Experiment set5IT068 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
AO356_09540 -3.3 -3.0 twin-arginine protein translocation system subunit TatC compare
AO356_17065 -3.1 -2.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_21125 -3.0 -2.9 cyclic peptide transporter compare
AO356_05670 -2.8 -3.3 recombinase RecA compare
AO356_19420 -2.5 -2.9 septum formation inhibitor compare
AO356_01745 -2.2 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_24845 -2.2 -4.0 ATPase compare
AO356_20475 -2.1 -2.4 hypothetical protein compare
AO356_02460 -2.1 -2.9 hypothetical protein compare
AO356_21465 -2.1 -4.4 amidophosphoribosyltransferase compare
AO356_11315 -2.0 -2.3 shikimate dehydrogenase compare
AO356_17070 -1.9 -2.8 cytochrome B compare
AO356_12380 -1.9 -7.4 ATP-dependent DNA helicase RecG compare
AO356_02265 -1.9 -3.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_07910 -1.9 -1.7 exodeoxyribonuclease V subunit alpha compare
AO356_12520 -1.9 -2.8 orotate phosphoribosyltransferase compare
AO356_02465 -1.9 -2.7 carbonate dehydratase compare
AO356_01750 -1.8 -3.7 ATP-dependent Clp protease proteolytic subunit compare
AO356_27180 -1.8 -4.2 hypothetical protein compare
AO356_07480 -1.8 -3.3 carbamoyl phosphate synthase large subunit compare
AO356_17985 -1.8 -5.9 cold-shock protein compare
AO356_07915 -1.8 -3.2 exodeoxyribonuclease V subunit beta compare
AO356_15325 -1.7 -2.4 hypothetical protein compare
AO356_17075 -1.7 -2.5 cytochrome C compare
AO356_08930 -1.7 -2.7 heptose kinase compare
AO356_11025 -1.6 -5.6 transcriptional regulator PhoU compare
AO356_21095 -1.6 -1.9 thioesterase compare
AO356_16600 -1.6 -2.6 malate:quinone oxidoreductase compare
AO356_14295 -1.5 -1.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_09810 -1.5 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
AO356_18115 -1.5 -6.9 transporter compare
AO356_06575 -1.5 -2.3 outer membrane protein assembly factor BamB compare
AO356_27550 -1.5 -3.4 3-oxoacyl-ACP synthase compare
AO356_17520 -1.4 -1.6 phosphoribosylformylglycinamidine synthase compare
AO356_08905 -1.4 -1.0 glycosyl transferase compare
AO356_09800 -1.4 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_07005 -1.4 -1.8 ABC transporter ATP-binding protein compare
AO356_18020 -1.4 -3.0 ATP-dependent DNA helicase RuvA compare
AO356_13445 -1.4 -1.8 dihydroorotase compare
AO356_18805 -1.3 -1.5 magnesium transporter compare
AO356_03360 -1.3 -2.5 hypothetical protein compare
AO356_22095 -1.3 -4.6 cupin compare
AO356_16075 -1.3 -3.2 Fis family transcriptional regulator compare
AO356_20175 -1.3 -1.2 3-oxoacyl-ACP synthase compare
AO356_18025 -1.3 -2.2 ATP-dependent DNA helicase RuvB compare
AO356_03405 -1.3 -2.9 serine acetyltransferase compare
AO356_13685 -1.3 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_01270 -1.3 -5.3 (Fe-S)-binding protein compare
AO356_10445 -1.2 -1.4 serine protease compare
AO356_28695 -1.2 -2.2 IclR family transcriptional regulator compare
AO356_03500 -1.2 -3.5 3-oxoacyl-ACP reductase compare
AO356_22650 -1.2 -2.1 chemotaxis protein CheD compare
AO356_08610 -1.2 -6.0 exoribonuclease R compare
AO356_02305 -1.2 -2.5 hypothetical protein compare
AO356_06385 -1.2 -2.4 recombinase XerD compare
AO356_12515 -1.2 -3.5 exodeoxyribonuclease III compare
AO356_01740 -1.2 -2.6 DNA-binding protein compare
AO356_14505 -1.2 -1.7 peptidase M23 compare
AO356_26350 -1.1 -2.0 acetyl-CoA acetyltransferase compare
AO356_01570 -1.1 -4.5 hydroxymethylglutaryl-CoA lyase compare
AO356_24485 -1.1 -2.4 SAM-dependent methyltransferase compare
AO356_16060 -1.1 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_01275 -1.1 -4.3 GntR family transcriptional regulator compare
AO356_18370 -1.1 -2.4 NADH:quinone oxidoreductase compare
AO356_02800 -1.1 -2.1 transporter compare
AO356_17950 -1.1 -5.6 histidine kinase compare
AO356_05415 -1.1 -2.9 hypothetical protein compare
AO356_15165 -1.1 -1.8 protein cII compare
AO356_21320 -1.1 -1.2 tRNA-Asn compare
AO356_21795 -1.1 -1.5 PBS lyase compare
AO356_09795 -1.1 -1.2 imidazole glycerol phosphate synthase subunit HisF compare
AO356_12640 -1.1 -1.7 cytochrome C compare
AO356_08585 -1.0 -2.4 50S ribosomal protein L9 compare
AO356_20830 -1.0 -2.5 phosphoadenosine phosphosulfate reductase compare
AO356_11610 -1.0 -1.5 glycerol acyltransferase compare
AO356_29355 -1.0 -1.4 hypothetical protein compare
AO356_15420 -1.0 -3.6 hypothetical protein compare
AO356_20685 -1.0 -3.6 XRE family transcriptional regulator compare
AO356_07110 -1.0 -3.5 ribonuclease G compare
AO356_07390 -1.0 -1.3 polyribonucleotide nucleotidyltransferase compare
AO356_00575 -1.0 -1.8 SCP-2 family sterol carrier protein compare
AO356_25750 -1.0 -1.7 GntR family transcriptional regulator compare
AO356_17610 -1.0 -3.6 preQ0 transporter compare
AO356_23500 -1.0 -4.8 TetR family transcriptional regulator compare
AO356_12725 -1.0 -3.0 recombinase XerC compare
AO356_08890 -0.9 -3.5 glycosyltransferase compare
AO356_19050 -0.9 -2.1 cysteine synthase compare
AO356_13655 -0.9 -3.2 hypothetical protein compare
AO356_15140 -0.9 -1.7 homoserine dehydrogenase compare
AO356_18730 -0.9 -4.8 arginine N-succinyltransferase compare
AO356_19090 -0.9 -1.7 phosphoribosylaminoimidazole synthetase compare
AO356_08895 -0.9 -0.6 GlcNAc-PI de-N-acetylase compare
AO356_18065 -0.9 -2.3 7-carboxy-7-deazaguanine synthase compare
AO356_21220 -0.9 -2.4 peptide ABC transporter substrate-binding protein compare
AO356_02290 -0.9 -1.9 TetR family transcriptional regulator compare
AO356_16070 -0.9 -3.4 poly(A) polymerase compare
AO356_06980 -0.9 -2.8 BolA family transcriptional regulator compare
AO356_03620 -0.9 -1.8 cytochrome C compare
AO356_08280 -0.9 -2.7 oxidoreductase compare
AO356_27925 -0.9 -2.0 MarR family transcriptional regulator compare
AO356_24655 -0.9 -2.8 hypothetical protein compare
AO356_24550 -0.9 -1.2 hypothetical protein compare
AO356_14920 -0.9 -1.6 hypothetical protein compare
AO356_05245 -0.9 -2.4 heme oxygenase compare
AO356_12660 -0.9 -2.9 diguanylate cyclase compare
AO356_26450 -0.8 -2.1 hypothetical protein compare
AO356_08235 -0.8 -4.6 histidine kinase compare
AO356_24755 -0.8 -1.3 type II secretion system protein GspH compare
AO356_06890 -0.8 -2.2 cysteine methyltransferase compare
AO356_29320 -0.8 -2.9 dihydrofolate reductase compare
AO356_25720 -0.8 -2.0 polyamine ABC transporter permease compare
AO356_07540 -0.8 -1.3 SsrA-binding protein compare
AO356_02735 -0.8 -1.4 type III secretion regulator InvE compare
AO356_07090 -0.8 -2.1 hypothetical protein compare
AO356_17220 -0.8 -2.2 hypothetical protein compare
AO356_01590 -0.8 -3.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
AO356_14105 -0.8 -1.4 glycine cleavage system protein R compare
AO356_21140 -0.8 -3.3 peptidase M19 compare
AO356_12900 -0.8 -2.4 exopolyphosphatase compare
AO356_08925 -0.8 -2.6 lipopolysaccharide kinase compare
AO356_04885 -0.8 -3.3 multidrug transporter compare
AO356_03345 -0.8 -3.8 hypothetical protein compare
AO356_07210 -0.8 -1.9 histidine kinase compare
AO356_12925 -0.8 -1.4 GntR family transcriptional regulator compare
AO356_22935 -0.8 -2.0 hypothetical protein compare
AO356_08640 -0.7 -2.3 membrane protease HflC compare
AO356_18740 -0.7 -1.8 succinylglutamate-semialdehyde dehydrogenase compare
AO356_03365 -0.7 -1.8 UDP-N-acetylglucosamine 2-epimerase compare
AO356_20920 -0.7 -2.4 peptidase compare
AO356_15235 -0.7 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO356_02190 -0.7 -3.2 hypothetical protein compare
AO356_09815 -0.7 -3.1 imidazoleglycerol-phosphate dehydratase compare
AO356_25395 -0.7 -1.6 fimbrial assembly protein FimA compare
AO356_02105 -0.7 -1.3 hypothetical protein compare
AO356_16955 -0.7 -3.1 disulfide bond formation protein B compare
AO356_00995 -0.7 -2.6 carbon storage regulator CsrA compare
AO356_12730 -0.7 -2.2 hypothetical protein compare
AO356_24725 -0.7 -1.5 alkylhydroperoxidase compare
AO356_20470 -0.7 -1.4 hypothetical protein compare
AO356_01240 -0.7 -2.3 glucarate dehydratase compare
AO356_08875 -0.7 -1.6 toluene tolerance protein compare
AO356_14335 -0.7 -2.2 rRNA methyltransferase compare
AO356_18555 -0.7 -1.9 peptidase M4 compare
AO356_10935 -0.7 -1.7 hypothetical protein compare
AO356_22565 -0.7 -1.8 hypothetical protein compare
AO356_07730 -0.7 -1.2 hypothetical protein compare
AO356_11990 -0.7 -5.3 DNA helicase II compare
AO356_03885 -0.7 -4.6 beta-ketoacyl-ACP synthase compare
AO356_21790 -0.7 -1.2 sulfonate ABC transporter ATP-binding protein compare
AO356_14135 -0.7 -5.4 biotin synthase compare
AO356_04965 -0.7 -1.3 ATP-dependent helicase compare
AO356_29155 -0.7 -2.2 2-polyprenyl-6-methoxyphenol hydroxylase compare
AO356_04560 -0.7 -1.7 serine peptidase compare
AO356_11270 -0.7 -3.7 potassium transporter peripheral membrane component compare
AO356_11635 -0.7 -4.6 recombinase RecF compare
AO356_23945 -0.7 -1.5 hypothetical protein compare
AO356_08590 -0.7 -3.4 hypothetical protein compare
AO356_03350 -0.7 -2.4 glycosyl transferase compare
AO356_03180 -0.7 -2.6 CysB family transcriptional regulator compare
AO356_26655 -0.7 -1.2 (2Fe-2S)-binding protein compare
AO356_03270 -0.7 -1.8 terminase compare
AO356_26645 -0.7 -2.2 crotonase compare
AO356_06965 -0.7 -3.6 histidinol dehydrogenase compare
AO356_29690 -0.7 -3.2 polysaccharide deacetylase compare
AO356_28585 -0.7 -2.7 ABC transporter compare
AO356_16050 -0.7 -1.5 glucose-6-phosphate isomerase compare
AO356_17515 -0.7 -4.2 murein transglycosylase compare
AO356_19635 -0.7 -4.2 TetR family transcriptional regulator compare
AO356_00920 -0.7 -1.0 cold-shock protein compare
AO356_18060 -0.7 -3.6 hypothetical protein compare
AO356_12605 -0.7 -4.2 FAD-dependent oxidoreductase compare
AO356_26040 -0.7 -1.1 hypothetical protein compare
AO356_19315 -0.7 -2.1 hypothetical protein compare
AO356_11420 -0.7 -3.9 histidine kinase compare
AO356_15925 -0.7 -2.5 ribosomal large subunit pseudouridine synthase D compare
AO356_20915 -0.6 -1.8 thiamine pyrophosphate-binding protein compare
AO356_10185 -0.6 -3.7 glutamate--cysteine ligase compare
AO356_05440 -0.6 -1.6 hypothetical protein compare
AO356_23400 -0.6 -1.6 phosphonate ABC transporter compare
AO356_14140 -0.6 -4.5 8-amino-7-oxononanoate synthase compare
AO356_17020 -0.6 -2.5 cytochrome D ubiquinol oxidase subunit III compare
AO356_10000 -0.6 -2.5 hypothetical protein compare
AO356_16725 -0.6 -1.6 HopJ type III effector protein compare
AO356_17035 -0.6 -2.7 ATPase compare
AO356_11675 -0.6 -3.7 chromosome partitioning protein compare
AO356_01000 -0.6 -2.6 hypothetical protein compare
AO356_04570 -0.6 -3.5 RNA polymerase subunit sigma compare
AO356_09500 -0.6 -1.6 polyhydroxyalkanoic acid system protein compare
AO356_22995 -0.6 -1.7 ArsR family transcriptional regulator compare
AO356_29575 -0.6 -1.8 diguanylate phosphodiesterase compare
AO356_19730 -0.6 -0.9 hypothetical protein compare
AO356_14790 -0.6 -3.4 MFS transporter compare
AO356_19945 -0.6 -3.1 hypothetical protein compare
AO356_27245 -0.6 -1.6 hypothetical protein compare
AO356_06995 -0.6 -2.0 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_28240 -0.6 -2.2 chemotaxis protein CheX compare
AO356_20875 -0.6 -3.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_17785 -0.6 -0.9 heme utilization protein compare
AO356_29220 -0.6 -1.3 hydroxypyruvate isomerase compare
AO356_26635 -0.6 -1.4 hydrolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in lb experiments