Experiment set5IT071 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_17560 -4.5 -2.3 ROK family transcriptional regulator compare
IAI47_16390 -3.2 -0.9 tRNA-Leu compare
IAI47_12790 -3.2 -0.9 chromosome partition protein MukE compare
IAI47_07020 -3.2 -1.8 hypothetical protein compare
IAI47_08085 -3.2 -6.9 helix-turn-helix domain-containing protein compare
IAI47_05580 -3.1 -1.8 membrane protein YpdK compare
IAI47_05070 -3.0 -0.9 outer membrane protein assembly factor BamB compare
IAI47_13700 -3.0 -5.0 Tol-Pal system protein TolQ compare
IAI47_14075 -3.0 -3.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_18400 -3.0 -2.8 tyrosine recombinase XerC compare
IAI47_08445 -2.9 -1.5 Holliday junction branch migration protein RuvA compare
IAI47_00780 -2.9 -3.9 6-phosphofructokinase compare
IAI47_09040 -2.7 -2.4 NAD-dependent epimerase compare
IAI47_07165 -2.7 -1.8 exodeoxyribonuclease I compare
IAI47_13690 -2.7 -0.8 cell envelope integrity protein TolA compare
IAI47_13695 -2.7 -0.8 colicin uptake protein TolR compare
IAI47_16995 -2.7 -2.3 protein YrbN compare
IAI47_08705 -2.5 -12.7 carboxy terminal-processing peptidase compare
IAI47_11830 -2.5 -7.1 muramoyltetrapeptide carboxypeptidase compare
IAI47_00870 -2.5 -1.0 50S ribosomal protein L31 compare
IAI47_15605 -2.4 -2.0 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_00930 -2.4 -11.6 DNA-binding transcriptional regulator OxyR compare
IAI47_15485 -2.3 -1.6 molecular chaperone Skp compare
IAI47_04300 -2.2 -7.2 recombinase RecA compare
IAI47_09580 -2.2 -3.2 FNR family transcription factor compare
IAI47_12645 -2.1 -4.5 porin OmpA compare
IAI47_17020 -2.1 -3.4 30S ribosome-binding factor RbfA compare
IAI47_15635 -2.1 -2.3 RNA polymerase-binding protein DksA compare
IAI47_03375 -2.1 -9.1 peptide chain release factor 3 compare
IAI47_15595 -2.0 -2.1 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_17215 -2.0 -1.1 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_05155 -1.9 -11.5 polyphosphate kinase 1 compare
IAI47_06900 -1.9 -3.5 phosphatase PAP2 family protein compare
IAI47_18470 -1.9 -10.7 ECA oligosaccharide polymerase compare
IAI47_08700 -1.9 -5.5 RNA chaperone ProQ compare
IAI47_06320 -1.8 -6.5 phosphate acetyltransferase compare
IAI47_03820 -1.8 -3.8 site-specific tyrosine recombinase XerD compare
IAI47_01135 -1.8 -0.9 hypothetical protein compare
IAI47_11310 -1.8 -3.7 redox-regulated ATPase YchF compare
IAI47_00940 -1.8 -8.1 HTH-type transcriptional repressor FabR compare
IAI47_09055 -1.8 -9.8 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_18480 -1.8 -7.5 lipid III flippase WzxE compare
IAI47_12885 -1.8 -7.0 pyruvate formate lyase 1-activating protein compare
IAI47_07015 -1.7 -4.8 ABC transporter ATP-binding protein compare
IAI47_08010 -1.7 -6.4 flagella biosynthesis chaperone FliJ compare
IAI47_16420 -1.7 -9.4 LacI family DNA-binding transcriptional regulator compare
IAI47_07005 -1.7 -4.3 glycosyltransferase family 4 protein compare
IAI47_08450 -1.7 -3.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_05425 -1.7 -4.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_02090 -1.7 -3.6 elongation factor Tu compare
IAI47_10565 -1.7 -1.2 DUF4113 domain-containing protein compare
IAI47_17235 -1.7 -7.3 stringent starvation protein A compare
IAI47_09305 -1.7 -3.1 cyclic di-GMP phosphodiesterase compare
IAI47_12880 -1.7 -10.6 formate C-acetyltransferase compare
IAI47_14730 -1.7 -1.1 exodeoxyribonuclease VII small subunit compare
IAI47_00300 -1.7 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_07010 -1.6 -2.4 ABC transporter permease compare
IAI47_01875 -1.6 -2.3 hypothetical protein compare
IAI47_00430 -1.6 -9.9 DNA polymerase I compare
IAI47_18520 -1.6 -9.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_04425 -1.5 -6.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_12865 -1.5 -7.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_11540 -1.5 -2.8 type VI secretion system tip protein VgrG compare
IAI47_13950 -1.5 -1.1 PhoH family protein compare
IAI47_13720 -1.5 -3.8 cytochrome d ubiquinol oxidase subunit II compare
IAI47_00375 -1.5 -11.4 ribose operon transcriptional repressor RbsR compare
IAI47_19035 -1.5 -1.9 transcriptional regulator compare
IAI47_04835 -1.5 -6.6 ATP-dependent RNA helicase SrmB compare
IAI47_13885 -1.5 -1.8 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_00500 -1.4 -8.5 ATP-dependent DNA helicase RecG compare
IAI47_12930 -1.4 -3.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_12280 -1.4 -8.1 glucan biosynthesis protein G compare
IAI47_11515 -1.4 -1.7 hypothetical protein compare
IAI47_16085 -1.4 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_17005 -1.4 -4.9 polyribonucleotide nucleotidyltransferase compare
IAI47_21830 -1.4 -1.8 hypothetical protein compare
IAI47_13050 -1.3 -2.6 YbjN domain-containing protein compare
IAI47_18410 -1.3 -3.3 diaminopimelate epimerase compare
IAI47_15110 -1.3 -3.7 chromophore lyase compare
IAI47_06245 -1.3 -2.5 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_12275 -1.3 -9.4 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_03645 -1.3 -8.4 O-antigen ligase family protein compare
IAI47_04120 -1.3 -8.9 GTP diphosphokinase compare
IAI47_17910 -1.3 -3.1 chorismate lyase compare
IAI47_12170 -1.3 -5.4 flagellar basal body P-ring formation protein FlgA compare
IAI47_03640 -1.2 -7.7 glycosyltransferase compare
IAI47_06325 -1.2 -3.3 acetate kinase compare
IAI47_09235 -1.2 -1.1 type I DNA topoisomerase compare
IAI47_00675 -1.2 -8.9 glycosyltransferase family 9 protein compare
IAI47_03610 -1.2 -3.6 YqgE/AlgH family protein compare
IAI47_18055 -1.2 -3.4 DNA-binding protein HU-alpha compare
IAI47_18490 -1.2 -4.2 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_07030 -1.2 -4.8 HAD family hydrolase compare
IAI47_18145 -1.2 -1.5 elongation factor Tu compare
IAI47_12920 -1.2 -2.3 thioredoxin-disulfide reductase compare
IAI47_17965 -1.2 -6.5 glucose-6-phosphate isomerase compare
IAI47_10840 -1.2 -3.4 pyruvate kinase PykF compare
IAI47_05035 -1.2 -2.1 nucleoside-diphosphate kinase compare
IAI47_19890 -1.1 -2.0 hypothetical protein compare
IAI47_15155 -1.1 -2.3 DUF943 family protein compare
IAI47_12925 -1.1 -2.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_08440 -1.1 -1.2 crossover junction endodeoxyribonuclease RuvC compare
IAI47_03235 -1.1 -3.8 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_08145 -1.1 -7.5 flagellin FliC compare
IAI47_10545 -1.1 -2.6 hypothetical protein compare
IAI47_13725 -1.1 -3.2 cytochrome ubiquinol oxidase subunit I compare
IAI47_13475 -1.1 -2.6 molybdopterin synthase catalytic subunit MoaE compare
IAI47_13145 -1.1 -3.6 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_08135 -1.1 -5.0 flagellar export chaperone FliS compare
IAI47_00670 -1.1 -7.9 sugar glycosyltransferase compare
IAI47_12140 -1.0 -4.0 flagellar basal-body rod protein FlgG compare
IAI47_12470 -1.0 -6.9 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_07025 -1.0 -3.3 glycosyltransferase family 4 protein compare
IAI47_08140 -1.0 -5.9 flagellar filament capping protein FliD compare
IAI47_08305 -1.0 -3.3 chemotaxis protein CheW compare
IAI47_12175 -1.0 -1.7 anti-sigma-28 factor FlgM compare
IAI47_05195 -1.0 -1.1 DnaA inactivator Hda compare
IAI47_08340 -1.0 -2.9 protein phosphatase CheZ compare
IAI47_06680 -1.0 -2.3 LysR family transcriptional regulator compare
IAI47_04870 -1.0 -3.4 elongation factor 4 compare
IAI47_13890 -1.0 -4.0 ROK family transcriptional regulator compare
IAI47_21235 -1.0 -1.4 hypothetical protein compare
IAI47_07475 -1.0 -0.7 hypothetical protein compare
IAI47_12105 -1.0 -3.8 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI47_00925 -0.9 -1.6 hypothetical protein compare
IAI47_21035 -0.9 -1.9 TetR/AcrR family transcriptional regulator compare
IAI47_08300 -0.9 -5.1 chemotaxis protein CheA compare
IAI47_05325 -0.9 -1.9 DUF1471 domain-containing protein compare
IAI47_07000 -0.9 -4.6 UDP-glucose 4-epimerase GalE compare
IAI47_07885 -0.9 -0.7 tRNA-Asn compare
IAI47_17165 -0.9 -4.2 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_14555 -0.9 -2.3 hemolysin expression modulator Hha compare
IAI47_13195 -0.9 -4.0 DNA starvation/stationary phase protection protein Dps compare
IAI47_01940 -0.9 -2.1 DUF2559 family protein compare
IAI47_17255 -0.9 -1.3 DUF1043 family protein compare
IAI47_20705 -0.9 -0.8 sulfur carrier protein ThiS compare
IAI47_12180 -0.9 -3.7 flagellar export chaperone FlgN compare
IAI47_06510 -0.9 -4.8 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI47_04800 -0.9 -0.7 RnfH family protein compare
IAI47_03680 -0.9 -4.9 transketolase compare
IAI47_16080 -0.9 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_06240 -0.9 -3.2 aspartate-semialdehyde dehydrogenase compare
IAI47_03615 -0.8 -3.9 glutathione synthase compare
IAI47_01475 -0.8 -3.7 MurR/RpiR family transcriptional regulator compare
IAI47_15920 -0.8 -3.1 D-alanine--D-alanine ligase compare
IAI47_00505 -0.8 -3.4 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_11415 -0.8 -0.9 hypothetical protein compare
IAI47_12135 -0.8 -4.7 flagellar basal body L-ring protein FlgH compare
IAI47_04110 -0.8 -6.9 two-component sensor histidine kinase BarA compare
IAI47_10725 -0.8 -1.1 DUF1656 domain-containing protein compare
IAI47_06135 -0.8 -1.5 phosphohistidine phosphatase SixA compare
IAI47_06345 -0.8 -4.6 5'-deoxynucleotidase compare
IAI47_09720 -0.8 -4.1 TetR/AcrR family transcriptional regulator compare
IAI47_09750 -0.8 -3.3 ROK family transcriptional regulator compare
IAI47_08160 -0.8 -3.3 RNA polymerase sigma factor FliA compare
IAI47_12120 -0.8 -4.9 flagellar hook-associated protein FlgK compare
IAI47_01005 -0.8 -4.4 DUF413 domain-containing protein compare
IAI47_09320 -0.8 -4.0 exoribonuclease II compare
IAI47_03860 -0.8 -4.2 diaminopimelate decarboxylase compare
IAI47_16190 -0.8 -1.8 molybdopterin adenylyltransferase compare
IAI47_11475 -0.8 -0.7 hypothetical protein compare
IAI47_15305 -0.8 -2.1 allantoin racemase compare
IAI47_20600 -0.8 -0.9 hypothetical protein compare
IAI47_12570 -0.8 -0.6 tRNA-Ser compare
IAI47_17155 -0.8 -4.4 calcium/sodium antiporter compare
IAI47_16365 -0.8 -3.8 ribosomal protein S18-alanine N-acetyltransferase compare
IAI47_09440 -0.8 -4.2 transcriptional regulator TyrR compare
IAI47_11445 -0.8 -2.2 ankyrin repeat domain-containing protein compare
IAI47_13685 -0.8 -1.1 Tol-Pal system protein TolB compare
IAI47_05815 -0.8 -2.3 hypothetical protein compare
IAI47_08030 -0.8 -4.4 flagellar M-ring protein FliF compare
IAI47_07955 -0.8 -0.9 protein DsrB compare
IAI47_05850 -0.7 -2.0 NinF family protein compare
IAI47_13140 -0.7 -3.8 molybdopterin molybdotransferase MoeA compare
IAI47_13490 -0.7 -4.1 molybdenum cofactor biosynthesis protein B compare
IAI47_17120 -0.7 -1.2 BolA family iron metabolism protein IbaG compare
IAI47_12125 -0.7 -3.4 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_05050 -0.7 -2.7 cytoskeleton protein RodZ compare
IAI47_18705 -0.7 -4.5 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_15970 -0.7 -1.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_08335 -0.7 -2.5 chemotaxis response regulator CheY compare
IAI47_09675 -0.7 -1.1 YoaK family small membrane protein compare
IAI47_16940 -0.7 -2.3 type 1 glutamine amidotransferase compare
IAI47_18980 -0.7 -2.2 helix-turn-helix domain-containing protein compare
IAI47_10520 -0.7 -1.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_00075 -0.7 -2.5 YbaK/prolyl-tRNA synthetase associated domain-containing protein compare
IAI47_08025 -0.7 -2.7 flagellar motor switch protein FliG compare
IAI47_13900 -0.7 -4.8 asparagine synthase B compare
IAI47_05200 -0.7 -2.7 arsenate reductase (glutaredoxin) compare
IAI47_09210 -0.7 -2.7 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_16610 -0.7 -1.5 hypothetical protein compare
IAI47_20850 -0.7 -1.5 TetR/AcrR family transcriptional regulator compare
IAI47_20290 -0.7 -2.0 XapX domain-containing protein compare
IAI47_21155 -0.7 -1.3 IS6 family transposase compare
IAI47_05305 -0.7 -2.0 ArsC family reductase compare
IAI47_11450 -0.7 -2.1 ankyrin repeat domain-containing protein compare
IAI47_16095 -0.7 -1.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_01625 -0.7 -2.2 GNAT family N-acetyltransferase compare
IAI47_13740 -0.7 -0.6 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_16255 -0.7 -2.5 trp operon repressor compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms