Experiment set5IT069 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Alanine carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO356_12515 +1.1 5.4 exodeoxyribonuclease III compare
AO356_21320 +1.0 1.9 tRNA-Asn compare
AO356_06715 +1.0 2.4 hypothetical protein compare
AO356_29025 +1.0 2.2 hypothetical protein compare
AO356_02105 +0.9 1.9 hypothetical protein compare
AO356_22565 +0.9 2.0 hypothetical protein compare
AO356_03855 +0.9 7.1 AAA family ATPase compare
AO356_28440 +0.9 1.6 galactose 1-dehydrogenase compare
AO356_18755 +0.9 5.5 succinylglutamate desuccinylase compare
AO356_26915 +0.9 1.9 Fe-S oxidoreductase compare
AO356_13485 +0.8 2.3 chemotaxis protein CheY compare
AO356_01875 +0.8 1.3 Cro/Cl family transcriptional regulator compare
AO356_06685 +0.7 1.2 preprotein translocase subunit YajC compare
AO356_12925 +0.7 1.7 GntR family transcriptional regulator compare
AO356_24325 +0.7 3.1 type VI secretion protein compare
AO356_11400 +0.7 5.4 glutamate:protein symporter compare
AO356_28105 +0.7 2.6 LuxR family transcriptional regulator compare
AO356_29795 +0.7 1.7 amino acid transporter compare
AO356_16320 +0.7 1.8 hypothetical protein compare
AO356_22405 +0.7 1.5 hypothetical protein compare
AO356_29355 +0.7 1.3 hypothetical protein compare
AO356_24410 +0.7 2.4 alanine acetyltransferase compare
AO356_20265 +0.7 2.3 hypothetical protein compare
AO356_24755 +0.7 1.4 type II secretion system protein GspH compare
AO356_19720 +0.7 4.6 branched-chain amino acid ABC transporter substrate-binding protein compare
AO356_12715 +0.7 2.7 hypothetical protein compare
AO356_17950 +0.7 4.7 histidine kinase compare
AO356_28435 +0.7 2.0 SAM-dependent methyltransferase compare
AO356_27760 +0.6 1.7 LysR family transcriptional regulator compare
AO356_25750 +0.6 1.5 GntR family transcriptional regulator compare
AO356_25390 +0.6 1.6 enamine deaminase RidA compare
AO356_28990 +0.6 2.5 SfnB family sulfur acquisition oxidoreductase compare
AO356_08445 +0.6 2.7 TetR family transcriptional regulator compare
AO356_13275 +0.6 1.3 multidrug transporter compare
AO356_14870 +0.6 3.7 dTDP-4-dehydrorhamnose reductase compare
AO356_19935 +0.6 1.8 pilus assembly protein PilA compare
AO356_25260 +0.6 1.0 iron transporter compare
AO356_04795 +0.6 3.0 methanol dehydrogenase compare
AO356_19100 +0.6 2.6 hypothetical protein compare
AO356_13145 +0.6 4.2 glutamine synthetase compare
AO356_14075 +0.6 1.6 amino acid ABC transporter substrate-binding protein compare
AO356_28445 +0.6 1.6 decarboxylase compare
AO356_18720 +0.6 4.3 AraC family transcriptional regulator compare
AO356_15330 +0.6 2.3 D-alanyl-D-alanine carboxypeptidase compare
AO356_19840 +0.6 3.1 histidine kinase compare
AO356_01015 +0.6 1.5 peptidylprolyl isomerase compare
AO356_05830 +0.6 1.4 phage tail protein compare
AO356_09600 +0.6 2.2 histidine ammonia-lyase compare
AO356_11090 +0.6 2.4 aspartate ammonia-lyase compare
AO356_23675 +0.6 1.7 hydroxyacid dehydrogenase compare
AO356_27405 +0.6 1.4 MarR family transcriptional regulator compare
AO356_20785 +0.6 1.3 hypothetical protein compare
AO356_28405 +0.6 1.1 NADH-dependent FMN reductase compare
AO356_18710 +0.6 4.3 L-Arginine ABC transporter, permease component 1 (from data) compare
AO356_00125 +0.6 1.6 hypothetical protein compare
AO356_20480 +0.5 2.3 hypothetical protein compare
AO356_25900 +0.5 1.9 hypothetical protein compare
AO356_26210 +0.5 0.9 histidine kinase compare
AO356_23980 +0.5 1.4 HIT family hydrolase compare
AO356_26575 +0.5 2.6 low temperature requirement protein A compare
AO356_09615 +0.5 1.8 ABC transporter for L-Histidine, permease component (from data) compare
AO356_18705 +0.5 3.5 L-Arginine ABC transporter, permease component 2 (from data) compare
AO356_28510 +0.5 1.7 xylose transporter compare
AO356_26895 +0.5 1.5 2Fe-2S ferredoxin compare
AO356_03925 +0.5 2.9 flagellar basal-body rod protein FlgG compare
AO356_23400 +0.5 1.5 phosphonate ABC transporter compare
AO356_21790 +0.5 1.3 sulfonate ABC transporter ATP-binding protein compare
AO356_01840 +0.5 1.0 uracil permease compare
AO356_25565 +0.5 1.5 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
AO356_15305 +0.5 1.8 50S rRNA methyltransferase compare
AO356_24655 +0.5 1.9 hypothetical protein compare
AO356_25305 +0.5 2.9 metal ABC transporter ATPase compare
AO356_21510 +0.5 1.6 addiction module toxin RelE compare
AO356_18850 +0.5 2.3 hypothetical protein compare
AO356_26455 +0.5 1.1 hypothetical protein compare
AO356_22450 +0.5 2.4 hypothetical protein compare
AO356_15545 +0.5 1.9 GNAT family acetyltransferase compare
AO356_21220 +0.5 1.4 peptide ABC transporter substrate-binding protein compare
AO356_24550 +0.5 0.8 hypothetical protein compare
AO356_23435 +0.5 1.4 hypothetical protein compare
AO356_19810 +0.5 1.5 esterase compare
AO356_05640 +0.5 1.6 LuxR family transcriptional regulator compare
AO356_24990 +0.5 1.4 4-oxalocrotonate tautomerase compare
AO356_03075 +0.5 2.2 MarR family transcriptional regulator compare
AO356_14020 +0.5 1.1 hypothetical protein compare
AO356_27815 +0.5 2.6 hypothetical protein compare
AO356_15395 +0.5 2.4 magnesium transporter compare
AO356_22995 +0.5 1.6 ArsR family transcriptional regulator compare
AO356_11010 +0.5 3.8 hypothetical protein compare
AO356_03930 +0.5 2.1 flagellar biosynthesis protein FlgF compare
AO356_25120 +0.5 1.0 hypothetical protein compare
AO356_02005 +0.5 1.5 hypothetical protein compare
AO356_05280 +0.5 1.8 carbamate kinase compare
AO356_28680 +0.5 1.8 short-chain dehydrogenase compare
AO356_18535 +0.5 1.6 class I peptide chain release factor compare
AO356_13475 +0.5 2.7 glutathione synthetase compare
AO356_21515 +0.5 1.0 antitoxin compare
AO356_12905 +0.5 1.5 amino acid ABC transporter ATP-binding protein compare
AO356_09065 +0.5 1.9 hypothetical protein compare
AO356_06855 +0.5 2.6 peptide ABC transporter ATP-binding protein compare
AO356_29855 +0.5 0.7 hypothetical protein compare
AO356_23040 +0.5 1.4 aldose epimerase compare
AO356_28070 +0.5 2.2 histidine kinase compare
AO356_29540 +0.5 1.5 transcriptional regulator compare
AO356_09015 +0.5 3.7 transcriptional regulator compare
AO356_14965 +0.4 3.8 ABC transporter substrate-binding protein compare
AO356_08385 +0.4 1.1 urease subunit beta compare
AO356_28085 +0.4 2.7 hypothetical protein compare
AO356_12745 +0.4 1.5 iron donor protein CyaY compare
AO356_20460 +0.4 1.6 hypothetical protein compare
AO356_23500 +0.4 3.0 TetR family transcriptional regulator compare
AO356_10565 +0.4 3.8 channel protein TolC compare
AO356_22665 +0.4 1.2 chemotaxis protein compare
AO356_06850 +0.4 1.9 peptide ABC transporter ATP-binding protein compare
AO356_01205 +0.4 2.0 hypothetical protein compare
AO356_03675 +0.4 1.5 hypothetical protein compare
AO356_01545 +0.4 0.8 hypothetical protein compare
AO356_14105 +0.4 0.5 glycine cleavage system protein R compare
AO356_27495 +0.4 1.4 short-chain dehydrogenase compare
AO356_04910 +0.4 2.2 3-carboxy-cis,cis-muconate cycloisomerase compare
AO356_24880 +0.4 0.7 ABC transporter substrate-binding protein compare
AO356_05275 +0.4 1.9 ornithine carbamoyltransferase compare
AO356_22520 +0.4 1.1 glyoxalase compare
AO356_25795 +0.4 1.1 transglutaminase compare
AO356_10555 +0.4 3.6 hemolysin secretion protein D compare
AO356_29470 +0.4 2.1 TetR family transcriptional regulator compare
AO356_05515 +0.4 1.9 ABC transporter for L-Lysine, ATPase component (from data) compare
AO356_10570 +0.4 3.9 large adhesive protein compare
AO356_13880 +0.4 1.6 DNA-binding protein compare
AO356_19975 +0.4 2.1 chemotaxis protein CheY compare
AO356_17765 +0.4 0.9 antibiotic biosynthesis monooxygenase compare
AO356_03765 +0.4 2.4 flagellar biosynthetic protein FliQ compare
AO356_03830 +0.4 2.2 flagellar motor switch protein FliG compare
AO356_24955 +0.4 1.8 D-amino acid oxidase compare
AO356_29085 +0.4 1.6 LysR family transcriptional regulator compare
AO356_19730 +0.4 0.9 hypothetical protein compare
AO356_17000 +0.4 1.8 diguanylate cyclase compare
AO356_11355 +0.4 3.4 hypothetical protein compare
AO356_18150 +0.4 1.2 hypothetical protein compare
AO356_29300 +0.4 2.0 ABC transporter substrate-binding protein compare
AO356_13205 +0.4 1.5 hypothetical protein compare
AO356_06580 +0.4 1.4 GTP-binding protein compare
AO356_27920 +0.4 2.0 p-hydroxycinnamoyl CoA hydratase/lyase compare
AO356_10580 +0.4 2.9 hypothetical protein compare
AO356_26805 +0.4 1.4 hypothetical protein compare
AO356_23945 +0.4 1.1 hypothetical protein compare
AO356_28905 +0.4 1.5 HxlR family transcriptional regulator compare
AO356_11100 +0.4 3.1 L-asparaginase (EC 3.5.1.1) (from data) compare
AO356_03270 +0.4 1.3 terminase compare
AO356_29770 +0.4 1.2 sarcosine oxidase subunit alpha compare
AO356_28370 +0.4 1.1 ABC transporter ATP-binding protein compare
AO356_02735 +0.4 1.1 type III secretion regulator InvE compare
AO356_06940 +0.4 1.5 16S rRNA methyltransferase compare
AO356_21600 +0.4 1.3 hypothetical protein compare
AO356_08710 +0.4 3.2 flagellar motor stator protein MotA compare
AO356_26450 +0.4 1.1 hypothetical protein compare
AO356_21545 +0.4 1.5 hypothetical protein compare
AO356_03840 +0.4 1.9 flagellar hook-basal body protein FliE compare
AO356_03730 +0.4 2.8 flagellar biosynthesis sigma factor compare
AO356_12635 +0.4 2.7 XRE family transcriptional regulator compare
AO356_19015 +0.4 1.9 NAD(P)H-quinone oxidoreductase compare
AO356_27825 +0.4 2.2 Fis family transcriptional regulator compare
AO356_15200 +0.4 2.7 hypothetical protein compare
AO356_18715 +0.4 1.2 L-Arginine ABC transporter, ATPase component (from data) compare
AO356_05440 +0.4 1.1 hypothetical protein compare
AO356_14445 +0.4 1.4 lipoate--protein ligase compare
AO356_26735 +0.4 1.7 tartrate dehydrogenase compare
AO356_24020 +0.4 1.8 phosphate ABC transporter ATP-binding protein compare
AO356_07385 +0.4 0.6 tRNA-Thr compare
AO356_04025 +0.4 0.9 hypothetical protein compare
AO356_26150 +0.4 1.5 2-dehydro-3-deoxyglucarate aldolase compare
AO356_13735 +0.4 1.6 hypothetical protein compare
AO356_24895 +0.4 1.9 butanediol dehydrogenase compare
AO356_28605 +0.4 1.6 N-ethylmaleimide reductase compare
AO356_28065 +0.4 2.1 LuxR family transcriptional regulator compare
AO356_01590 +0.4 1.5 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
AO356_17105 +0.4 2.2 hypothetical protein compare
AO356_19875 +0.4 1.9 hypothetical protein compare
AO356_17100 +0.4 1.4 hypothetical protein compare
AO356_10575 +0.4 1.1 tryptophan synthase subunit beta compare
AO356_02520 +0.4 2.9 diguanylate cyclase compare
AO356_24520 +0.4 1.5 ArsR family transcriptional regulator compare
AO356_10560 +0.4 3.1 ABC transporter compare
AO356_05800 +0.4 1.5 hypothetical protein compare
AO356_07230 +0.4 1.3 hypothetical protein compare
AO356_03005 +0.4 1.6 transcriptional regulator compare
AO356_25300 +0.4 1.1 hypothetical protein compare
AO356_18255 +0.4 2.8 glycerol uptake facilitator GlpF compare
AO356_29160 +0.4 0.8 (2Fe-2S)-binding protein compare
AO356_07350 +0.4 2.0 chemotaxis protein compare
AO356_03755 +0.4 2.8 flagellar biosynthetic protein FlhB compare
AO356_10720 +0.4 2.9 succinate-semialdehyde dehydrogenase compare
AO356_03025 +0.4 2.2 hypothetical protein compare
AO356_18500 +0.4 2.1 hypothetical protein compare
AO356_19920 +0.4 2.1 hypothetical protein compare
AO356_28505 +0.4 1.1 sugar ABC transporter substrate-binding protein compare
AO356_10180 +0.4 1.5 hypothetical protein compare
AO356_00110 +0.4 1.8 hypothetical protein compare
AO356_28580 +0.4 1.2 sugar ABC transporter permease compare
AO356_18370 +0.4 1.1 NADH:quinone oxidoreductase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Alanine in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Alanine across organisms