Experiment set5IT070 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Hans 100x vitamins

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_156 -4.2 -2.8 Carbon storage regulator compare
Pf6N2E2_5014 -4.1 -2.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5242 -3.4 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3665 -3.1 -1.6 serine/threonine protein kinase compare
Pf6N2E2_5069 -2.9 -5.6 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3842 -2.8 -4.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3303 -2.8 -4.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5527 -2.7 -3.1 Cold shock protein CspC compare
Pf6N2E2_5705 -2.6 -3.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2313 -2.5 -3.4 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3612 -2.4 -2.3 HflK protein compare
Pf6N2E2_2277 -2.4 -2.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3841 -2.3 -5.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3461 -2.3 -2.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5068 -2.2 -9.9 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3782 -2.2 -3.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5671 -2.1 -3.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3661 -2.1 -4.3 hypothetical protein compare
Pf6N2E2_4803 -2.1 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2317 -2.1 -4.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3908 -2.1 -5.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5339 -2.0 -5.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4206 -1.8 -2.0 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2755 -1.8 -2.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_178 -1.8 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3534 -1.8 -3.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5338 -1.8 -6.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3264 -1.7 -2.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4077 -1.7 -1.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5508 -1.7 -2.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3940 -1.6 -6.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3658 -1.6 -5.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2674 -1.6 -1.6 FIG00953856: hypothetical protein compare
Pf6N2E2_3253 -1.6 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3252 -1.6 -4.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2480 -1.6 -1.8 FIG00957636: hypothetical protein compare
Pf6N2E2_4369 -1.6 -2.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4908 -1.6 -6.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3839 -1.6 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4743 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_2217 -1.5 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_613 -1.5 -1.6 lipoprotein, putative compare
Pf6N2E2_5156 -1.5 -1.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3171 -1.5 -1.5 hypothetical protein compare
Pf6N2E2_384 -1.5 -3.0 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5155 -1.5 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3610 -1.5 -4.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2318 -1.5 -5.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2311 -1.5 -5.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2127 -1.5 -3.5 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3611 -1.4 -1.3 HflC protein compare
Pf6N2E2_1162 -1.4 -2.0 Transmembrane amino acid efflux protein compare
Pf6N2E2_3088 -1.4 -2.3 hypothetical protein compare
Pf6N2E2_1499 -1.4 -2.8 ABC transporter amino acid-binding protein compare
Pf6N2E2_5499 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_160 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_3251 -1.4 -6.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3260 -1.4 -3.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2574 -1.4 -1.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_5430 -1.3 -6.0 Transglycosylase, Slt family compare
Pf6N2E2_4352 -1.3 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2310 -1.3 -6.6 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2312 -1.3 -2.1 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2402 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_350 -1.3 -2.1 Gfa-like protein compare
Pf6N2E2_3659 -1.3 -3.8 Protein fixF compare
Pf6N2E2_4889 -1.3 -4.3 Putative transport protein compare
Pf6N2E2_1506 -1.3 -2.3 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_74 -1.2 -2.6 DedD protein compare
Pf6N2E2_1667 -1.2 -2.1 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2012 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_1089 -1.2 -1.8 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_2286 -1.2 -1.7 FIG00953287: hypothetical protein compare
Pf6N2E2_2126 -1.2 -4.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_288 -1.2 -1.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4454 -1.2 -3.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_6035 -1.2 -2.2 alpha/beta hydrolase fold compare
Pf6N2E2_4584 -1.2 -2.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3257 -1.1 -2.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5406 -1.1 -1.7 FIG00958224: hypothetical protein compare
Pf6N2E2_919 -1.1 -1.6 FIG00954373: hypothetical protein compare
Pf6N2E2_1305 -1.1 -2.5 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_5730 -1.1 -2.7 FIG00954480: hypothetical protein compare
Pf6N2E2_2274 -1.1 -3.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_1797 -1.1 -1.7 Transcriptional regulator compare
Pf6N2E2_1099 -1.1 -1.8 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_4205 -1.1 -2.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2527 -1.1 -3.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3206 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_4279 -1.1 -5.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5111 -1.1 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2218 -1.1 -2.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2320 -1.1 -1.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5319 -1.1 -4.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_1968 -1.1 -2.2 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_3763 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_3591 -1.1 -2.8 NUDIX hydrolase compare
Pf6N2E2_5494 -1.0 -3.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5669 -1.0 -3.4 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_625 -1.0 -2.8 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_1043 -1.0 -2.9 Transcriptional regulator, IclR family compare
Pf6N2E2_3778 -1.0 -2.1 FIG00954300: hypothetical protein compare
Pf6N2E2_4276 -1.0 -3.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5172 -1.0 -2.6 FOG: TPR repeat compare
Pf6N2E2_4187 -1.0 -2.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2114 -1.0 -2.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2073 -1.0 -4.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1424 -1.0 -1.1 transcriptional regulator, TetR family compare
Pf6N2E2_3460 -1.0 -1.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3161 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_63 -1.0 -2.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_417 -1.0 -2.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_5316 -1.0 -1.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_6022 -1.0 -1.6 StbE replicon stabilization toxin compare
Pf6N2E2_1896 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_4159 -1.0 -1.9 Cytochrome c4 compare
Pf6N2E2_2970 -1.0 -2.4 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_3240 -1.0 -1.2 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_133 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_2514 -1.0 -3.0 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3634 -1.0 -1.7 Transporter compare
Pf6N2E2_3351 -1.0 -2.3 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4479 -1.0 -1.4 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_2384 -1.0 -2.8 CmpX compare
Pf6N2E2_5320 -1.0 -4.4 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3656 -0.9 -3.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_1472 -0.9 -3.1 Cytochrome b561 compare
Pf6N2E2_4601 -0.9 -1.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3729 -0.9 -3.0 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare
Pf6N2E2_704 -0.9 -2.3 Cytochrome c551/c552 compare
Pf6N2E2_285 -0.9 -3.0 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_2869 -0.9 -1.3 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_855 -0.9 -2.0 Transcriptional regulator, IclR family compare
Pf6N2E2_2261 -0.9 -3.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_3237 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_5938 -0.9 -3.0 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_620 -0.9 -3.9 BatD compare
Pf6N2E2_766 -0.9 -2.4 Fap protein with C39 domain compare
Pf6N2E2_4733 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_490 -0.9 -2.0 PhaK-like protein compare
Pf6N2E2_623 -0.9 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_1034 -0.9 -1.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2424 -0.9 -2.8 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_5337 -0.9 -2.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5331 -0.9 -3.0 ATPase, AFG1 family compare
Pf6N2E2_3328 -0.9 -1.6 transcriptional regulator compare
Pf6N2E2_1323 -0.9 -2.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3529 -0.9 -1.3 Toxin A compare
Pf6N2E2_2139 -0.9 -2.0 Paraquat-inducible protein A compare
Pf6N2E2_6047 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_2822 -0.9 -4.2 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_478 -0.9 -2.1 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_3477 -0.9 -1.6 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3783 -0.8 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3834 -0.8 -3.7 Lipoprotein NlpD compare
Pf6N2E2_1248 -0.8 -1.5 MutT/nudix family protein compare
Pf6N2E2_888 -0.8 -2.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_420 -0.8 -0.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4372 -0.8 -2.9 FIG00460773: hypothetical protein compare
Pf6N2E2_2180 -0.8 -1.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5476 -0.8 -2.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_1617 -0.8 -0.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_1808 -0.8 -2.5 Transcriptional regulator compare
Pf6N2E2_3009 -0.8 -2.0 Phage tail tube protein compare
Pf6N2E2_4678 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_5820 -0.8 -1.8 FIG00957914: hypothetical protein compare
Pf6N2E2_1807 -0.8 -3.5 hypothetical protein compare
Pf6N2E2_4362 -0.8 -2.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4204 -0.8 -1.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3901 -0.8 -2.2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_1213 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_3096 -0.8 -1.0 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5758 -0.8 -1.4 FIG00957314: hypothetical protein compare
Pf6N2E2_2788 -0.8 -1.8 Transcriptional regulator, AsnC family compare
Pf6N2E2_1696 -0.8 -1.4 Alkanesulfonates-binding protein compare
Pf6N2E2_3607 -0.8 -4.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2399 -0.8 -3.7 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_2508 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_5241 -0.8 -1.6 Aminopeptidase N compare
Pf6N2E2_3713 -0.8 -1.5 Acyl carrier protein compare
Pf6N2E2_421 -0.8 -2.0 Methyl-accepting chemotaxis protein compare
Pf6N2E2_2860 -0.8 -2.7 Putative threonine efflux protein compare
Pf6N2E2_4708 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_1082 -0.8 -1.8 CopG protein compare
Pf6N2E2_4710 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_3941 -0.8 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1869 -0.8 -2.7 hypothetical protein compare
Pf6N2E2_5727 -0.8 -2.8 FIG00955360: hypothetical protein compare
Pf6N2E2_21 -0.8 -2.3 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf6N2E2_2193 -0.8 -2.4 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_1032 -0.8 -0.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_4052 -0.8 -0.8 FIG00955481: hypothetical protein compare
Pf6N2E2_6057 -0.8 -1.3 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3806 -0.8 -2.5 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Pf6N2E2_1626 -0.8 -3.2 Putative ATP-binding component of a transport system compare
Pf6N2E2_5646 -0.8 -1.1 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_3786 -0.8 -1.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_4153 -0.8 -0.8 Sensory box histidine kinase compare
Pf6N2E2_4773 -0.8 -0.7 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_3791 -0.7 -3.6 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Hans 100x vitamins across organisms