Experiment set5IT070 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_09040 -4.9 -2.6 NAD-dependent epimerase compare
IAI47_08085 -4.4 -4.2 helix-turn-helix domain-containing protein compare
IAI47_17560 -4.3 -2.3 ROK family transcriptional regulator compare
IAI47_13885 -3.5 -2.0 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_18400 -3.3 -2.3 tyrosine recombinase XerC compare
IAI47_16390 -3.2 -1.0 tRNA-Leu compare
IAI47_12790 -3.1 -0.9 chromosome partition protein MukE compare
IAI47_13685 -3.0 -2.3 Tol-Pal system protein TolB compare
IAI47_05070 -3.0 -0.9 outer membrane protein assembly factor BamB compare
IAI47_19690 -2.9 -1.2 hypothetical protein compare
IAI47_08705 -2.9 -11.8 carboxy terminal-processing peptidase compare
IAI47_13700 -2.9 -4.7 Tol-Pal system protein TolQ compare
IAI47_14325 -2.8 -2.6 ribosome-associated protein YbcJ compare
IAI47_18715 -2.8 -1.8 YibL family ribosome-associated protein compare
IAI47_12645 -2.7 -5.1 porin OmpA compare
IAI47_03820 -2.7 -3.6 site-specific tyrosine recombinase XerD compare
IAI47_17215 -2.7 -1.1 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_13690 -2.6 -0.8 cell envelope integrity protein TolA compare
IAI47_13695 -2.6 -0.8 colicin uptake protein TolR compare
IAI47_18480 -2.6 -9.8 lipid III flippase WzxE compare
IAI47_09305 -2.5 -2.4 cyclic di-GMP phosphodiesterase compare
IAI47_10320 -2.5 -1.0 Rrf2 family transcriptional regulator compare
IAI47_09580 -2.5 -3.7 FNR family transcription factor compare
IAI47_00930 -2.5 -10.4 DNA-binding transcriptional regulator OxyR compare
IAI47_11760 -2.4 -1.6 TonB-dependent siderophore receptor compare
IAI47_15595 -2.4 -2.4 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_21880 -2.3 -1.0 ParA family protein compare
IAI47_18830 -2.3 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_07010 -2.2 -3.0 ABC transporter permease compare
IAI47_08450 -2.1 -3.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_00300 -2.1 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_02090 -2.0 -3.6 elongation factor Tu compare
IAI47_09055 -2.0 -10.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_16420 -2.0 -10.5 LacI family DNA-binding transcriptional regulator compare
IAI47_00430 -1.9 -11.8 DNA polymerase I compare
IAI47_21035 -1.9 -3.0 TetR/AcrR family transcriptional regulator compare
IAI47_00780 -1.9 -4.1 6-phosphofructokinase compare
IAI47_18145 -1.9 -2.2 elongation factor Tu compare
IAI47_03375 -1.9 -8.6 peptide chain release factor 3 compare
IAI47_12570 -1.8 -1.1 tRNA-Ser compare
IAI47_12880 -1.8 -12.1 formate C-acetyltransferase compare
IAI47_05155 -1.8 -11.5 polyphosphate kinase 1 compare
IAI47_07015 -1.8 -4.6 ABC transporter ATP-binding protein compare
IAI47_05325 -1.8 -2.5 DUF1471 domain-containing protein compare
IAI47_04120 -1.8 -11.2 GTP diphosphokinase compare
IAI47_05195 -1.8 -1.9 DnaA inactivator Hda compare
IAI47_04335 -1.8 -2.5 tRNA-Arg compare
IAI47_15110 -1.8 -4.2 chromophore lyase compare
IAI47_10840 -1.7 -4.1 pyruvate kinase PykF compare
IAI47_04300 -1.7 -6.5 recombinase RecA compare
IAI47_11830 -1.7 -4.6 muramoyltetrapeptide carboxypeptidase compare
IAI47_05425 -1.7 -4.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_10775 -1.7 -5.1 ribonuclease T compare
IAI47_03570 -1.7 -2.3 YggL family protein compare
IAI47_04870 -1.7 -5.6 elongation factor 4 compare
IAI47_06245 -1.7 -3.2 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_07020 -1.6 -1.3 hypothetical protein compare
IAI47_17020 -1.6 -3.2 30S ribosome-binding factor RbfA compare
IAI47_15970 -1.6 -2.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_10835 -1.6 -0.8 tRNA-Val compare
IAI47_11310 -1.6 -3.1 redox-regulated ATPase YchF compare
IAI47_13840 -1.6 -3.3 replication initiation negative regulator SeqA compare
IAI47_17035 -1.6 -2.3 ribosome maturation factor RimP compare
IAI47_09360 -1.6 -1.2 peptide ABC transporter ATP-binding protein SapF compare
IAI47_11360 -1.5 -2.6 hypothetical protein compare
IAI47_13485 -1.5 -5.2 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_15605 -1.5 -1.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_10520 -1.5 -2.5 pyridoxamine 5'-phosphate oxidase compare
IAI47_11375 -1.5 -1.5 hypothetical protein compare
IAI47_06325 -1.5 -5.2 acetate kinase compare
IAI47_02345 -1.4 -1.0 5S ribosomal RNA compare
IAI47_08305 -1.4 -5.6 chemotaxis protein CheW compare
IAI47_18470 -1.4 -8.0 ECA oligosaccharide polymerase compare
IAI47_02380 -1.4 -1.9 DNA-binding transcriptional regulator Fis compare
IAI47_00940 -1.4 -5.8 HTH-type transcriptional repressor FabR compare
IAI47_18265 -1.4 -1.3 Sec-independent protein translocase subunit TatB compare
IAI47_12470 -1.4 -7.5 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_07550 -1.4 -0.9 tRNA-Asn compare
IAI47_00375 -1.4 -10.7 ribose operon transcriptional repressor RbsR compare
IAI47_17235 -1.4 -6.1 stringent starvation protein A compare
IAI47_07025 -1.4 -4.1 glycosyltransferase family 4 protein compare
IAI47_04835 -1.4 -5.8 ATP-dependent RNA helicase SrmB compare
IAI47_18520 -1.4 -8.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_03680 -1.4 -7.6 transketolase compare
IAI47_21335 -1.4 -3.2 RepB family plasmid replication initiator protein compare
IAI47_00655 -1.4 -2.6 glycosyltransferase family 4 protein compare
IAI47_13475 -1.4 -2.3 molybdopterin synthase catalytic subunit MoaE compare
IAI47_10825 -1.4 -1.2 tRNA-Val compare
IAI47_07165 -1.4 -1.7 exodeoxyribonuclease I compare
IAI47_14955 -1.4 -2.1 phosphate starvation-inducible protein compare
IAI47_00500 -1.3 -7.1 ATP-dependent DNA helicase RecG compare
IAI47_14945 -1.3 -2.8 pyrroline-5-carboxylate reductase compare
IAI47_08135 -1.3 -5.6 flagellar export chaperone FliS compare
IAI47_08020 -1.3 -5.3 flagellar assembly protein FliH compare
IAI47_17005 -1.3 -4.5 polyribonucleotide nucleotidyltransferase compare
IAI47_18415 -1.3 -2.2 lipoprotein compare
IAI47_13050 -1.3 -2.2 YbjN domain-containing protein compare
IAI47_06040 -1.3 -2.2 DNA polymerase V compare
IAI47_12115 -1.3 -5.9 flagellar hook-associated protein FlgL compare
IAI47_16870 -1.3 -3.8 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_09265 -1.3 -3.2 LapA family protein compare
IAI47_04425 -1.2 -6.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_08285 -1.2 -5.8 flagellar transcriptional regulator FlhC compare
IAI47_13890 -1.2 -4.7 ROK family transcriptional regulator compare
IAI47_12885 -1.2 -4.2 pyruvate formate lyase 1-activating protein compare
IAI47_16600 -1.2 -1.3 tRNA-OTHER compare
IAI47_16990 -1.2 -3.0 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_20705 -1.2 -1.0 sulfur carrier protein ThiS compare
IAI47_18530 -1.2 -1.6 thioredoxin TrxA compare
IAI47_01475 -1.2 -4.6 MurR/RpiR family transcriptional regulator compare
IAI47_12280 -1.2 -6.3 glucan biosynthesis protein G compare
IAI47_09345 -1.2 -3.5 LysR family transcriptional regulator compare
IAI47_14965 -1.2 -1.3 hypothetical protein compare
IAI47_08845 -1.2 -1.1 cell division topological specificity factor MinE compare
IAI47_18675 -1.1 -4.0 MarR family transcriptional regulator compare
IAI47_12275 -1.1 -8.2 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_03640 -1.1 -7.4 glycosyltransferase compare
IAI47_12140 -1.1 -4.4 flagellar basal-body rod protein FlgG compare
IAI47_00675 -1.1 -6.9 glycosyltransferase family 9 protein compare
IAI47_09120 -1.1 -2.2 hypothetical protein compare
IAI47_09750 -1.1 -4.1 ROK family transcriptional regulator compare
IAI47_12120 -1.1 -6.1 flagellar hook-associated protein FlgK compare
IAI47_10755 -1.1 -0.8 DUF1289 domain-containing protein compare
IAI47_08700 -1.1 -3.9 RNA chaperone ProQ compare
IAI47_02585 -1.1 -2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_11115 -1.1 -2.9 hypothetical protein compare
IAI47_03610 -1.1 -2.6 YqgE/AlgH family protein compare
IAI47_08145 -1.1 -6.9 flagellin FliC compare
IAI47_20600 -1.1 -1.2 hypothetical protein compare
IAI47_04895 -1.1 -2.1 pyridoxine 5'-phosphate synthase compare
IAI47_08335 -1.0 -3.9 chemotaxis response regulator CheY compare
IAI47_06320 -1.0 -4.2 phosphate acetyltransferase compare
IAI47_12180 -1.0 -3.0 flagellar export chaperone FlgN compare
IAI47_05830 -1.0 -1.8 hypothetical protein compare
IAI47_21305 -1.0 -2.7 AzlC family ABC transporter permease compare
IAI47_16195 -1.0 -4.6 transaldolase compare
IAI47_12925 -1.0 -1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_03645 -1.0 -6.4 O-antigen ligase family protein compare
IAI47_08610 -1.0 -3.0 tail fiber assembly protein compare
IAI47_13720 -1.0 -2.3 cytochrome d ubiquinol oxidase subunit II compare
IAI47_13310 -1.0 -3.9 MerR family transcriptional regulator compare
IAI47_07085 -1.0 -6.0 histidinol-phosphate transaminase compare
IAI47_12355 -1.0 -1.5 hydroxymyristoyl-ACP dehydratase compare
IAI47_13575 -1.0 -3.3 molybdenum-dependent transcriptional regulator compare
IAI47_01015 -1.0 -2.6 ilv operon leader peptide compare
IAI47_15540 -1.0 -5.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_02775 -1.0 -2.4 glycine dehydrogenase compare
IAI47_02040 -1.0 -3.3 peptidylprolyl isomerase compare
IAI47_07925 -0.9 -2.8 DUF808 family protein compare
IAI47_16350 -0.9 -3.8 phosphoserine phosphatase compare
IAI47_19780 -0.9 -3.7 TetR/AcrR family transcriptional regulator compare
IAI47_04110 -0.9 -7.5 two-component sensor histidine kinase BarA compare
IAI47_08140 -0.9 -5.4 flagellar filament capping protein FliD compare
IAI47_17965 -0.9 -5.4 glucose-6-phosphate isomerase compare
IAI47_09410 -0.9 -2.3 phage shock protein PspD compare
IAI47_13480 -0.9 -1.3 molybdopterin synthase sulfur carrier subunit compare
IAI47_19350 -0.9 -2.0 DUF305 domain-containing protein compare
IAI47_11545 -0.9 -2.0 hypothetical protein compare
IAI47_12865 -0.9 -5.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_16255 -0.9 -3.2 trp operon repressor compare
IAI47_00670 -0.9 -6.8 sugar glycosyltransferase compare
IAI47_08030 -0.9 -4.6 flagellar M-ring protein FliF compare
IAI47_08340 -0.9 -2.9 protein phosphatase CheZ compare
IAI47_11425 -0.9 -1.8 hypothetical protein compare
IAI47_16085 -0.9 -0.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_13725 -0.9 -2.8 cytochrome ubiquinol oxidase subunit I compare
IAI47_00505 -0.9 -2.8 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_13545 -0.9 -4.2 6-phosphogluconolactonase compare
IAI47_07030 -0.9 -2.8 HAD family hydrolase compare
IAI47_06450 -0.9 -2.3 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_16445 -0.9 -3.4 LysR family transcriptional regulator compare
IAI47_02705 -0.8 -4.7 DUF1107 domain-containing protein compare
IAI47_14495 -0.8 -1.8 hypothetical protein compare
IAI47_09440 -0.8 -4.1 transcriptional regulator TyrR compare
IAI47_09720 -0.8 -4.1 TetR/AcrR family transcriptional regulator compare
IAI47_08330 -0.8 -4.0 chemotaxis response regulator protein-glutamate methylesterase compare
IAI47_13140 -0.8 -3.8 molybdopterin molybdotransferase MoeA compare
IAI47_18055 -0.8 -2.7 DNA-binding protein HU-alpha compare
IAI47_06900 -0.8 -1.6 phosphatase PAP2 family protein compare
IAI47_07790 -0.8 -1.2 ribose 1,5-bisphosphokinase compare
IAI47_19380 -0.8 -1.8 hypothetical protein compare
IAI47_02590 -0.8 -2.2 RNA chaperone Hfq compare
IAI47_11625 -0.8 -1.3 DUF1311 domain-containing protein compare
IAI47_06680 -0.8 -2.5 LysR family transcriptional regulator compare
IAI47_07885 -0.8 -0.6 tRNA-Asn compare
IAI47_11160 -0.8 -2.4 uroporphyrinogen-III C-methyltransferase compare
IAI47_08300 -0.8 -4.8 chemotaxis protein CheA compare
IAI47_12135 -0.8 -4.4 flagellar basal body L-ring protein FlgH compare
IAI47_17565 -0.8 -1.8 N-acetylglucosamine kinase compare
IAI47_04280 -0.8 -2.2 alkylphosphonate utilization protein compare
IAI47_02400 -0.8 -1.0 YhdT family protein compare
IAI47_03725 -0.8 -2.6 phosphoglycerate dehydrogenase compare
IAI47_09210 -0.8 -2.8 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_11655 -0.8 -1.4 hypothetical protein compare
IAI47_11515 -0.8 -0.9 hypothetical protein compare
IAI47_21610 -0.8 -4.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_03765 -0.8 -2.6 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_06550 -0.7 -1.8 hypothetical protein compare
IAI47_08290 -0.7 -3.5 flagellar motor stator protein MotA compare
IAI47_18705 -0.7 -3.9 mannitol-1-phosphate 5-dehydrogenase compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms