Experiment set5IT068 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium periodate 0.00125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5986 -6.0 -4.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3045 -5.3 -3.7 Transcriptional regulator, LysR family, in formaldehyde detoxification operon compare
Pf6N2E2_3043 -5.1 -6.0 S-formylglutathione hydrolase (EC 3.1.2.12) compare
Pf6N2E2_3044 -4.9 -4.7 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Pf6N2E2_2181 -4.1 -2.8 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3666 -4.1 -3.9 InaA protein compare
Pf6N2E2_2605 -4.0 -5.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4071 -4.0 -5.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5014 -4.0 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3461 -3.9 -2.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4173 -3.7 -7.1 Methionine ABC transporter permease protein compare
Pf6N2E2_4181 -3.7 -1.6 Organic hydroperoxide resistance protein compare
Pf6N2E2_4612 -3.5 -5.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3341 -3.5 -9.8 Putative deoxyribonuclease YjjV compare
Pf6N2E2_2825 -3.2 -2.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_282 -3.2 -2.0 GNAT family acetyltransferase YjcF compare
Pf6N2E2_5536 -3.2 -2.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4743 -3.1 -1.4 hypothetical protein compare
Pf6N2E2_3908 -3.1 -4.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3460 -3.1 -2.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4803 -3.1 -2.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5527 -3.0 -2.9 Cold shock protein CspC compare
Pf6N2E2_5219 -3.0 -8.6 FIG140336: TPR domain protein compare
Pf6N2E2_3260 -3.0 -2.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5430 -3.0 -8.6 Transglycosylase, Slt family compare
Pf6N2E2_3665 -2.9 -1.3 serine/threonine protein kinase compare
Pf6N2E2_288 -2.9 -2.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3475 -2.8 -2.4 hypothetical protein compare
Pf6N2E2_3258 -2.8 -1.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2261 -2.8 -3.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_4172 -2.8 -4.9 Methionine ABC transporter ATP-binding protein compare
Pf6N2E2_3096 -2.8 -1.7 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3062 -2.7 -4.2 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2473 -2.7 -1.7 Major outer membrane lipoprotein I compare
Pf6N2E2_3271 -2.7 -2.8 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2176 -2.6 -2.5 Amidases related to nicotinamidase compare
Pf6N2E2_5155 -2.6 -3.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4352 -2.6 -3.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3807 -2.6 -4.3 Histidine utilization repressor compare
Pf6N2E2_4075 -2.6 -5.1 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3834 -2.6 -6.4 Lipoprotein NlpD compare
Pf6N2E2_5727 -2.6 -6.7 FIG00955360: hypothetical protein compare
Pf6N2E2_3257 -2.6 -2.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_178 -2.5 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5987 -2.4 -5.4 OmpA family protein compare
Pf6N2E2_2824 -2.4 -9.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4057 -2.4 -1.0 lipoprotein, putative compare
Pf6N2E2_5677 -2.3 -1.4 Carbon storage regulator compare
Pf6N2E2_6095 -2.3 -3.5 tRNA-Asn-GTT compare
Pf6N2E2_4072 -2.3 -4.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2574 -2.2 -2.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_5523 -2.2 -4.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_4579 -2.2 -2.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3942 -2.2 -7.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2472 -2.2 -4.1 hypothetical protein compare
Pf6N2E2_52 -2.2 -9.7 Excinuclease ABC subunit B compare
Pf6N2E2_5150 -2.1 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3351 -2.1 -4.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4888 -2.1 -12.2 Excinuclease ABC subunit A compare
Pf6N2E2_4691 -2.1 -2.2 hypothetical protein compare
Pf6N2E2_3607 -2.1 -7.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_299 -2.1 -6.6 FIG065221: Holliday junction DNA helicase compare
Pf6N2E2_3505 -2.1 -1.8 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4415 -2.1 -2.4 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_3516 -2.0 -2.2 Probable transmembrane protein compare
Pf6N2E2_2375 -2.0 -2.4 Response regulator NasT compare
Pf6N2E2_2606 -2.0 -5.7 hypothetical protein compare
Pf6N2E2_5328 -2.0 -3.3 FIG00958649: hypothetical protein compare
Pf6N2E2_1248 -2.0 -2.4 MutT/nudix family protein compare
Pf6N2E2_2835 -2.0 -1.9 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_5188 -2.0 -4.2 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4273 -1.9 -7.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3095 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_3941 -1.9 -2.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5780 -1.9 -7.7 Periplasmic protease compare
Pf6N2E2_2753 -1.9 -2.2 HtrA protease/chaperone protein compare
Pf6N2E2_2180 -1.9 -2.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4987 -1.9 -1.1 MaoC-like domain protein compare
Pf6N2E2_2010 -1.9 -1.7 hypothetical protein compare
Pf6N2E2_3060 -1.9 -2.0 Outer membrane protein H precursor compare
Pf6N2E2_3617 -1.8 -4.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2088 -1.8 -2.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_5178 -1.8 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5181 -1.8 -7.4 Paraquat-inducible protein A compare
Pf6N2E2_3074 -1.8 -1.7 FIG00960973: hypothetical protein compare
Pf6N2E2_3876 -1.7 -3.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2218 -1.7 -3.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5006 -1.7 -5.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2973 -1.7 -4.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4025 -1.7 -1.2 hypothetical protein compare
Pf6N2E2_3612 -1.7 -2.3 HflK protein compare
Pf6N2E2_5508 -1.7 -2.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_1403 -1.7 -2.4 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_2034 -1.7 -2.8 Methyltransferase compare
Pf6N2E2_1932 -1.6 -4.2 Transcriptional regulator, IclR family compare
Pf6N2E2_2823 -1.6 -3.4 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2756 -1.6 -5.5 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2219 -1.6 -2.1 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4638 -1.6 -2.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_623 -1.6 -1.3 FIG00954674: hypothetical protein compare
Pf6N2E2_5001 -1.6 -1.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_122 -1.6 -1.6 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_1545 -1.6 -3.2 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5340 -1.5 -2.8 Stringent starvation protein A compare
Pf6N2E2_4678 -1.5 -1.1 hypothetical protein compare
Pf6N2E2_5183 -1.5 -6.8 Paraquat-inducible protein B compare
Pf6N2E2_1920 -1.5 -2.4 Rubredoxin compare
Pf6N2E2_2474 -1.5 -5.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3041 -1.4 -4.1 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf6N2E2_1667 -1.4 -2.4 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3835 -1.4 -2.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2469 -1.4 -3.3 hypothetical protein compare
Pf6N2E2_2984 -1.4 -1.6 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5160 -1.4 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4074 -1.4 -7.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3205 -1.4 -2.5 Mobile element protein compare
Pf6N2E2_6059 -1.4 -2.9 FIG008443: hypothetical protein compare
Pf6N2E2_1435 -1.4 -2.2 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_3447 -1.4 -3.9 FIG00959330: hypothetical protein compare
Pf6N2E2_4453 -1.3 -7.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_3723 -1.3 -1.4 FIG022199: FAD-binding protein compare
Pf6N2E2_4372 -1.3 -3.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3568 -1.3 -2.0 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_4362 -1.3 -2.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5761 -1.3 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_4369 -1.3 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4276 -1.3 -3.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_640 -1.3 -3.0 Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system compare
Pf6N2E2_4570 -1.3 -2.2 Cation/multidrug efflux pump compare
Pf6N2E2_5623 -1.3 -2.1 YciL protein compare
Pf6N2E2_624 -1.3 -3.9 hypothetical protein PA3071 compare
Pf6N2E2_5723 -1.3 -5.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_6058 -1.3 -3.7 FIG139976: hypothetical protein compare
Pf6N2E2_2399 -1.3 -4.0 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_4162 -1.3 -1.9 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_59 -1.3 -3.6 16 kDa heat shock protein A compare
Pf6N2E2_4982 -1.3 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_1055 -1.2 -5.1 Transcriptional regulator MexT compare
Pf6N2E2_3833 -1.2 -2.8 hypothetical protein compare
Pf6N2E2_5534 -1.2 -2.8 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4416 -1.2 -1.8 Tyrosine recombinase XerC compare
Pf6N2E2_1173 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_2279 -1.2 -3.3 FIG00954981: hypothetical protein compare
Pf6N2E2_2499 -1.2 -1.5 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_4585 -1.2 -5.8 Cell division protein FtsX compare
Pf6N2E2_2471 -1.2 -5.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3283 -1.2 -3.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5620 -1.2 -2.4 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf6N2E2_5555 -1.2 -0.8 Cold shock protein CspA compare
Pf6N2E2_2752 -1.2 -4.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3264 -1.2 -1.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3725 -1.2 -1.7 FIG085779: Lipoprotein compare
Pf6N2E2_4171 -1.2 -2.5 hypothetical protein compare
Pf6N2E2_5406 -1.2 -1.8 FIG00958224: hypothetical protein compare
Pf6N2E2_2114 -1.2 -1.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_4797 -1.1 -1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3305 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_4307 -1.1 -2.4 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_84 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_3386 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_2152 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_2402 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_3726 -1.1 -3.0 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf6N2E2_669 -1.1 -1.7 Nuclease inhibitor compare
Pf6N2E2_5622 -1.1 -1.4 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_156 -1.1 -1.5 Carbon storage regulator compare
Pf6N2E2_5861 -1.1 -4.8 FIG00953885: hypothetical protein compare
Pf6N2E2_4527 -1.1 -1.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_309 -1.1 -0.9 FIG00957702: hypothetical protein compare
Pf6N2E2_1625 -1.1 -2.0 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3504 -1.1 -4.5 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_55 -1.1 -1.9 Probable hydrolase compare
Pf6N2E2_2501 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_1448 -1.1 -2.8 hypothetical protein compare
Pf6N2E2_5080 -1.1 -4.9 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_5554 -1.1 -2.4 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_3920 -1.1 -6.2 Cystine ABC transporter, permease protein compare
Pf6N2E2_2675 -1.1 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4113 -1.1 -1.7 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_5226 -1.1 -1.1 FIG00955589: hypothetical protein compare
Pf6N2E2_1299 -1.1 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_1815 -1.1 -3.0 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_4365 -1.1 -3.7 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_5103 -1.1 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5342 -1.1 -1.7 21 kDa hemolysin precursor compare
Pf6N2E2_1163 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_4918 -1.0 -2.2 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_621 -1.0 -3.7 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2992 -1.0 -2.8 Regulatory protein RecX compare
Pf6N2E2_5158 -1.0 -2.5 FIG00954153: hypothetical protein compare
Pf6N2E2_3521 -1.0 -4.6 Sensor histidine kinase/response regulator compare
Pf6N2E2_4448 -1.0 -1.6 probable P23 protein compare
Pf6N2E2_74 -1.0 -1.1 DedD protein compare
Pf6N2E2_2905 -1.0 -2.5 CoA transferase, CAIB/BAIF family compare
Pf6N2E2_5741 -1.0 -3.1 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_2309 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_6113 -1.0 -3.1 tRNA-Gly-CCC compare
Pf6N2E2_1292 -1.0 -2.9 Methyl-accepting chemotaxis protein compare
Pf6N2E2_443 -1.0 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5086 -1.0 -0.9 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For stress Sodium periodate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium periodate across organisms