -2.6 -4.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3303 -2.6 -4.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5160 -2.5 -2.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2574 -2.4 -2.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_2219 -2.4 -2.7 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2217 -2.4 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5069 -2.4 -5.5 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3782 -2.3 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5316 -2.3 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3349 -2.2 -3.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1083 -2.2 -2.5 hypothetical protein compare
Pf6N2E2_1676 -2.2 -2.5 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_2513 -2.2 -3.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4187 -2.2 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2318 -2.2 -7.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2313 -2.2 -4.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3839 -2.1 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2480 -2.1 -2.0 FIG00957636: hypothetical protein compare
Pf6N2E2_2506 -2.1 -11.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5671 -2.1 -3.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_5508 -2.1 -2.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3842 -2.1 -3.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2507 -2.1 -5.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5727 -2.0 -5.0 FIG00955360: hypothetical protein compare
Pf6N2E2_4204 -2.0 -1.9 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5178 -2.0 -2.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5739 -2.0 -1.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3841 -1.9 -4.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3206 -1.9 -1.4 hypothetical protein compare
Pf6N2E2_613 -1.9 -1.9 lipoprotein, putative compare
Pf6N2E2_3252 -1.9 -6.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_1056 -1.8 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5150 -1.8 -5.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3373 -1.7 -1.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4416 -1.7 -2.5 Tyrosine recombinase XerC compare
Pf6N2E2_5339 -1.7 -5.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2508 -1.7 -3.6 hypothetical protein compare
Pf6N2E2_919 -1.7 -2.4 FIG00954373: hypothetical protein compare
Pf6N2E2_5536 -1.7 -1.9 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2127 -1.7 -3.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5338 -1.7 -5.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4159 -1.6 -3.4 Cytochrome c4 compare
Pf6N2E2_417 -1.6 -2.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_595 -1.6 -1.9 Arsenical resistance operon repressor compare
Pf6N2E2_4369 -1.6 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3835 -1.6 -3.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2527 -1.6 -3.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2274 -1.6 -4.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2967 -1.5 -1.4 Cold shock protein CspA compare
Pf6N2E2_734 -1.5 -2.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5006 -1.5 -5.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_719 -1.5 -2.4 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_3253 -1.5 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3062 -1.5 -3.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2317 -1.5 -3.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5068 -1.5 -6.8 putative Cytochrome bd2, subunit I compare
Pf6N2E2_6063 -1.5 -5.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_5337 -1.4 -3.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2503 -1.4 -2.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_4205 -1.4 -3.3 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_6057 -1.4 -2.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2080 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_2124 -1.4 -2.0 Mg(2+) transport ATPase protein C compare
Pf6N2E2_3534 -1.4 -2.2 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_4579 -1.4 -2.0 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2755 -1.4 -1.6 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5545 -1.3 -3.1 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_1718 -1.3 -2.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_2794 -1.3 -1.9 putative membrane protein compare
Pf6N2E2_3261 -1.3 -3.6 hypothetical protein compare
Pf6N2E2_1116 -1.3 -1.8 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_3251 -1.3 -5.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2284 -1.3 -2.1 Cell division inhibitor-related protein compare
Pf6N2E2_5430 -1.3 -5.8 Transglycosylase, Slt family compare
Pf6N2E2_3179 -1.3 -1.9 FIG021952: putative membrane protein compare
Pf6N2E2_2010 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_5242 -1.3 -1.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3325 -1.2 -2.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_170 -1.2 -1.8 lipoprotein, putative compare
Pf6N2E2_5523 -1.2 -2.2 Small-conductance mechanosensitive channel compare
Pf6N2E2_70 -1.2 -2.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4206 -1.2 -1.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1743 -1.2 -2.6 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_88 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_3505 -1.1 -1.5 Translation initiation factor SUI1-related protein compare
Pf6N2E2_746 -1.1 -1.6 FIG00958097: hypothetical protein compare
Pf6N2E2_64 -1.1 -2.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2474 -1.1 -5.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1040 -1.1 -1.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2311 -1.1 -4.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3199 -1.1 -3.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_1032 -1.1 -1.2 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3941 -1.1 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3610 -1.1 -2.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4059 -1.0 -1.0 DNA-binding protein HU-alpha compare
Pf6N2E2_204 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_1081 -1.0 -1.5 probable membrane protein YPO3302 compare
Pf6N2E2_4611 -1.0 -2.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3074 -1.0 -1.6 FIG00960973: hypothetical protein compare
Pf6N2E2_5775 -1.0 -2.1 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_178 -1.0 -1.1 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5780 -1.0 -5.1 Periplasmic protease compare
Pf6N2E2_2827 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_2180 -1.0 -1.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2746 -1.0 -3.8 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_1875 -1.0 -2.0 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_3940 -1.0 -4.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2277 -1.0 -1.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2384 -1.0 -2.7 CmpX compare
Pf6N2E2_1660 -1.0 -2.1 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_3607 -1.0 -4.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_1812 -0.9 -2.3 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_234 -0.9 -2.0 FIG00454312: hypothetical protein compare
Pf6N2E2_6064 -0.9 -2.8 2-methylaconitate isomerase compare
Pf6N2E2_2912 -0.9 -1.2 FIG00954094: hypothetical protein compare
Pf6N2E2_3192 -0.9 -2.9 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4418 -0.9 -0.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2320 -0.9 -1.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2472 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_1886 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_5950 -0.9 -2.1 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_384 -0.9 -2.2 Glycine cleavage system transcriptional activator compare
Pf6N2E2_84 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_5156 -0.9 -1.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5223 -0.9 -2.6 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_1935 -0.9 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2938 -0.9 -2.7 Outer membrane lipoprotein compare
Pf6N2E2_971 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_5499 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_4072 -0.9 -2.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2310 -0.9 -4.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_6058 -0.9 -2.9 FIG139976: hypothetical protein compare
Pf6N2E2_3908 -0.9 -3.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3834 -0.9 -3.2 Lipoprotein NlpD compare
Pf6N2E2_1095 -0.9 -1.5 Opine oxidase subunit C compare
Pf6N2E2_890 -0.8 -3.2 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) compare
Pf6N2E2_2126 -0.8 -3.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_4047 -0.8 -3.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3791 -0.8 -3.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_4365 -0.8 -3.5 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_1656 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_3557 -0.8 -2.0 Chaperone-modulator protein CbpM compare
Pf6N2E2_768 -0.8 -2.1 Fap amyloid fibril minor component compare
Pf6N2E2_2261 -0.8 -3.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_3711 -0.8 -3.6 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf6N2E2_5544 -0.8 -3.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3156 -0.8 -2.9 POSSIBLE MEMBRANE PROTEIN compare
Pf6N2E2_1173 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_5103 -0.8 -0.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2225 -0.8 -1.4 FIG00953489: hypothetical protein compare
Pf6N2E2_3229 -0.8 -1.9 Putative glutathione transporter, ATP-binding component compare
Pf6N2E2_4276 -0.8 -2.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4057 -0.8 -0.6 lipoprotein, putative compare
Pf6N2E2_5845 -0.8 -3.6 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2752 -0.8 -3.8 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_443 -0.8 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2071 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_1124 -0.8 -1.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2039 -0.8 -3.2 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_1015 -0.8 -2.0 Inositol transport system sugar-binding protein compare
Pf6N2E2_2788 -0.8 -1.2 Transcriptional regulator, AsnC family compare
Pf6N2E2_3320 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_2425 -0.8 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2552 -0.8 -3.3 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_888 -0.8 -2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5944 -0.8 -3.2 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_4987 -0.8 -0.8 MaoC-like domain protein compare
Pf6N2E2_4451 -0.8 -2.6 FIG139438: lipoprotein B compare
Pf6N2E2_3942 -0.8 -4.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3237 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_2753 -0.8 -1.4 HtrA protease/chaperone protein compare
Pf6N2E2_2825 -0.8 -2.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5567 -0.8 -1.7 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_1082 -0.8 -1.8 CopG protein compare
Pf6N2E2_4743 -0.8 -0.7 hypothetical protein compare
Pf6N2E2_1325 -0.8 -1.6 FIG00954773: hypothetical protein compare
Pf6N2E2_2870 -0.8 -1.9 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_1089 -0.8 -1.1 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_5986 -0.8 -1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2864 -0.8 -1.4 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4372 -0.8 -2.6 FIG00460773: hypothetical protein compare
Pf6N2E2_5623 -0.8 -1.9 YciL protein compare
Pf6N2E2_5219 -0.8 -3.6 FIG140336: TPR domain protein compare
Pf6N2E2_3521 -0.8 -3.8 Sensor histidine kinase/response regulator compare
Pf6N2E2_2340 -0.8 -2.0 Transcriptional regulator, GntR family compare
Pf6N2E2_1548 -0.8 -1.7 Lactoylglutathione lyase compare
Pf6N2E2_2264 -0.8 -2.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4916 -0.8 -1.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5974 -0.7 -2.4 Uncharacterized glutathione S-transferase-like protein compare
Pf6N2E2_4362 -0.7 -1.8 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments